Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007315.1

Orthogroup ID

OG0008162

Physical Location & Seq

Genomic Coordinates Forward (+)

46637 .. 48578

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007315.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atggggtttgcagctgaaggtcgtggaagctgcaagagtggaaaaatggataatgtttacacaccaggaaggaactccatttatgatcctaggacaataaaagatgcagtggatactagcatgatatcccgtcagtggaggaactcctggaagcatccaatactttcaaggccagatcttgaatttgacattccaaatattttcggaaccaaattatatcgccagctctttaatgaatttggagataagtatattcatcagtttggtcagtatgaaagagaagcctttgtaggacgtgtgaataaatttttgaagctttacgatggtaaggaggttgactctttcaaagtgtcattccctttagatggagtttatgctgccgacctagctagctttttgataaagaacaatagtttgaatgacaattttgaaaatgaagcagcttatcggtatgtgcaatacttttgttctttgaagttctaccttgttttctggttcacctccacgggtcttatctttgttgtagacagcaatgacagaggtcgtgttgttgaggcaagggatgaattgcacaggatgttgaatgaggtttgttctcatcttgatgagcactgcatgtcttttggtaattctttcacaagtatatcggcctggcttgattttcctctcattgcttgcctcagatattggcagccactggatgcagatgtacaggttaatttccacgattcttttactataattgagtggatgattttggttattgaattctcgacaaattttattatgccaactcttcaatatgtttctttgaagtactttcctgttaggcaaggtgccttcatctgcggctttggtttgcggtggaagaaatacccaaaaacgtacacgcatttacaaacctcaagcaattgcacttggaagctgcaagagtggaaaaatggatcatatttgctttatgttactcatttgataatgttaatttctttccctatggccctaggaaaaagcactggaacaactcaaggtaacagaaagcaagacagttgcagtaaggcaaaagatggacttggtgttctatacgctacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

363

Amino Acids

42.05

Weight (kDa)

