Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016973

Physical Location & Seq

Genomic Coordinates Reverse (-)

15766666 .. 15769615

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43566

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCTGACATTTGAGGAAGAGGCAAGTCTACTTTCATCGATACAATTTGGTCCTCAAGATGGATGGCTTTCGTCATTTTACTCATGCTTGATAAAAAAGGTAAACATAAGTGAAACTCCAATATGCCGCAGTTTAAGTGGAAAGTTATTAAAGATCTCTATATCTTTATACTTTTTAGGGCCTTCTTTTTACTTAATAAAGATTTACTTTAAAGCATTTACTTGCTGTGTTTTCCAGTATGACAAAGAAAATGTTGTAGAAGCAAACTTTGGAGAACTTGAAAAAGAGAGATGTAACAGTAACACTTCCGATCTTTCGTTCATTCACACTCTGAAAACCAACACTGACCTTCTGGTGTGCAAAGCAGAATACTACCAGTGTGGTGAATATCAAAAAAGCTTTGAACTTACCTCTTTCCTACTTGAAAAAGACACTTTCCATCTCAAAAGTACATTAGTGCATCTAGCAGCTGCGATGGAACTTGGGAATTCAAATGAGCTCTATCTTATGGCATGCAATTTAGTGAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTTCTGTTGGCTGTTACTACTATTGTATAAAAAAGTATGATCAGTCACGCCGTTATTTCAGTAAGGCTACCAATGTCGATGGAAACTTTCCACCTGCATGGATAGGATATGGGAATGCTTATTCTGCTCAAGATGAGGGAGATCAAGCTATGTCAATTTATCGCACTGCTGCTCGTTTGTTTCCAGGGTGTCATTTACCAACTTTGTACATTGGAATGGAGTACATGCGAACCCACAACTACAAACTTGCTGAGCAGGGTACTCTTAATGATGGAAGAGTAATTGCCGTGAAGCAATTGTCTGCAGCATCCTGGCAAGGAAAAAATGAGTTTCTCCCTTGTTGTGTGTTCTTGCAGGCAACGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032875 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_2 TPR_3 TPR_7 TPR_8

Protein Analysis

307

Amino Acids

35.04

Weight (kDa)

