Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013738

Physical Location & Seq

Genomic Coordinates Reverse (-)

4765529 .. 4767554

Gene Structure 2026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42181

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGATCAAGAATCTCAATTTATCTTATAACAGGTTATCAGGAGAAATTCCAGACACTGGGAGGATAAAATCTTTCAATAGAAGCTCATTCTTGGGGAATGTGGGGTTGTGTGGTGGTTCTGCACTACTTGGTCGTCCGCCATGCGTAGTTCAAAAGAGAGAATATATAATAAGAAAATCGATACTTTACCCTTTGGTTGCAGCAGTTGCAGTAGTCTGTGTGCTGGTTGCTGTCTTTGTTTATTGTTTCTTCTTCTTCTTCAGAAAACGGGATTCAAAACCAGAACACCCTGAACACAGAATGCTAAGAGTAATGGGATCACCGAGCCATCATGGAAGTCAAATTTTCACCCAAAGGGAACTTGAAATTGCAACAGGTGAGTTCAATGAGTCTCACCTCCTGGGTAGAGGAACCAGCGGAGCAGTCTATAAAGCAGTTATTGACAATGGGGAAAATAATCAAAATATCGTGGCAGTGAAGGTACTGCATGGTGATGGTAATCAGAGTTACAGAAGCTTCAAGAGGGAATGTCAAATAATGTCCCAAGTTAAGCACCGGAATCTTGTAAGAATGGTGGGATATACCTGGAACAAACAGTTCAAGGCTCTTATTCTTGAGTATATTGACAATGGTAACTTAGCACAGCATCTTTATCCTGGTGAACTAGAGGAAGGAGCATGTGAATTATCGTTGAGGGATAGAATGTCAATAGCTATAGATGTTGCTAGTGGCTTGGAGTATCTTCAAGAAGGTTGTCCAGTCCAAATTATGCACTGTGATATAAAACCAGAAAATGTGCTTATTGACAACAATATGGTGGCTCATGTAGCAGATTTCGGGATTGGGAAGCTCAACGCAGCTGTGAAATCCAACGAATCACATGTTAGCACAACGCATTTTCTACGTGGATCAATTGGTTACATTCCCCCAGAATATGGACAAGGAATTGAGGTATCAGCAAAAGGAGACATCTATAGCTTCGGTGTCATGGTGCTTGAGATGATAACAAGAAGAAGACCGACAAGCAATATGTTTCCGGATGGGCTTGATCTAAGGAAGTGGGTGGTTTCTTCGTTCCCAGACCATGTTTGGGATGTTGTTGACAGTACATTAAAGGAGATACAAAGCACACATGGCGCTTTGGATGAGCTTGAGAAATGCTGCATTCAAATGCTTGATGTGGGGTTGATGTGCACAGAAGAGAATCCACATGAAAGACCTGCTATGTCTTTTGTTGTGCAGAAATTGAAACAGGTTATGAAAAGCTCCAATATCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

426

Amino Acids

47.77

Weight (kDa)

