Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008162

Physical Location & Seq

Genomic Coordinates Reverse (-)

33197071 .. 33203998

Gene Structure 6928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024218

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACCAAGCTCTCCACGATCTCTTCTCTTGTCTCCGATGTCCTCATTGTCCTCCTCTGGTCTCTCGTCATTCTCAACCTTCTCTTCCGCCAAATGAACATCTCAAAAGGCTCAGCTGACCTAAATTTCAATAATGAAAAGGTAGAGTTGTATTCAAATGCTCTAAACTCGGCCCTCAATGAGGAAATGTCCGCCGATCCGAAAGAGTTTTTGATGGGTGAAGAGGTTGGGAGTATCAATGTGCTTACAAGGTTTGTAATCTTAGAAGTTGACTTGGCAAATTCATTTAGCATTTATGTTATCTCTGGGAATATTCAGAACCTGGGCTTCATTCGTCTTCTTGATTACATTGTTAATGACATTCCAAAACATGCCCAAAAAGCGTTGTTTCCCGGTATATGGTTGACAGAGGACTCAGTTGATTCGTACAAGGTTCCTGAATTCCCTGAAAATGTCAAGGCAAACATGGATTCAACAGTGGCTGTTGTAAATGGTGGAAGTGGAAGTGGAAGTGGAACCGGAACTGGAAGTGAAGAATCAGGCTGGTCTCCGAAGAATGCAAAGGAAGTGCCTATTCCTAAATCAAAGAAGACAAAGTCTGCTCACTCTGCTGCAATGAAGAGGAAGAGGAAAAGTACAGCTGTTGTGACAAGAGAGAGGTCCCAGGTCTGGCAGCATTTCACCAAGGAGGTTCATCCTATCATCGAAACAGTTGATGGAGGATCATCCTATTATCGAAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

249

Amino Acids

27.32

Weight (kDa)

