Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008162

Physical Location & Seq

Genomic Coordinates Reverse (-)

27187643 .. 27190424

Gene Structure 2782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG237900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGACCTGGTAGAAAAAGTACTGATATGGAAGGAGGAGATTGCGAGGAGCATTCTCGTGATCAAAGCAGAGAAGCTCGAGAAGATTTGATGTGGGCTATCGGATCTGATTACATTAAAAAATTGCAGAAATTCCAATTAGTCTATTATTTGATTACATCTCACTCGTATCAATACGTACAAGGAGCTTTGATCCTCTTAAAACAGACTATTGTCGAAGAAATGAAGAAACCCAATTCAGGAGGTGAAACGATAAATGCACTTGTGCTGTGCACTCCGGATATAGACAAGGGAAATTGCAGTAATTGCCTTAAGATAATAAGATTTGCATCTCGTCTGTTATTCCACGATGTTAATTGTGGTAGAAAGCAAGGAGCTAGAATTCTTAAACCAAGCTGTAATATAAGGTATGAGGTCAGTCAATTCTATGAGACTACAGCTGATTCAGTAGTAAATGTTTCAGCTCAAGTTACTCCAGCACCGCCAACAATTCAAGAAACTCCAGCTCCAGTTCCACCTAAGCAAGGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

177

Amino Acids

19.85

Weight (kDa)

8.18

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	79 - 138	1.1e-07	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008162)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08320
rosa_chinensis	RchiOBHm_Chr2g0140331 RchiOBHm_Chr5g0060361 RchiOBHm_Chr7g0231661
rosa_laevigata	RLG00000024218
rosa_multiflora	Rmu_sc0007315.1_g000009
rosa_roxburghii	Rroxscaffold_1G00046540 Rroxscaffold_2G00099460 Rroxscaffold_6G00406270
rosa_rugosa	Rorug05G0037700 Rorug05G0393800 Rorug06G0053200
rosa_samantha	Rh2AG427100 Rh2AG498000 Rh2CG192800 Rh2CG413600 Rh2CG484100 Rh4DG052300 Rh5DG237900 Rh6AG033500 Rh6AG043500 Rh7CG442800 Rh7DG292300 Rh7DG336700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	2 cut(s)	112, 187
AcsI	RAATTY	2 cut(s)	131, 381
AfaI	GTAC	2 cut(s)	22, 180
AfiI	CCNNNNNNNGG	2 cut(s)	239, 524
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	7 cut(s)	77, 188, 377, 396, 440, 464, 506
AluI	AGCT	7 cut(s)	77, 188, 377, 396, 440, 464, 506
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	425
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	2 cut(s)	112, 187
Ama87I	CYCGRG	1 cut(s)	78
Aor13HI	TCCGGA	1 cut(s)	277
ApaLI	GTGCAC	1 cut(s)	271
ApoI	RAATTY	2 cut(s)	131, 381
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	275
BauI	CACGAG	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	9
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	311
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	1 cut(s)	338
BoxI	GACNNNNGTC	1 cut(s)	212
BpmI	CTGGAG	3 cut(s)	459, 486, 492
Bpu10I	CCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 524
Bse1I	ACTGG	1 cut(s)	509
Bse8I	GATNNNNATC	1 cut(s)	328
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	9
BseJI	GATNNNNATC	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	239, 524
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	2 cut(s)	51, 62
BseSI	GKGCMC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	239, 524
BsmAI	GTCTC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	61, 104, 192
BspACI	CCGC	1 cut(s)	482
BspEI	TCCGGA	1 cut(s)	277
BspPI	GGATC	2 cut(s)	112, 187
BspTI	CTTAAG	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	509
BssMI	GATC	3 cut(s)	61, 104, 192
BssSI	CACGAG	1 cut(s)	57
Bst2BI	CACGAG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	9
BstAFI	CTTAAG	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	519
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstKTI	GATC	3 cut(s)	64, 107, 195
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	3 cut(s)	61, 104, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	9
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	275
BstSNI	TACGTA	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
CsiI	ACCWGGT	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	21, 179
CviJI	RGCY	8 cut(s)	77, 98, 188, 377, 396, 440, 464, 506
CviKI_1	RGCY	8 cut(s)	77, 98, 188, 377, 396, 440, 464, 506
CviQI	GTAC	2 cut(s)	21, 179
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	3 cut(s)	63, 106, 194
DpnII	GATC	3 cut(s)	61, 104, 192
Eco105I	TACGTA	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	7
FaiI	YATR	6 cut(s)	29, 284, 404, 411, 429, 530
FbaI	TGATCA	1 cut(s)	61
FspBI	CTAG	1 cut(s)	378
GsuI	CTGGAG	3 cut(s)	459, 486, 492
HapII	CCGG	1 cut(s)	278
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	104, 109
Hpy188III	TCNNGA	5 cut(s)	59, 80, 240, 278, 494
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	5 cut(s)	127, 260, 273, 300, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 104, 192
LmnI	GCTCC	4 cut(s)	49, 185, 374, 511
LpnPI	CCDG	6 cut(s)	21, 225, 291, 489, 516, 522
LweI	GCATC	1 cut(s)	338
MabI	ACCWGGT	1 cut(s)	7
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	3 cut(s)	63, 106, 194
MboI	GATC	3 cut(s)	61, 104, 192
MboII	GAAGA	3 cut(s)	95, 230, 238
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	275
MnlI	CCTC	5 cut(s)	29, 40, 206, 236, 406
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	5 cut(s)	117, 200, 312, 354, 387
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	440
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	3 cut(s)	61, 104, 192
PaeR7I	CTCGAG	1 cut(s)	78
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	443
Ppu21I	YACGTR	1 cut(s)	178
PshAI	GACNNNNGTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	22, 180
RsaNI	GTAC	2 cut(s)	21, 179
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	5 cut(s)	117, 200, 312, 354, 387
Sau3AI	GATC	3 cut(s)	61, 104, 192
ScaI	AGTACT	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	275
SexAI	ACCWGGT	1 cut(s)	7
SfaNI	GCATC	1 cut(s)	338
SfcI	CTRYAG	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	3 cut(s)	78, 311, 465
SmoI	CTYRAG	3 cut(s)	78, 311, 465
SnaBI	TACGTA	1 cut(s)	178
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	7
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	79, 216
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	5 cut(s)	117, 200, 312, 354, 387
Tru9I	TTAA	5 cut(s)	117, 200, 312, 354, 387
TspDTI	ATGAA	1 cut(s)	239
Vha464I	CTTAAG	1 cut(s)	311
VneI	GTGCAC	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	522
XapI	RAATTY	2 cut(s)	131, 381
XhoI	CTCGAG	1 cut(s)	78
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.