Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8436185.1

Orthogroup ID

OG0013738

Physical Location & Seq

Genomic Coordinates Reverse (-)

545 .. 1449

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8436185.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atggcagtgaaggttctacatggtgacagtattcagagttacaaaagctttaagagggaatgccaaatcatgtccgaaattaagcaccggaatcttgtaaggatggtaggatatacctggaacacacagttcaaggctcttattcttgaatatgtaggaaatggtaacttggcagagcatctctatcctggtggactagaggaaggagcatgtgaattaacattgtgggaaagattgtctatagctatagatgttgccaatggcttggagtatcttcaagaaggttgtccagtccaaattctacattgtgatttaaaaccagagaacgtgcttattgacaatgatatggtggctcacgtggcagattttgggattggaaagctcatatcagctgacaaacccaatgaattgcatgttagcacaacgcattttctacgaggatcgattggttacattcccccagaatatgggcaaggaaatgaggtatcaactaaaggagatatctatagctttggtgtgatggtgctcgagttgataacaagaaaaagaccaacaagcaatatgtttccagatgaggttgatctaaggaactgggtacattcttcgtacccagaccatgttttggatgtcgttgacagtgcactgaaggagataaaaagtacagagggtgctttgcaagagcttgagagatgctgcattcaaatgcttgatgtagggttgatgtgcacagaagatactccacaagaaagaccctccatgtcttttgttgtgcagaaactgacacagtgtctcaaaagctccaagttcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

270

Amino Acids

30.38

Weight (kDa)

