Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0016973

Physical Location & Seq

Genomic Coordinates Reverse (-)

54705756 .. 54719070

Gene Structure 13315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G033380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGAGTACCACAGTAGAACCTAAAACCAGGATATCAAATATCCCACGTCTTACTACTGGTTTCCTCACCAGCCAGAAGAACCATTCACAACAGATTCACAAGGTTACTGGGAATGAAGTAACTTTTCCGATTGAATGTAAATTGTCTGGTCCGAAAAAACCAGCAGAAAATGCCAAAGCAGCAATCTATGAAAGCAGAAAGACTGGAGATATCAGTCTAAAATTTGACGATCACAGAAAAAGTGACGTCTTTCCTGAAAATATCAGGATAAACAAAAATCTTCTCAGAAGAAGTTACAACACTAGAGAAGCTAGTGTTAGCGGTACCAAATACTCTGAAGAACCATCAGATGAGAAGGCTAAAGAAACGGCCAAATCAAATATCTATGCTCTTAAAATCTGTGACATGAGATATTTTGAAGAGTACTTGAATGAATTTCAAGAATATTACTTACTTCGAATCAAGACAGATGAATGTTTTGAAAATCAAAAACTGGGAAGAAAGAAAGACAGAATCATCAATGCAAGTCTACTTTCATCGATACAATTTGGTCCTCAAGATGGATGGCTTTCGTCATTTTACTCATGCTTGATAAAAAAGTATGACAAAGAAAATGTTGTAGAAGCAAACTTTGGAGAACTTGAAAAAGAGAGATGTAACAGTAACACTTCCGATCTTTCGTTCATTCACACTCTGAAAACCAACACTGACCTTCTGGTGTGCAAAGCAGAATACTACCATCAGTGTGGTGAATATCAAAAATGCTTTGAACTTACCTCTTTCCTACTTGAAAAAGACACTTTCCATCTCAAAAGTACATTAGTGCATCTAGCAGCTGCGATGGAACTTGGGAATTCAAATGAGCTCTATCTTATGGCATGCAATTTAGTGAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTTCTGTTGGCTGTTACTACTATTGTATAAAAAAGTATGATCAGTCACGCCGTTATTTCAGTAAGGCTACCAATGTCGATGGAAACTTTCCACCTGCATGGATAGGATATGAGAATGCTTATTCTGCTCAAGATGAGGGAGATCAAGCTATGTCAATTTATCGCACTGCTGCTCGTTTGTTTCCAGGGTGTCATTTACCAACTTTGTACATTGGAATGGAGTACATGCGAACCCACAGCTACAAACTTGCTGAGCAGATTGTTCATGATCCACTAGTTTATTTTAGCTTCAGAAAAGGAGAAAGGGTGTACTGGGCAGACAGGCTTACCCAGGCCAAAAGTGTAGTAGGTCCAAACTTTACTACCCAATATCAGAGATCCTTTCCTTTTGTTGCAAATAATAACAATGAGATTTCATTTTGTTGCATATATGAGATTATTCTTTCTTACAAGCTTGTTACTTACACTACTCAATTGACTCTTGCTTTGCTGTGTTTTACCGTCGTTGGATCTAAATCAAATGGTGTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032875 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_2 TPR_3 TPR_7 TPR_8

Protein Analysis

484

Amino Acids

55.84

Weight (kDa)