8.29

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008162)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08320
rosa_chinensis	RchiOBHm_Chr2g0140331 RchiOBHm_Chr5g0060361 RchiOBHm_Chr7g0231661
rosa_laevigata	RLG00000024218
rosa_multiflora	Rmu_sc0007315.1_g000009
rosa_roxburghii	Rroxscaffold_1G00046540 Rroxscaffold_2G00099460 Rroxscaffold_6G00406270
rosa_rugosa	Rorug05G0037700 Rorug05G0393800 Rorug06G0053200
rosa_samantha	Rh2AG427100 Rh2AG498000 Rh2CG192800 Rh2CG413600 Rh2CG484100 Rh4DG052300 Rh5DG237900 Rh6AG033500 Rh6AG043500 Rh7CG442800 Rh7DG292300 Rh7DG336700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	836
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	2 cut(s)	849, 862
AclWI	GGATC	2 cut(s)	80, 952
AcsI	RAATTY	5 cut(s)	182, 236, 305, 767, 778
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	3 cut(s)	711, 818, 887
AfiI	CCNNNNNNNGG	2 cut(s)	135, 365
AflIII	ACRYGT	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	296
AjnI	CCWGG	3 cut(s)	64, 146, 650
AloI	GAACNNNNNNTCC	2 cut(s)	1059, 1091
AluBI	AGCT	8 cut(s)	14, 30, 226, 316, 389, 393, 443, 925
AluI	AGCT	8 cut(s)	14, 30, 226, 316, 389, 393, 443, 925
Alw21I	GWGCWC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	80, 952
AlwNI	CAGNNNCTG	1 cut(s)	697
AoxI	GGCC	3 cut(s)	170, 648, 996
ApeKI	GCWGC	6 cut(s)	11, 30, 377, 440, 691, 925
ApoI	RAATTY	5 cut(s)	182, 236, 305, 767, 778
AspA2I	CCTAGG	2 cut(s)	89, 1000
AspS9I	GGNCC	1 cut(s)	997
AsuHPI	GGTGA	1 cut(s)	490
AsuNHI	GCTAGC	1 cut(s)	389
AvrII	CCTAGG	2 cut(s)	89, 1000
BanI	GGYRCC	1 cut(s)	836
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	6 cut(s)	17, 23, 364, 452, 703, 912
BccI	CCATC	3 cut(s)	317, 359, 1058
BciT130I	CCWGG	3 cut(s)	66, 148, 652
BciVI	GTATCC	1 cut(s)	106
BfaI	CTAG	5 cut(s)	90, 117, 386, 390, 1001
BfuI	GTATCC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	7 cut(s)	12, 31, 378, 441, 692, 850, 926
BlnI	CCTAGG	2 cut(s)	89, 1000
BlsI	GCNGC	7 cut(s)	13, 32, 379, 442, 693, 851, 927
BmcAI	AGTACT	1 cut(s)	818
Bme1390I	CCNGG	3 cut(s)	66, 148, 652
BmgBI	CACGTC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	997
BmiI	GGNNCC	2 cut(s)	208, 838
BmrFI	CCNGG	3 cut(s)	66, 148, 652
BmsI	GCATC	3 cut(s)	94, 163, 691
BmtI	GCTAGC	1 cut(s)	393
BoxI	GACNNNNGTC	1 cut(s)	540
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuEI	CTTGAG	2 cut(s)	889, 1008
BsaJI	CCNNGG	3 cut(s)	89, 504, 1000
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 365
Bse1I	ACTGG	2 cut(s)	702, 1018
Bse3DI	GCAATG	2 cut(s)	538, 669
BseBI	CCWGG	3 cut(s)	66, 148, 652
BseDI	CCNNGG	3 cut(s)	89, 504, 1000
BseGI	GGATG	5 cut(s)	154, 568, 582, 706, 756
BseLI	CCNNNNNNNGG	2 cut(s)	135, 365
BseMI	GCAATG	2 cut(s)	538, 669
BseMII	CTCAG	1 cut(s)	694
BseNI	ACTGG	2 cut(s)	702, 1018
BseXI	GCAGC	6 cut(s)	17, 23, 364, 452, 703, 912
BshFI	GGCC	3 cut(s)	172, 650, 998
BshNI	GGYRCC	1 cut(s)	836
BsiHKAI	GWGCWC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	135, 365
BsnI	GGCC	3 cut(s)	172, 650, 998
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp1407I	TGTACA	1 cut(s)	709
Bsp143I	GATC	3 cut(s)	85, 175, 944
BspACI	CCGC	2 cut(s)	849, 862
BspANI	GGCC	3 cut(s)	172, 650, 998
BspCNI	CTCAG	1 cut(s)	693
BspLI	GGNNCC	2 cut(s)	208, 838
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	80, 952
BspT107I	GGYRCC	1 cut(s)	836
BsrDI	GCAATG	2 cut(s)	538, 669
BsrGI	TGTACA	1 cut(s)	709
BsrI	ACTGG	2 cut(s)	702, 1018
BssECI	CCNNGG	3 cut(s)	89, 504, 1000
BssMI	GATC	3 cut(s)	85, 175, 944
BssT1I	CCWWGG	2 cut(s)	89, 1000
Bst2UI	CCWGG	3 cut(s)	66, 148, 652
Bst4CI	ACNGT	1 cut(s)	1046
Bst6I	CTCTTC	1 cut(s)	801
BstAUI	TGTACA	1 cut(s)	709
BstC8I	GCNNGC	3 cut(s)	224, 391, 676
BstDEI	CTNAG	1 cut(s)	680
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	5 cut(s)	154, 568, 582, 706, 756
BstKTI	GATC	3 cut(s)	88, 178, 947
BstMBI	GATC	3 cut(s)	85, 175, 944
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	3 cut(s)	66, 148, 652
BstNSI	RCATGY	1 cut(s)	619
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	3 cut(s)	64, 146, 650
BstV1I	GCAGC	6 cut(s)	17, 23, 364, 452, 703, 912
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	172, 650, 998
BtgI	CCRYGG	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	296
BtsCI	GGATG	5 cut(s)	154, 568, 582, 706, 756