5.2

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013738)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G325600_v2.0.a1 Prupe.6G325700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454791 RchiOBHm_Chr3g0454811
rosa_laevigata	RLG00000025405
rosa_multiflora	Rmu_co8436185.1_g000001 Rmu_sc0001792.1_g000012 Rmu_sc0001792.1_g000014 Rmu_sc0013126.1_g000007
rosa_roxburghii	Rroxscaffold_6G00424710
rosa_rugosa	Rorug03G0002500 Rorug03G0002700
rosa_samantha	Rh3AG062500 Rh3BG064400 Rh3CG063300 Rh3DG064400
rosa_wichuraiana	Rw3G004870 Rw3G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	467, 622
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	665
AcvI	CACGTG	1 cut(s)	358
AfaI	GTAC	3 cut(s)	597, 608, 661
AfiI	CCNNNNNNNGG	2 cut(s)	467, 622
AgsI	TTSAA	4 cut(s)	133, 149, 278, 701
AhdI	GACNNNNNGTC	1 cut(s)	786
AjnI	CCWGG	2 cut(s)	116, 187
AluBI	AGCT	7 cut(s)	48, 245, 382, 392, 510, 682, 798
AluI	AGCT	7 cut(s)	48, 245, 382, 392, 510, 682, 798
Alw21I	GWGCWC	3 cut(s)	528, 643, 728
Alw26I	GTCTC	1 cut(s)	794
Alw44I	GTGCAC	2 cut(s)	639, 724
AlwI	GGATC	1 cut(s)	448
AlwNI	CAGNNNCTG	1 cut(s)	778
Ama87I	CYCGRG	1 cut(s)	527
ApaLI	GTGCAC	2 cut(s)	639, 724
ApeKI	GCWGC	1 cut(s)	693
ApoI	RAATTY	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	527
BaeGI	GKGCMC	2 cut(s)	643, 728
BbrPI	CACGTG	1 cut(s)	358
Bbv12I	GWGCWC	3 cut(s)	528, 643, 728
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	2 cut(s)	97, 514
BciT130I	CCWGG	2 cut(s)	118, 189
BcoDI	GTCTC	1 cut(s)	794
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	3 cut(s)	240, 246, 505
BisI	GCNGC	1 cut(s)	694
BlsI	GCNGC	1 cut(s)	695
Bme1390I	CCNGG	2 cut(s)	118, 189
BmeRI	GACNNNNNGTC	1 cut(s)	786
BmeT110I	CYCGRG	1 cut(s)	527
BmrFI	CCNGG	2 cut(s)	118, 189
BmrI	ACTGGG	1 cut(s)	601
BmsI	GCATC	2 cut(s)	187, 680
BmuI	ACTGGG	1 cut(s)	601
BpuEI	CTTGAG	1 cut(s)	704
Bsa29I	ATCGAT	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 622
Bse1I	ACTGG	2 cut(s)	290, 596
BseBI	CCWGG	2 cut(s)	118, 189
BseCI	ATCGAT	1 cut(s)	443
BseGI	GGATG	2 cut(s)	108, 631
BseLI	CCNNNNNNNGG	2 cut(s)	467, 622
BseNI	ACTGG	2 cut(s)	290, 596
BseSI	GKGCMC	2 cut(s)	643, 728
BseXI	GCAGC	1 cut(s)	680
BsgI	GTGCAG	1 cut(s)	791
BshVI	ATCGAT	1 cut(s)	443
BsiHKAI	GWGCWC	3 cut(s)	528, 643, 728
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	467, 622
BsmAI	GTCTC	1 cut(s)	794
BsmI	GAATGC	2 cut(s)	65, 696
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	3 cut(s)	528, 643, 728
Bsp143I	GATC	2 cut(s)	440, 580
BspDI	ATCGAT	1 cut(s)	443
BspPI	GGATC	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	290, 596
BssMI	GATC	2 cut(s)	440, 580
Bst2UI	CCWGG	2 cut(s)	118, 189
Bst4CI	ACNGT	4 cut(s)	29, 129, 638, 786
BstBAI	YACGTR	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	108, 631
BstKTI	GATC	2 cut(s)	443, 583
BstMAI	GTCTC	1 cut(s)	794
BstMBI	GATC	2 cut(s)	440, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	2 cut(s)	118, 189
BstNSI	RCATGY	2 cut(s)	213, 416
BstSCI	CCNGG	2 cut(s)	116, 187
BstSFI	CTRYAG	3 cut(s)	240, 246, 505
BstSLI	GKGCMC	2 cut(s)	643, 728
BstV1I	GCAGC	1 cut(s)	680
BstXI	CCANNNNNNTGG	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	443
BsuTUI	ATCGAT	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	108, 631
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 641, 643, 791
CaiI	CAGNNNCTG	1 cut(s)	778
ClaI	ATCGAT	1 cut(s)	443
Csp6I	GTAC	3 cut(s)	596, 607, 660
CviAII	CATG	7 cut(s)	20, 70, 210, 413, 617, 757, 808
CviQI	GTAC	3 cut(s)	596, 607, 660
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	2 cut(s)	442, 582
DpnII	GATC	2 cut(s)	440, 580