6.53

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008162)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08320
rosa_chinensis	RchiOBHm_Chr2g0140331 RchiOBHm_Chr5g0060361 RchiOBHm_Chr7g0231661
rosa_laevigata	RLG00000024218
rosa_multiflora	Rmu_sc0007315.1_g000009
rosa_roxburghii	Rroxscaffold_1G00046540 Rroxscaffold_2G00099460 Rroxscaffold_6G00406270
rosa_rugosa	Rorug05G0037700 Rorug05G0393800 Rorug06G0053200
rosa_samantha	Rh2AG427100 Rh2AG498000 Rh2CG192800 Rh2CG413600 Rh2CG484100 Rh4DG052300 Rh5DG237900 Rh6AG033500 Rh6AG043500 Rh7CG442800 Rh7DG292300 Rh7DG336700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	88, 192
AclWI	GGATC	2 cut(s)	191, 730
AcsI	RAATTY	3 cut(s)	124, 280, 440
AfaI	GTAC	2 cut(s)	428, 637
AfiI	CCNNNNNNNGG	3 cut(s)	181, 399, 669
AgsI	TTSAA	3 cut(s)	130, 156, 474
AjnI	CCWGG	2 cut(s)	321, 663
AluBI	AGCT	3 cut(s)	10, 116, 641
AluI	AGCT	3 cut(s)	10, 116, 641
Alw26I	GTCTC	3 cut(s)	37, 66, 552
AlwI	GGATC	2 cut(s)	191, 730
AlwNI	CAGNNNCTG	2 cut(s)	322, 482
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	611, 673
ApoI	RAATTY	3 cut(s)	124, 280, 440
AspS9I	GGNCC	2 cut(s)	172, 660
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	230, 673
AvaII	GGWCC	1 cut(s)	660
BbsI	GAAGAC	2 cut(s)	329, 596
BbvI	GCAGC	2 cut(s)	598, 685
BccI	CCATC	2 cut(s)	208, 710
BciT130I	CCWGG	2 cut(s)	323, 665
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	3 cut(s)	37, 66, 552
BisI	GCNGC	2 cut(s)	612, 674
BlpI	GCTNAGC	1 cut(s)	112
BlsI	GCNGC	2 cut(s)	613, 675
Bme1390I	CCNGG	3 cut(s)	323, 393, 665
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	2 cut(s)	172, 660
BmiI	GGNNCC	3 cut(s)	435, 517, 662
BmrFI	CCNGG	3 cut(s)	323, 393, 665
BpiI	GAAGAC	2 cut(s)	329, 596
Bpu1102I	GCTNAGC	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	393
BsaI	GGTCTC	2 cut(s)	66, 552
BsaJI	CCNNGG	3 cut(s)	322, 663, 684
BsaWI	WCCGGW	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 399, 669
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	323, 665
BseDI	CCNNGG	3 cut(s)	322, 663, 684
BseGI	GGATG	2 cut(s)	694, 725
BseLI	CCNNNNNNNGG	3 cut(s)	181, 399, 669
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	126, 429
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	598, 685
BshFI	GGCC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	393, 519
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	3 cut(s)	181, 399, 669
BsmAI	GTCTC	3 cut(s)	37, 66, 552
BsmFI	GGGAC	1 cut(s)	646
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	173
Bso31I	GGTCTC	2 cut(s)	66, 552
Bsp143I	GATC	3 cut(s)	18, 196, 722
Bsp1720I	GCTNAGC	1 cut(s)	112
BspACI	CCGC	2 cut(s)	88, 192
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	125, 428
BspLI	GGNNCC	3 cut(s)	435, 517, 662
BspPI	GGATC	2 cut(s)	191, 730
BspTNI	GGTCTC	2 cut(s)	66, 552
BsrDI	GCAATG	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	3 cut(s)	322, 663, 684
BssMI	GATC	3 cut(s)	18, 196, 722
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	2 cut(s)	323, 665
Bst4CI	ACNGT	2 cut(s)	478, 712
Bst6I	CTCTTC	5 cut(s)	28, 89, 216, 614, 620
BstDEI	CTNAG	3 cut(s)	112, 262, 415
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	694, 725
BstKTI	GATC	3 cut(s)	21, 199, 725
BstMAI	GTCTC	3 cut(s)	37, 66, 552
BstMBI	GATC	3 cut(s)	18, 196, 722
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 608
BstNI	CCWGG	2 cut(s)	323, 665
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	3 cut(s)	321, 391, 663
BstV1I	GCAGC	2 cut(s)	598, 685
BstV2I	GAAGAC	2 cut(s)	329, 596
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	694, 725
BtsIMutI	CAGTG	1 cut(s)	483
CaiI	CAGNNNCTG	2 cut(s)	322, 482
Cfr13I	GGNCC	2 cut(s)	172, 660
Csp6I	GTAC	2 cut(s)	427, 636
CviAII	CATG	2 cut(s)	371, 466
