Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013738

Physical Location & Seq

Genomic Coordinates Reverse (-)

253126 .. 254984

Gene Structure 1859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0002500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAATGATGTCAATGTATCTCTATATGATGGGCATTTGATTCTCCTGTATTATGTAGCTTTCGTTAATACTCAAAATGGGGCATCGGATAACTTAGCTGATGTTGAGCTTAGATTAAATAACGATGATGCAATTCTCGGAACTTCTGTTGGGGAGGTCTCTAATATTGGGCAAACTGAGCAAGTGGGTCAAAATTCTGCAAGCTTGCAGGTTGAAGCAGATGAACCATATGTGGGTCAGGAATTTGAATCAGAAGCAGCTGCACATGCATTTTACAATTCATATGCACTGAGAGTAGGTTTCAGAACACGTGTAAACGATCTATCTCGCTCTAGGGTTGATGGGTCTGTCATTGCTCGAACACTGGTATGTAACAAAGAGGGTTACCGAGTGGCTGATAAGCGTGATAGGAAGAGTGTGAGACCTCGGCCCCCAACTAGGGTTGGTTGCAAGGCAATGATTTCAATGAAGAAACTGAGTAATGGAAACTGGGTGGTTGCAAAGTTTGTCAAGGAGCACGCCCATTCCCTGACTCCTGGAAAGAGTGAAAACGGATTGAATGATGAATCTTCAGATGAACAGATAAAAATCAAAGAATTAACTCAACAGCTGATGGTTGAGCGAAAGAGGTCTGCTTCATATAGAAAAATCATAGACCTCCTATTTAATCACATTGACGACCACACTCAACACCTCTCACAAAAGATCCTGCGCGTTAATGACATTCTCAAAGACATCGCATCCTCTGAAGCAAAAGGCCGTCAAAATCTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

258

Amino Acids

28.9

Weight (kDa)

