Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008162

Physical Location & Seq

Genomic Coordinates Forward (+)

32977147 .. 32978148

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG292300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGACCAAGCTCTCCACGATCTCTTCTCTCGTTTCTGATGTCCTCATCATCCTCCTCTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCAAATGAACATCTCCCAGGGTTCTCTTATTTCTAATGGTAGAAAAGGCTCAGCTGACGAAAATCTCAATAATGAAAGGATAAACAATGTGTATAAACACAGAAGAATGACAATGGGACAGAACAGTTCTCAAGGTGTTCAGAATCTCACTCAAATTCCTTCCAAGGGTCTGAAAGAGACTAGTGGAAATGTGCATACTGGAGCACTTCCTTCTTGGTTTGCAGCAGATGAAGAAAGTCAGCTTAGTATTCCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCDC84

Protein Analysis

115

Amino Acids

12.5

Weight (kDa)

8.98

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC84	PF14968	55 - 111	1.5e-06	Coiled coil protein 84

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008162)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08320
rosa_chinensis	RchiOBHm_Chr2g0140331 RchiOBHm_Chr5g0060361 RchiOBHm_Chr7g0231661
rosa_laevigata	RLG00000024218
rosa_multiflora	Rmu_sc0007315.1_g000009
rosa_roxburghii	Rroxscaffold_1G00046540 Rroxscaffold_2G00099460 Rroxscaffold_6G00406270
rosa_rugosa	Rorug05G0037700 Rorug05G0393800 Rorug06G0053200
rosa_samantha	Rh2AG427100 Rh2AG498000 Rh2CG192800 Rh2CG413600 Rh2CG484100 Rh4DG052300 Rh5DG237900 Rh6AG033500 Rh6AG043500 Rh7CG442800 Rh7DG292300 Rh7DG336700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	254
AhlI	ACTAGT	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	3 cut(s)	10, 143, 331
AluI	AGCT	3 cut(s)	10, 143, 331
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	260
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	105, 106, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	105, 106, 252
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	3 cut(s)	105, 106, 252
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	28, 89
BstDEI	CTNAG	2 cut(s)	139, 332
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	48
CviJI	RGCY	5 cut(s)	10, 78, 138, 143, 331
CviKI_1	RGCY	5 cut(s)	10, 78, 138, 143, 331
DdeI	CTNAG	2 cut(s)	139, 332
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	28, 89
EarI	CTCTTC	2 cut(s)	28, 89
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaiI	YATR	3 cut(s)	183, 285, 346
FaqI	GGGAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	37, 231, 261
HpyAV	CCTTC	3 cut(s)	89, 258, 309
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	283, 311
HpyF3I	CTNAG	2 cut(s)	139, 332
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	3 cut(s)	92, 119, 273
Lsp1109I	GCAGC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	270
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	4 cut(s)	15, 76, 204, 332
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	3 cut(s)	53, 62, 65
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	54
PasI	CCCWGGG	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	143
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	4 cut(s)	12, 145, 226, 333
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	215
TasI	AATT	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	110, 177, 333
XapI	RAATTY	1 cut(s)	243
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.