CviJI	RGCY	8 cut(s)	10, 111, 116, 173, 327, 482, 543, 641
CviKI_1	RGCY	8 cut(s)	10, 111, 116, 173, 327, 482, 543, 641
CviQI	GTAC	2 cut(s)	427, 636
DdeI	CTNAG	3 cut(s)	112, 262, 415
DpnI	GATC	3 cut(s)	20, 198, 724
DpnII	GATC	3 cut(s)	18, 196, 722
Eam1104I	CTCTTC	5 cut(s)	28, 89, 216, 614, 620
EarI	CTCTTC	5 cut(s)	28, 89, 216, 614, 620
EciI	GGCGGA	2 cut(s)	77, 181
Eco130I	CCWWGG	1 cut(s)	684
Eco31I	GGTCTC	2 cut(s)	66, 552
Eco47I	GGWCC	1 cut(s)	660
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	321, 663
EcoT14I	CCWWGG	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	2 cut(s)	374, 469
FaiI	YATR	5 cut(s)	297, 372, 398, 400, 467
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	2 cut(s)	370, 465
Fnu4HI	GCNGC	2 cut(s)	612, 674
FokI	GGATG	2 cut(s)	681, 712
Fsp4HI	GCNGC	2 cut(s)	612, 674
GluI	GCNGC	2 cut(s)	612, 674
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	393, 519
Hin1II	CATG	2 cut(s)	374, 469
HincII	GTYRAC	2 cut(s)	271, 405
HindII	GTYRAC	2 cut(s)	271, 405
HinfI	GANTC	4 cut(s)	413, 422, 470, 536
HpaII	CCGG	2 cut(s)	393, 519
HphI	GGTGA	2 cut(s)	230, 673
Hpy166II	GTNNAC	2 cut(s)	271, 405
Hpy188I	TCNGA	4 cut(s)	37, 201, 318, 552
Hpy188III	TCNNGA	2 cut(s)	341, 437
Hpy8I	GTNNAC	2 cut(s)	271, 405
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	2 cut(s)	478, 712
HpyCH4V	TGCA	2 cut(s)	560, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 608
HpyF3I	CTNAG	3 cut(s)	112, 262, 415
Hsp92II	CATG	2 cut(s)	374, 469
Kzo9I	GATC	3 cut(s)	18, 196, 722
Lsp1109I	GCAGC	2 cut(s)	598, 685
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	3 cut(s)	20, 198, 724
MboI	GATC	3 cut(s)	18, 196, 722
MboII	GAAGA	9 cut(s)	15, 76, 233, 329, 545, 565, 601, 631, 637
MluCI	AATT	3 cut(s)	124, 280, 440
MlyI	GAGTC	1 cut(s)	407
MseI	TTAA	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	116, 641
MspI	CCGG	2 cut(s)	393, 519
MspR9I	CCNGG	3 cut(s)	323, 393, 665
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	2 cut(s)	323, 665
MwoI	GCNNNNNNNGC	2 cut(s)	380, 608
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	18, 196, 722
NlaIII	CATG	2 cut(s)	374, 469
NlaIV	GGNNCC	3 cut(s)	435, 517, 662
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	646
NspI	RCATGY	1 cut(s)	374
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	3 cut(s)	422, 470, 536
PflFI	GACNNNGTC	1 cut(s)	595
PkrI	GCNGC	2 cut(s)	613, 675
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PpuMI	RGGWCCY	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	2 cut(s)	321, 663
PspGI	CCWGG	2 cut(s)	321, 663
PspN4I	GGNNCC	3 cut(s)	435, 517, 662
PspPI	GGNCC	2 cut(s)	172, 660
PspPPI	RGGWCCY	1 cut(s)	660
PstNI	CAGNNNCTG	2 cut(s)	322, 482
PsyI	GACNNNGTC	1 cut(s)	595
PvuII	CAGCTG	2 cut(s)	116, 641
RsaI	GTAC	2 cut(s)	428, 637
RsaNI	GTAC	2 cut(s)	427, 636
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	612, 674
Sau3AI	GATC	3 cut(s)	18, 196, 722
Sau96I	GGNCC	2 cut(s)	172, 660
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	3 cut(s)	323, 393, 665
SinI	GGWCC	1 cut(s)	660
Sse9I	AATT	3 cut(s)	124, 280, 440
SsiI	CCGC	2 cut(s)	88, 192
SspI	AATATT	1 cut(s)	313
StyD4I	CCNGG	3 cut(s)	321, 391, 663
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	2 cut(s)	478, 712
TaqI	TCGA	2 cut(s)	705, 736
TasI	AATT	3 cut(s)	124, 280, 440
TatI	WGTACW	1 cut(s)	635
TfiI	GAWTC	3 cut(s)	422, 470, 536
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	2 cut(s)	611, 673
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	6 cut(s)	110, 150, 273, 319, 632, 683
TspRI	CASTG	1 cut(s)	483
Tth111I	GACNNNGTC	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	660
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	3 cut(s)	124, 280, 440
XceI	RCATGY	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.