7.78

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	91 - 178	1.1e-28	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013738)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G325600_v2.0.a1 Prupe.6G325700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454791 RchiOBHm_Chr3g0454811
rosa_laevigata	RLG00000025405
rosa_multiflora	Rmu_co8436185.1_g000001 Rmu_sc0001792.1_g000012 Rmu_sc0001792.1_g000014 Rmu_sc0013126.1_g000007
rosa_roxburghii	Rroxscaffold_6G00424710
rosa_rugosa	Rorug03G0002500 Rorug03G0002700
rosa_samantha	Rh3AG062500 Rh3BG064400 Rh3CG063300 Rh3DG064400
rosa_wichuraiana	Rw3G004870 Rw3G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccII	CGCG	1 cut(s)	714
AciI	CCGC	1 cut(s)	772
AclWI	GGATC	1 cut(s)	700
AcsI	RAATTY	2 cut(s)	193, 242
AcuI	CTGAAG	2 cut(s)	555, 768
AcvI	CACGTG	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	233, 438, 439
AflIII	ACRYGT	2 cut(s)	308, 310
AgsI	TTSAA	4 cut(s)	215, 248, 465, 559
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	6 cut(s)	59, 98, 109, 204, 260, 610
AluI	AGCT	6 cut(s)	59, 98, 109, 204, 260, 610
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	2 cut(s)	163, 415
AlwI	GGATC	1 cut(s)	700
AoxI	GGCC	2 cut(s)	428, 757
ApeKI	GCWGC	2 cut(s)	257, 260
ApoI	RAATTY	2 cut(s)	193, 242
AspLEI	GCGC	1 cut(s)	714
AspS9I	GGNCC	1 cut(s)	429
BbrPI	CACGTG	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	247, 269
BccI	CCATC	3 cut(s)	23, 335, 607
BceAI	ACGGC	1 cut(s)	744
BciT130I	CCWGG	1 cut(s)	537
BcoDI	GTCTC	2 cut(s)	163, 415
BfaI	CTAG	3 cut(s)	333, 438, 775
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	258, 261
BlsI	GCNGC	2 cut(s)	259, 262
Bme1390I	CCNGG	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	537
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	3 cut(s)	92, 118, 749
BmuI	ACTGGG	1 cut(s)	499
BsaAI	YACGTR	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	587
BsaI	GGTCTC	2 cut(s)	163, 415
BsaJI	CCNNGG	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 438, 439
Bse1I	ACTGG	2 cut(s)	369, 494
Bse3DI	GCAATG	2 cut(s)	351, 462
Bse8I	GATNNNNATC	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	740
BseJI	GATNNNNATC	1 cut(s)	587
BseLI	CCNNNNNNNGG	3 cut(s)	233, 438, 439
BseMI	GCAATG	2 cut(s)	351, 462
BseMII	CTCAG	3 cut(s)	168, 281, 467
BseNI	ACTGG	2 cut(s)	369, 494
BseXI	GCAGC	2 cut(s)	247, 269
BsgI	GTGCAG	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	2 cut(s)	430, 759
BsiHKAI	GWGCWC	1 cut(s)	519
BslI	CCNNNNNNNGG	3 cut(s)	233, 438, 439
BsmAI	GTCTC	2 cut(s)	163, 415
BsnI	GGCC	2 cut(s)	430, 759
Bso31I	GGTCTC	2 cut(s)	163, 415
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	319, 705
BspACI	CCGC	1 cut(s)	772
BspANI	GGCC	2 cut(s)	430, 759
BspCNI	CTCAG	3 cut(s)	169, 282, 468
BspFNI	CGCG	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	431
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	700
BspTNI	GGTCTC	2 cut(s)	163, 415
BsrDI	GCAATG	2 cut(s)	351, 462
BsrI	ACTGG	2 cut(s)	369, 494
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	2 cut(s)	319, 705
Bst2UI	CCWGG	1 cut(s)	537
Bst6I	CTCTTC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	202, 206, 519
BstDEI	CTNAG	5 cut(s)	94, 110, 177, 290, 476
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	740
BstFNI	CGCG	1 cut(s)	714
BstHHI	GCGC	1 cut(s)	714
BstKTI	GATC	2 cut(s)	322, 708
BstMAI	GTCTC	2 cut(s)	163, 415
BstMBI	GATC	2 cut(s)	319, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 266
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	269
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	535
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	247, 269
BstX2I	RGATCY	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	705
BsuRI	GGCC	2 cut(s)	430, 759
BtgZI	GCGATG	1 cut(s)	721
BtsCI	GGATG	1 cut(s)	740
BtsIMutI	CAGTG	2 cut(s)	287, 362
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	3 cut(s)	202, 206, 519
CfoI	GCGC	1 cut(s)	714
Cfr13I	GGNCC	1 cut(s)	429
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	9 cut(s)	59, 98, 109, 204, 260, 395, 430, 610, 759
CviKI_1	RGCY	9 cut(s)	59, 98, 109, 204, 260, 395, 430, 610, 759
DdeI	CTNAG	5 cut(s)	94, 110, 177, 290, 476
DpnI	GATC	2 cut(s)	321, 707
DpnII	GATC	2 cut(s)	319, 705
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco31I	GGTCTC	2 cut(s)	163, 415
Eco57I	CTGAAG	2 cut(s)	555, 768
Eco72I	CACGTG	1 cut(s)	311
Eco91I	GGTNACC	1 cut(s)	383
EcoO65I	GGTNACC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	535
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	1 cut(s)	269
FatI	CATG	1 cut(s)	265
FauNDI	CATATG	2 cut(s)	229, 283
Fnu4HI	GCNGC	2 cut(s)	258, 261
FokI	GGATG	1 cut(s)	727
Fsp4HI	GCNGC	2 cut(s)	258, 261
FspBI	CTAG	3 cut(s)	333, 438, 775
GlaI	GCGC	1 cut(s)	713
GluI	GCNGC	2 cut(s)	258, 261
HaeIII	GGCC	2 cut(s)	430, 759
HhaI	GCGC	1 cut(s)	714
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	712
HinP1I	GCGC	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	4 cut(s)	40, 248, 532, 566
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	6 cut(s)	88, 140, 253, 305, 574, 748
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	8 cut(s)	131, 200, 208, 263, 269, 287, 450, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 266
HpyF3I	CTNAG	5 cut(s)	94, 110, 177, 290, 476
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	1 cut(s)	712
Kzo9I	GATC	2 cut(s)	319, 705
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	9 cut(s)	59, 194, 224, 350, 475, 522, 542, 549, 722
Lsp1109I	GCAGC	2 cut(s)	247, 269
LweI	GCATC	3 cut(s)	92, 118, 749
MaeI	CTAG	3 cut(s)	333, 438, 775
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	371, 383
MalI	GATC	2 cut(s)	321, 707
MboI	GATC	2 cut(s)	319, 705
MboII	GAAGA	3 cut(s)	424, 481, 561
MflI	RGATCY	1 cut(s)	705
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	5 cut(s)	132, 193, 242, 277, 596
MlyI	GAGTC	1 cut(s)	526
MnlI	CCTC	7 cut(s)	148, 373, 435, 621, 668, 704, 754
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	5 cut(s)	66, 116, 599, 666, 717
MslI	CAYNNNNRTG	1 cut(s)	367
MspA1I	CMGCKG	2 cut(s)	260, 610
MspR9I	CCNGG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	178, 266
NdeI	CATATG	2 cut(s)	229, 283
NdeII	GATC	2 cut(s)	319, 705
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	431
NmeAIII	GCCGAG	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	40, 248, 566
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	2 cut(s)	259, 262
PleI	GAGTC	1 cut(s)	526
PmaCI	CACGTG	1 cut(s)	311
PmlI	CACGTG	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	526
Ppu21I	YACGTR	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	535
PspCI	CACGTG	1 cut(s)	311
PspEI	GGTNACC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	705
PvuII	CAGCTG	2 cut(s)	260, 610
RseI	CAYNNNNRTG	1 cut(s)	367
SaqAI	TTAA	5 cut(s)	66, 116, 599, 666, 717
SatI	GCNGC	2 cut(s)	258, 261
Sau3AI	GATC	2 cut(s)	319, 705
Sau96I	GGNCC	1 cut(s)	429
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	3 cut(s)	92, 118, 749
SmiMI	CAYNNNNRTG	1 cut(s)	367
Sse9I	AATT	5 cut(s)	132, 193, 242, 277, 596
SsiI	CCGC	1 cut(s)	772
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	3 cut(s)	333, 438, 775
StyD4I	CCNGG	1 cut(s)	535
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	358
TasI	AATT	5 cut(s)	132, 193, 242, 277, 596
TfiI	GAWTC	3 cut(s)	40, 248, 566
Tru1I	TTAA	5 cut(s)	66, 116, 599, 666, 717
Tru9I	TTAA	5 cut(s)	66, 116, 599, 666, 717
TscAI	CASTG	2 cut(s)	294, 369
TseI	GCWGC	2 cut(s)	257, 260
TspDTI	ATGAA	7 cut(s)	17, 237, 270, 482, 579, 591, 627
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	2 cut(s)	294, 369
XapI	RAATTY	2 cut(s)	193, 242
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	3 cut(s)	333, 438, 775
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.