6.52

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337671 RchiOBHm_Chr3g0469831
rosa_rugosa	Rorug01G0382100 Rorug06G0145400
rosa_samantha	Rh1AG081800 Rh3AG153900 Rh3BG178000 Rh3CG168700 Rh3DG298300 Rh4AG193800 Rh5DG475100 Rh7BG197900
rosa_wichuraiana	Rw2G033380 Rw7G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	487
AfaI	GTAC	4 cut(s)	451, 764, 779, 817
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	4 cut(s)	281, 404, 425, 492
AjnI	CCWGG	2 cut(s)	739, 866
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	4 cut(s)	399, 470, 499, 704
AluI	AGCT	4 cut(s)	399, 470, 499, 704
Alw21I	GWGCWC	1 cut(s)	501
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	4 cut(s)	467, 470, 725, 860
ApoI	RAATTY	1 cut(s)	487
AspS9I	GGNCC	2 cut(s)	50, 179
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	4 cut(s)	457, 479, 712, 872
BccI	CCATC	6 cut(s)	53, 57, 447, 469, 629, 821
BceAI	ACGGC	2 cut(s)	591, 827
BciT130I	CCWGG	2 cut(s)	741, 868
BclI	TGATCA	1 cut(s)	595
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	858
BfuAI	ACCTGC	1 cut(s)	658
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	5 cut(s)	127, 468, 471, 726, 861
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	5 cut(s)	128, 469, 472, 727, 862
Bme1390I	CCNGG	2 cut(s)	741, 868
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	50, 179
BmrFI	CCNGG	2 cut(s)	741, 868
BmsI	GCATC	2 cut(s)	469, 872
Bpu1102I	GCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	2 cut(s)	39, 669
Bsa29I	ATCGAT	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	235, 376
BseBI	CCWGG	2 cut(s)	741, 868
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	740
BseGI	GGATG	2 cut(s)	68, 863
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	2 cut(s)	235, 376
BseXI	GCAGC	4 cut(s)	457, 479, 712, 872
BshFI	GGCC	1 cut(s)	181
BshVI	ATCGAT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	501
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp1407I	TGTACA	1 cut(s)	762
Bsp143I	GATC	4 cut(s)	153, 310, 595, 697
Bsp1720I	GCTNAGC	1 cut(s)	807
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	799
BspDI	ATCGAT	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	658
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	2 cut(s)	235, 376
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	4 cut(s)	153, 310, 595, 697
Bst2UI	CCWGG	2 cut(s)	741, 868
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	2 cut(s)	12, 826
BstAUI	TGTACA	1 cut(s)	762
BstC8I	GCNNGC	2 cut(s)	514, 912
BstDEI	CTNAG	1 cut(s)	807
BstF5I	GGATG	2 cut(s)	68, 863
BstKTI	GATC	4 cut(s)	156, 313, 598, 700
BstMBI	GATC	4 cut(s)	153, 310, 595, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstNI	CCWGG	2 cut(s)	741, 868
BstNSI	RCATGY	2 cut(s)	516, 784
BstSCI	CCNGG	2 cut(s)	739, 866
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	4 cut(s)	457, 479, 712, 872
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	181
BsuTUI	ATCGAT	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	488
BtsCI	GGATG	2 cut(s)	68, 863
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	3 cut(s)	342, 383, 720
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	2 cut(s)	514, 912
Cfr13I	GGNCC	2 cut(s)	50, 179
ClaI	ATCGAT	1 cut(s)	38
Csp6I	GTAC	4 cut(s)	450, 763, 778, 816
CviAII	CATG	5 cut(s)	84, 513, 552, 654, 781
CviJI	RGCY	9 cut(s)	67, 181, 399, 470, 499, 545, 567, 623, 704
CviKI_1	RGCY	9 cut(s)	67, 181, 399, 470, 499, 545, 567, 623, 704
CviQI	GTAC	4 cut(s)	450, 763, 778, 816
DdeI	CTNAG	1 cut(s)	807
DpnI	GATC	4 cut(s)	155, 312, 597, 699
DpnII	GATC	4 cut(s)	153, 310, 595, 697
DraI	TTTAAA	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	12, 826
EarI	CTCTTC	2 cut(s)	12, 826
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	499
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	739, 866
EcoT38I	GRGCYC	1 cut(s)	501
FaeI	CATG	5 cut(s)	87, 516, 555, 657, 784
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	5 cut(s)	83, 512, 551, 653, 780
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	5 cut(s)	127, 468, 471, 726, 861
FokI	GGATG	2 cut(s)	75, 850
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	5 cut(s)	127, 468, 471, 726, 861
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	5 cut(s)	127, 468, 471, 726, 861
HaeIII	GGCC	1 cut(s)	181
Hin1II	CATG	5 cut(s)	87, 516, 555, 657, 784
HindIII	AAGCTT	1 cut(s)	397
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	29, 103
Hpy188I	TCNGA	2 cut(s)	310, 333
Hpy188III	TCNNGA	2 cut(s)	56, 686
Hpy8I	GTNNAC	2 cut(s)	29, 103
HpyAV	CCTTC	3 cut(s)	192, 359, 520
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	917
HpyCH4V	TGCA	6 cut(s)	360, 460, 516, 653, 860, 910
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	1 cut(s)	807
HpySE526I	ACGT	1 cut(s)	917
Hsp92II	CATG	5 cut(s)	87, 516, 555, 657, 784
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	153, 310, 595, 697
Lsp1109I	GCAGC	4 cut(s)	457, 479, 712, 872
LweI	GCATC	2 cut(s)	469, 872
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	917
MaeIII	GTNAC	4 cut(s)	293, 299, 569, 600
MalI	GATC	4 cut(s)	155, 312, 597, 699
MboI	GATC	4 cut(s)	153, 310, 595, 697
MboII	GAAGA	2 cut(s)	29, 843
MfeI	CAATTG	1 cut(s)	851
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	6 cut(s)	44, 487, 517, 711, 837, 851
MnlI	CCTC	6 cut(s)	7, 13, 63, 421, 546, 685
MseI	TTAA	6 cut(s)	134, 149, 194, 210, 822, 922
MslI	CAYNNNNRTG	2 cut(s)	652, 770
MspA1I	CMGCKG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	741, 868
MunI	CAATTG	1 cut(s)	851
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	2 cut(s)	741, 868
MwoI	GCNNNNNNNGC	1 cut(s)	680
NdeII	GATC	4 cut(s)	153, 310, 595, 697
NlaIII	CATG	5 cut(s)	87, 516, 555, 657, 784
NmuCI	GTSAC	1 cut(s)	600
NspI	RCATGY	2 cut(s)	516, 784
PaeI	GCATGC	1 cut(s)	516
PaqCI	CACCTGC	1 cut(s)	658
PctI	GAATGC	1 cut(s)	676
PkrI	GCNGC	5 cut(s)	128, 469, 472, 727, 862
Psp124BI	GAGCTC	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	739, 866
PspGI	CCWGG	2 cut(s)	739, 866
PspPI	GGNCC	2 cut(s)	50, 179
PstI	CTGCAG	1 cut(s)	862
PsuI	RGATCY	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	4 cut(s)	451, 764, 779, 817
RsaNI	GTAC	4 cut(s)	450, 763, 778, 816
RseI	CAYNNNNRTG	2 cut(s)	652, 770
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	6 cut(s)	134, 149, 194, 210, 822, 922
SatI	GCNGC	5 cut(s)	127, 468, 471, 726, 861
Sau3AI	GATC	4 cut(s)	153, 310, 595, 697
Sau96I	GGNCC	2 cut(s)	50, 179
ScrFI	CCNGG	2 cut(s)	741, 868
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	9 cut(s)	102, 351, 401, 413, 472, 501, 652, 706, 920
SfaNI	GCATC	2 cut(s)	469, 872
SfcI	CTRYAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	652, 770
SmlI	CTYRAG	2 cut(s)	54, 684
SmoI	CTYRAG	2 cut(s)	54, 684
SphI	GCATGC	1 cut(s)	516
Sse9I	AATT	6 cut(s)	44, 487, 517, 711, 837, 851
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	1 cut(s)	464
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	739, 866
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	1 cut(s)	920
TaqI	TCGA	2 cut(s)	38, 633
TasI	AATT	6 cut(s)	44, 487, 517, 711, 837, 851
TatI	WGTACW	3 cut(s)	449, 762, 777
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	6 cut(s)	134, 149, 194, 210, 822, 922
Tru9I	TTAA	6 cut(s)	134, 149, 194, 210, 822, 922
TscAI	CASTG	3 cut(s)	349, 383, 727
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	4 cut(s)	467, 470, 725, 860
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	2 cut(s)	24, 310
TspRI	CASTG	3 cut(s)	349, 383, 727
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	2 cut(s)	516, 784
XmiI	GTMKAC	1 cut(s)	28
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.