7.22

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	129 - 412	4.2e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	132 - 416	4.9e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013738)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G325600_v2.0.a1 Prupe.6G325700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454791 RchiOBHm_Chr3g0454811
rosa_laevigata	RLG00000025405
rosa_multiflora	Rmu_co8436185.1_g000001 Rmu_sc0001792.1_g000012 Rmu_sc0001792.1_g000014 Rmu_sc0013126.1_g000007
rosa_roxburghii	Rroxscaffold_6G00424710
rosa_rugosa	Rorug03G0002500 Rorug03G0002700
rosa_samantha	Rh3AG062500 Rh3BG064400 Rh3CG063300 Rh3DG064400
rosa_wichuraiana	Rw3G004870 Rw3G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	1228
AccB7I	CCANNNNNTGG	2 cut(s)	56, 935
AccIII	TCCGGA	1 cut(s)	1036
AciI	CCGC	2 cut(s)	137, 417
AclWI	GGATC	2 cut(s)	325, 916
AcsI	RAATTY	2 cut(s)	45, 342
AcuI	CTGAAG	1 cut(s)	244
AfaI	GTAC	2 cut(s)	483, 1108
AfiI	CCNNNNNNNGG	3 cut(s)	56, 935, 1090
AflIII	ACRYGT	1 cut(s)	880
AjnI	CCWGG	3 cut(s)	399, 584, 655
AluBI	AGCT	8 cut(s)	84, 516, 713, 850, 860, 978, 1150, 1266
AluI	AGCT	8 cut(s)	84, 516, 713, 850, 860, 978, 1150, 1266
Alw21I	GWGCWC	1 cut(s)	1196
Alw26I	GTCTC	2 cut(s)	396, 960
Alw44I	GTGCAC	1 cut(s)	1192
AlwI	GGATC	2 cut(s)	325, 916
AlwNI	CAGNNNCTG	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	1036
ApaLI	GTGCAC	1 cut(s)	1192
ApeKI	GCWGC	3 cut(s)	200, 857, 1161
ApoI	RAATTY	2 cut(s)	45, 342
AspLEI	GCGC	1 cut(s)	1139
AsuHPI	GGTGA	6 cut(s)	312, 340, 386, 389, 503, 671
BaeGI	GKGCMC	1 cut(s)	1196
BbsI	GAAGAC	1 cut(s)	1021
Bbv12I	GWGCWC	1 cut(s)	1196
BbvI	GCAGC	3 cut(s)	212, 869, 1148
BccI	CCATC	3 cut(s)	336, 488, 1034
BciT130I	CCWGG	3 cut(s)	401, 586, 657
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	396, 960
BfaI	CTAG	2 cut(s)	665, 726
BfmI	CTRYAG	2 cut(s)	714, 973
BfoI	RGCGCY	1 cut(s)	1140
BfuAI	ACCTGC	1 cut(s)	1228
BisI	GCNGC	3 cut(s)	201, 858, 1162
BlsI	GCNGC	3 cut(s)	202, 859, 1163
Bme1390I	CCNGG	3 cut(s)	401, 586, 657
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	3 cut(s)	401, 586, 657
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	655
BmuI	ACTGGG	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	1021
BpuEI	CTTGAG	3 cut(s)	635, 1016, 1172
Bsa29I	ATCGAT	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	400
BsaWI	WCCGGW	2 cut(s)	555, 1036
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 935, 1090
Bse1I	ACTGG	2 cut(s)	61, 758
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	1036
BseBI	CCWGG	3 cut(s)	401, 586, 657
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	3 cut(s)	1045, 1099, 1150
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	56, 935, 1090
BseNI	ACTGG	2 cut(s)	61, 758
BseSI	GKGCMC	1 cut(s)	1196
BseXI	GCAGC	3 cut(s)	212, 869, 1148
BsgI	GTGCAG	2 cut(s)	105, 1259
BshVI	ATCGAT	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	1196
BsiSI	CCGG	2 cut(s)	556, 1037