BtsI	GCAGTG	2 cut(s)	114, 610
BtsIMutI	CAGTG	5 cut(s)	114, 140, 610, 695, 1011
Cac8I	GCNNGC	3 cut(s)	224, 391, 676
CaiI	CAGNNNCTG	1 cut(s)	697
Cfr13I	GGNCC	1 cut(s)	997
Csp6I	GTAC	3 cut(s)	710, 817, 886
CviAII	CATG	2 cut(s)	121, 616
CviQI	GTAC	3 cut(s)	710, 817, 886
DdeI	CTNAG	1 cut(s)	680
DpnI	GATC	3 cut(s)	87, 177, 946
DpnII	GATC	3 cut(s)	85, 175, 944
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Eco130I	CCWWGG	2 cut(s)	89, 1000
Eco32I	GATATC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	3 cut(s)	64, 146, 650
EcoRV	GATATC	1 cut(s)	126
EcoT14I	CCWWGG	2 cut(s)	89, 1000
ErhI	CCWWGG	2 cut(s)	89, 1000
FaeI	CATG	2 cut(s)	124, 619
FalI	AAGNNNNNCTT	2 cut(s)	1053, 1085
FatI	CATG	2 cut(s)	120, 615
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	7 cut(s)	12, 31, 378, 441, 692, 850, 926
FokI	GGATG	5 cut(s)	141, 575, 589, 713, 763
Fsp4HI	GCNGC	7 cut(s)	12, 31, 378, 441, 692, 850, 926
FspBI	CTAG	5 cut(s)	90, 117, 386, 390, 1001
GluI	GCNGC	7 cut(s)	12, 31, 378, 441, 692, 850, 926
HaeIII	GGCC	3 cut(s)	172, 650, 998
Hin1II	CATG	2 cut(s)	124, 619
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	338, 728
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	5 cut(s)	58, 337, 498, 526, 888
Hpy188I	TCNGA	2 cut(s)	206, 683
Hpy188III	TCNNGA	3 cut(s)	179, 602, 772
Hpy8I	GTNNAC	5 cut(s)	58, 337, 498, 526, 888
HpyAV	CCTTC	3 cut(s)	11, 63, 850
HpyCH4III	ACNGT	1 cut(s)	1046
HpyCH4IV	ACGT	2 cut(s)	295, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	680
HpySE526I	ACGT	2 cut(s)	295, 884
Hsp92II	CATG	2 cut(s)	124, 619
Kzo9I	GATC	3 cut(s)	85, 175, 944
Lsp1109I	GCAGC	6 cut(s)	17, 23, 364, 452, 703, 912
LweI	GCATC	3 cut(s)	94, 163, 691
MaeI	CTAG	5 cut(s)	90, 117, 386, 390, 1001
MaeII	ACGT	2 cut(s)	295, 884
MaeIII	GTNAC	2 cut(s)	961, 1028
MalI	GATC	3 cut(s)	87, 177, 946
MboI	GATC	3 cut(s)	85, 175, 944
MboII	GAAGA	2 cut(s)	788, 880
MfeI	CAATTG	1 cut(s)	910
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	612
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	9 cut(s)	132, 325, 511, 533, 547, 580, 675, 689, 913
MseI	TTAA	3 cut(s)	231, 717, 980
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	3 cut(s)	66, 148, 652
MunI	CAATTG	1 cut(s)	910
MvaI	CCWGG	3 cut(s)	66, 148, 652
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	3 cut(s)	85, 175, 944
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	2 cut(s)	124, 619
NlaIV	GGNNCC	2 cut(s)	208, 838
NspI	RCATGY	1 cut(s)	619
PfeI	GAWTC	1 cut(s)	728
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	7 cut(s)	13, 32, 379, 442, 693, 851, 927
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PshAI	GACNNNNGTC	1 cut(s)	540
Psp6I	CCWGG	3 cut(s)	64, 146, 650
PspGI	CCWGG	3 cut(s)	64, 146, 650
PspN4I	GGNNCC	2 cut(s)	208, 838
PspPI	GGNCC	1 cut(s)	997
PstNI	CAGNNNCTG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	711, 818, 887
RsaNI	GTAC	3 cut(s)	710, 817, 886
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	3 cut(s)	231, 717, 980
SatI	GCNGC	7 cut(s)	12, 31, 378, 441, 692, 850, 926
Sau3AI	GATC	3 cut(s)	85, 175, 944
Sau96I	GGNCC	1 cut(s)	997
ScaI	AGTACT	1 cut(s)	818
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	66, 148, 652
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	3 cut(s)	94, 163, 691
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	2 cut(s)	904, 1023
SmoI	CTYRAG	2 cut(s)	904, 1023
SsiI	CCGC	2 cut(s)	849, 862
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	5 cut(s)	90, 117, 386, 390, 1001
StyD4I	CCNGG	3 cut(s)	64, 146, 650
StyI	CCWWGG	2 cut(s)	89, 1000
TaaI	ACNGT	1 cut(s)	1046
TaiI	ACGT	2 cut(s)	298, 887
TaqI	TCGA	1 cut(s)	773
TatI	WGTACW	2 cut(s)	709, 816
TauI	GCSGC	1 cut(s)	852
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	3 cut(s)	231, 717, 980
Tru9I	TTAA	3 cut(s)	231, 717, 980
TscAI	CASTG	5 cut(s)	114, 140, 617, 702, 1018
TseI	GCWGC	6 cut(s)	11, 30, 377, 440, 691, 925
TspDTI	ATGAA	6 cut(s)	245, 249, 288, 450, 579, 832
TspRI	CASTG	5 cut(s)	114, 140, 617, 702, 1018
XapI	RAATTY	5 cut(s)	182, 236, 305, 767, 778
XceI	RCATGY	1 cut(s)	619
XmaJI	CCTAGG	2 cut(s)	89, 1000
XmiI	GTMKAC	1 cut(s)	525
XspI	CTAG	5 cut(s)	90, 117, 386, 390, 1001
ZrmI	AGTACT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.