DraI	TTTAAA	1 cut(s)	315
DriI	GACNNNNNGTC	1 cut(s)	786
Eam1105I	GACNNNNNGTC	1 cut(s)	786
Eco32I	GATATC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	665
Eco72I	CACGTG	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	116, 187
EcoRV	GATATC	1 cut(s)	502
FaeI	CATG	7 cut(s)	23, 73, 213, 416, 620, 760, 811
FatI	CATG	7 cut(s)	19, 69, 209, 412, 616, 756, 807
Fnu4HI	GCNGC	1 cut(s)	694
FokI	GGATG	2 cut(s)	115, 638
Fsp4HI	GCNGC	1 cut(s)	694
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	1 cut(s)	694
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	7 cut(s)	23, 73, 213, 416, 620, 760, 811
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	4 cut(s)	194, 634, 641, 726
Hpy188I	TCNGA	2 cut(s)	36, 76
Hpy188III	TCNNGA	3 cut(s)	146, 278, 569
Hpy8I	GTNNAC	4 cut(s)	194, 634, 641, 726
HpyAV	CCTTC	4 cut(s)	4, 197, 275, 640
HpyCH4III	ACNGT	4 cut(s)	29, 129, 638, 786
HpyCH4IV	ACGT	2 cut(s)	327, 357
HpyCH4V	TGCA	6 cut(s)	412, 641, 676, 696, 726, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	2 cut(s)	327, 357
Hsp92II	CATG	7 cut(s)	23, 73, 213, 416, 620, 760, 811
Kzo9I	GATC	2 cut(s)	440, 580
LmnI	GCTCC	2 cut(s)	206, 803
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	2 cut(s)	187, 680
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	2 cut(s)	327, 357
MaeIII	GTNAC	4 cut(s)	23, 38, 164, 449
MalI	GATC	2 cut(s)	442, 582
MboI	GATC	2 cut(s)	440, 580
MboII	GAAGA	3 cut(s)	266, 594, 743
MhlI	GDGCHC	3 cut(s)	528, 643, 728
MluCI	AATT	4 cut(s)	78, 215, 297, 407
MnlI	CCTC	7 cut(s)	48, 193, 431, 475, 568, 658, 763
MseI	TTAA	4 cut(s)	51, 81, 218, 314
MslI	CAYNNNNRTG	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	2 cut(s)	118, 189
Mva1269I	GAATGC	2 cut(s)	65, 696
MvaI	CCWGG	2 cut(s)	118, 189
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	2 cut(s)	440, 580
NlaIII	CATG	7 cut(s)	23, 73, 213, 416, 620, 760, 811
NmuCI	GTSAC	1 cut(s)	23
NspI	RCATGY	2 cut(s)	213, 416
PaeR7I	CTCGAG	1 cut(s)	527
PctI	GAATGC	2 cut(s)	65, 696
PfeI	GAWTC	1 cut(s)	91
PflMI	CCANNNNNTGG	2 cut(s)	467, 622
PkrI	GCNGC	1 cut(s)	695
PmaCI	CACGTG	1 cut(s)	358
PmlI	CACGTG	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	358
Psp6I	CCWGG	2 cut(s)	116, 187
PspCI	CACGTG	1 cut(s)	358
PspGI	CCWGG	2 cut(s)	116, 187
PspXI	VCTCGAGB	1 cut(s)	527
PstNI	CAGNNNCTG	1 cut(s)	778
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	597, 608, 661
RsaNI	GTAC	3 cut(s)	596, 607, 660
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	4 cut(s)	51, 81, 218, 314
SatI	GCNGC	1 cut(s)	694
Sau3AI	GATC	2 cut(s)	440, 580
ScrFI	CCNGG	2 cut(s)	118, 189
SduI	GDGCHC	3 cut(s)	528, 643, 728
SfaNI	GCATC	2 cut(s)	187, 680
SfcI	CTRYAG	3 cut(s)	240, 246, 505
Sfr274I	CTCGAG	1 cut(s)	527
SlaI	CTCGAG	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	2 cut(s)	527, 683
SmoI	CTYRAG	2 cut(s)	527, 683
Sse9I	AATT	4 cut(s)	78, 215, 297, 407
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	116, 187
TaaI	ACNGT	4 cut(s)	29, 129, 638, 786
TaiI	ACGT	2 cut(s)	330, 360
TaqI	TCGA	2 cut(s)	443, 528
TasI	AATT	4 cut(s)	78, 215, 297, 407
TatI	WGTACW	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	4 cut(s)	51, 81, 218, 314
Tru9I	TTAA	4 cut(s)	51, 81, 218, 314
TscAI	CASTG	4 cut(s)	12, 643, 648, 791
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	693
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	420, 796
TspRI	CASTG	4 cut(s)	12, 643, 648, 791
Van91I	CCANNNNNTGG	2 cut(s)	467, 622
VneI	GTGCAC	2 cut(s)	639, 724
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	2 cut(s)	213, 416
XhoI	CTCGAG	1 cut(s)	527
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.