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	3 cut(s)	56, 935, 1090
BsmAI	GTCTC	2 cut(s)	396, 960
BsmFI	GGGAC	1 cut(s)	526
BsmI	GAATGC	2 cut(s)	306, 1164
Bsp1286I	GDGCHC	1 cut(s)	1196
Bsp13I	TCCGGA	1 cut(s)	1036
Bsp143I	GATC	4 cut(s)	3, 317, 908, 1048
BspACI	CCGC	2 cut(s)	137, 417
BspDI	ATCGAT	1 cut(s)	179
BspEI	TCCGGA	1 cut(s)	1036
BspLI	GGNNCC	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	1228
BspPI	GGATC	2 cut(s)	325, 916
BsrI	ACTGG	2 cut(s)	61, 758
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	4 cut(s)	3, 317, 908, 1048
Bst2UI	CCWGG	3 cut(s)	401, 586, 657
Bst4CI	ACNGT	3 cut(s)	597, 776, 1106
Bst6I	CTCTTC	1 cut(s)	1194
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	905
BstDEI	CTNAG	3 cut(s)	305, 637, 1052
BstF5I	GGATG	3 cut(s)	1045, 1099, 1150
BstH2I	RGCGCY	1 cut(s)	1140
BstHHI	GCGC	1 cut(s)	1139
BstKTI	GATC	4 cut(s)	6, 320, 911, 1051
BstMAI	GTCTC	2 cut(s)	396, 960
BstMBI	GATC	4 cut(s)	3, 317, 908, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 827, 1134
BstNI	CCWGG	3 cut(s)	401, 586, 657
BstNSI	RCATGY	2 cut(s)	681, 884
BstSCI	CCNGG	3 cut(s)	399, 584, 655
BstSFI	CTRYAG	2 cut(s)	714, 973
BstSLI	GKGCMC	1 cut(s)	1196
BstV1I	GCAGC	3 cut(s)	212, 869, 1148
BstV2I	GAAGAC	1 cut(s)	1021
Bsu15I	ATCGAT	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	179
BtsCI	GGATG	3 cut(s)	1045, 1099, 1150
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	54, 480, 772
BveI	ACCTGC	1 cut(s)	1228
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	1139
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	482, 1107
CviQI	GTAC	2 cut(s)	482, 1107
DdeI	CTNAG	3 cut(s)	305, 637, 1052
DpnI	GATC	4 cut(s)	5, 319, 910, 1050
DpnII	GATC	4 cut(s)	3, 317, 908, 1048
Eam1104I	CTCTTC	1 cut(s)	1194
EarI	CTCTTC	1 cut(s)	1194
EciI	GGCGGA	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	244
EcoRII	CCWGG	3 cut(s)	399, 584, 655
FaqI	GGGAC	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	201, 858, 1162
FokI	GGATG	3 cut(s)	1052, 1106, 1157
Fsp4HI	GCNGC	3 cut(s)	201, 858, 1162
FspBI	CTAG	2 cut(s)	665, 726
GlaI	GCGC	1 cut(s)	1138
GluI	GCNGC	3 cut(s)	201, 858, 1162
HaeII	RGCGCY	1 cut(s)	1140
HapII	CCGG	2 cut(s)	556, 1037
HhaI	GCGC	1 cut(s)	1139
Hin6I	GCGC	1 cut(s)	1137
HinP1I	GCGC	1 cut(s)	1137
HincII	GTYRAC	1 cut(s)	1102
HindII	GTYRAC	1 cut(s)	1102
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	6 cut(s)	10, 272, 389, 559, 875, 1204
HpaII	CCGG	2 cut(s)	556, 1037
HphI	GGTGA	6 cut(s)	312, 340, 386, 389, 503, 671
Hpy166II	GTNNAC	3 cut(s)	662, 1102, 1194
Hpy188I	TCNGA	3 cut(s)	263, 504, 1280
Hpy188III	TCNNGA	8 cut(s)	7, 39, 50, 520, 614, 746, 838, 1037
Hpy8I	GTNNAC	3 cut(s)	662, 1102, 1194
HpyAV	CCTTC	3 cut(s)	472, 665, 743
HpyCH4III	ACNGT	3 cut(s)	597, 776, 1106
HpyCH4IV	ACGT	1 cut(s)	904
HpyCH4V	TGCA	9 cut(s)	122, 200, 209, 371, 487, 772, 1164, 1194, 1240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 827, 1134
HpyF3I	CTNAG	3 cut(s)	305, 637, 1052
HpySE526I	ACGT	1 cut(s)	904
HspAI	GCGC	1 cut(s)	1137
Kpn2I	TCCGGA	1 cut(s)	1036
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 317, 908, 1048
LmnI	GCTCC	3 cut(s)	419, 674, 1271
Lsp1109I	GCAGC	3 cut(s)	212, 869, 1148
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	665, 726
MaeII	ACGT	1 cut(s)	904
MaeIII	GTNAC	3 cut(s)	506, 632, 917
MalI	GATC	4 cut(s)	5, 319, 910, 1050
MboI	GATC	4 cut(s)	3, 317, 908, 1048
MboII	GAAGA	9 cut(s)	241, 244, 247, 250, 734, 1023, 1026, 1062, 1211
MfeI	CAATTG	1 cut(s)	912
MhlI	GDGCHC	1 cut(s)	1196
MluCI	AATT	9 cut(s)	16, 45, 342, 366, 683, 765, 912, 945, 1244
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	894
MnlI	CCTC	7 cut(s)	54, 401, 407, 516, 661, 687, 943
MroI	TCCGGA	1 cut(s)	1036
MseI	TTAA	2 cut(s)	549, 1112
MslI	CAYNNNNRTG	2 cut(s)	492, 1169
MspA1I	CMGCKG	2 cut(s)	417, 860
MspI	CCGG	2 cut(s)	556, 1037
MspR9I	CCNGG	3 cut(s)	401, 586, 657
MunI	CAATTG	1 cut(s)	912
Mva1269I	GAATGC	2 cut(s)	306, 1164
MvaI	CCWGG	3 cut(s)	401, 586, 657
MwoI	GCNNNNNNNGC	3 cut(s)	206, 827, 1134
NdeII	GATC	4 cut(s)	3, 317, 908, 1048
NlaIV	GGNNCC	1 cut(s)	412
NspI	RCATGY	2 cut(s)	681, 884
PciI	ACATGT	1 cut(s)	880
PctI	GAATGC	2 cut(s)	306, 1164
PfeI	GAWTC	5 cut(s)	10, 272, 559, 875, 1204
PflMI	CCANNNNNTGG	2 cut(s)	56, 935
PkrI	GCNGC	3 cut(s)	202, 859, 1163
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Ppu21I	YACGTR	1 cut(s)	905
PscI	ACATGT	1 cut(s)	880
PsiI	TTATAA	1 cut(s)	27
Psp6I	CCWGG	3 cut(s)	399, 584, 655
PspGI	CCWGG	3 cut(s)	399, 584, 655
PspN4I	GGNNCC	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	2 cut(s)	483, 1108
RsaNI	GTAC	2 cut(s)	482, 1107
RseI	CAYNNNNRTG	2 cut(s)	492, 1169
SaqAI	TTAA	2 cut(s)	549, 1112
SatI	GCNGC	3 cut(s)	201, 858, 1162
Sau3AI	GATC	4 cut(s)	3, 317, 908, 1048
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	3 cut(s)	401, 586, 657
SduI	GDGCHC	1 cut(s)	1196
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	714, 973
SmiMI	CAYNNNNRTG	2 cut(s)	492, 1169
SmlI	CTYRAG	3 cut(s)	614, 995, 1151
SmoI	CTYRAG	3 cut(s)	614, 995, 1151
Sse9I	AATT	9 cut(s)	16, 45, 342, 366, 683, 765, 912, 945, 1244
SsiI	CCGC	2 cut(s)	137, 417
SspMI	CTAG	2 cut(s)	665, 726
StyD4I	CCNGG	3 cut(s)	399, 584, 655
TaaI	ACNGT	3 cut(s)	597, 776, 1106
TaiI	ACGT	1 cut(s)	907
TaqI	TCGA	1 cut(s)	179
TaqII	GACCGA	1 cut(s)	1033
TasI	AATT	9 cut(s)	16, 45, 342, 366, 683, 765, 912, 945, 1244
TatI	WGTACW	1 cut(s)	1106
TfiI	GAWTC	5 cut(s)	10, 272, 559, 875, 1204
Tru1I	TTAA	2 cut(s)	549, 1112
Tru9I	TTAA	2 cut(s)	549, 1112
TscAI	CASTG	3 cut(s)	61, 480, 779
TseI	GCWGC	3 cut(s)	200, 857, 1161
TspDTI	ATGAA	2 cut(s)	1227, 1274
TspRI	CASTG	3 cut(s)	61, 480, 779
Van91I	CCANNNNNTGG	2 cut(s)	56, 935
VneI	GTGCAC	1 cut(s)	1192
XapI	RAATTY	2 cut(s)	45, 342
XceI	RCATGY	2 cut(s)	681, 884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1086
XspI	CTAG	2 cut(s)	665, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.