8.33

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337671 RchiOBHm_Chr3g0469831
rosa_rugosa	Rorug01G0382100 Rorug06G0145400
rosa_samantha	Rh1AG081800 Rh3AG153900 Rh3BG178000 Rh3CG168700 Rh3DG298300 Rh4AG193800 Rh5DG475100 Rh7BG197900
rosa_wichuraiana	Rw2G033380 Rw7G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1024
AatII	GACGTC	1 cut(s)	249
Acc36I	ACCTGC	1 cut(s)	1024
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	529
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	3 cut(s)	1184, 1293, 1438
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	221, 434, 853
AcuI	CTGAAG	2 cut(s)	357, 1195
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	7 cut(s)	7, 325, 425, 817, 1130, 1145, 1232
AfiI	CCNNNNNNNGG	1 cut(s)	560
AgsI	TTSAA	9 cut(s)	134, 419, 430, 440, 482, 644, 770, 791, 858
AhlI	ACTAGT	1 cut(s)	1195
AjiI	CACGTC	1 cut(s)	47
AjnI	CCWGG	3 cut(s)	26, 1105, 1251
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	7 cut(s)	311, 836, 865, 1070, 1161, 1209, 1375
AluI	AGCT	7 cut(s)	311, 836, 865, 1070, 1161, 1209, 1375
Alw21I	GWGCWC	1 cut(s)	867
AlwI	GGATC	3 cut(s)	1184, 1293, 1438
AoxI	GGCC	2 cut(s)	369, 1254
ApeKI	GCWGC	4 cut(s)	179, 833, 836, 1091
ApoI	RAATTY	3 cut(s)	221, 434, 853
ArsI	GACNNNNNNTTYG	2 cut(s)	1390, 1422
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	149, 551, 1271
AsuHPI	GGTGA	2 cut(s)	58, 761
AsuII	TTCGAA	1 cut(s)	457
AvaII	GGWCC	3 cut(s)	149, 551, 1271
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	867
Bbv12I	GWGCWC	1 cut(s)	867
BbvI	GCAGC	4 cut(s)	191, 823, 845, 1078
BccI	CCATC	7 cut(s)	352, 554, 558, 747, 813, 835, 995
BceAI	ACGGC	2 cut(s)	384, 957
BciT130I	CCWGG	3 cut(s)	28, 1107, 1253
BclI	TGATCA	1 cut(s)	961
BcuI	ACTAGT	1 cut(s)	1195
BfaI	CTAG	4 cut(s)	303, 312, 830, 1196
BfuAI	ACCTGC	1 cut(s)	1024
BisI	GCNGC	4 cut(s)	180, 834, 837, 1092
BlpI	GCTNAGC	1 cut(s)	1173
BlsI	GCNGC	4 cut(s)	181, 835, 838, 1093
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	3 cut(s)	28, 1107, 1253
Bme18I	GGWCC	3 cut(s)	149, 551, 1271
BmgBI	CACGTC	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	149, 551, 1271
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	3 cut(s)	28, 1107, 1253
BmrI	ACTGGG	3 cut(s)	117, 503, 1243
BmsI	GCATC	1 cut(s)	835
BmuI	ACTGGG	3 cut(s)	117, 503, 1243
BpmI	CTGGAG	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	1173
Bpu14I	TTCGAA	1 cut(s)	457
BpuEI	CTTGAG	2 cut(s)	540, 1035
Bsa29I	ATCGAT	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	1435
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	1106, 1251
BsaXI	ACNNNNNCTCC	2 cut(s)	1212, 1242
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse1I	ACTGG	5 cut(s)	61, 112, 208, 498, 1238
Bse8I	GATNNNNATC	1 cut(s)	1435
BseBI	CCWGG	3 cut(s)	28, 1107, 1253
BseCI	ATCGAT	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	1106, 1251
BseGI	GGATG	1 cut(s)	569
BseJI	GATNNNNATC	1 cut(s)	1435
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseMII	CTCAG	2 cut(s)	298, 1164
BseNI	ACTGG	5 cut(s)	61, 112, 208, 498, 1238
BseXI	GCAGC	4 cut(s)	191, 823, 845, 1078
BshFI	GGCC	2 cut(s)	371, 1256
BshNI	GGYRCC	1 cut(s)	323
BshVI	ATCGAT	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	867
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	2 cut(s)	371, 1256
Bsp119I	TTCGAA	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp1407I	TGTACA	1 cut(s)	1128
Bsp143I	GATC	7 cut(s)	229, 673, 961, 1063, 1189, 1298, 1430
Bsp1720I	GCTNAGC	1 cut(s)	1173
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	2 cut(s)	371, 1256
BspCNI	CTCAG	2 cut(s)	297, 1165
BspDI	ATCGAT	1 cut(s)	539
BspHI	TCATGA	1 cut(s)	1186
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	1024
BspPI	GGATC	3 cut(s)	1184, 1293, 1438
BspT104I	TTCGAA	1 cut(s)	457
BspT107I	GGYRCC	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	1128
BsrI	ACTGG	5 cut(s)	61, 112, 208, 498, 1238
BssECI	CCNNGG	2 cut(s)	1106, 1251
BssMI	GATC	7 cut(s)	229, 673, 961, 1063, 1189, 1298, 1430
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	28, 1107, 1253
Bst4CI	ACNGT	3 cut(s)	13, 662, 1423
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	1128
BstBI	TTCGAA	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	880
BstDEI	CTNAG	2 cut(s)	284, 1173
BstF5I	GGATG	1 cut(s)	569
BstKTI	GATC	7 cut(s)	232, 676, 964, 1066, 1192, 1301, 1433
BstMBI	GATC	7 cut(s)	229, 673, 961, 1063, 1189, 1298, 1430
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 179, 1046
BstNI	CCWGG	3 cut(s)	28, 1107, 1253
BstNSI	RCATGY	2 cut(s)	882, 1150
BstSCI	CCNGG	3 cut(s)	26, 1105, 1251
BstV1I	GCAGC	4 cut(s)	191, 823, 845, 1078
BstX2I	RGATCY	2 cut(s)	1298, 1430
BstXI	CCANNNNNNTGG	2 cut(s)	746, 1020
BstYI	RGATCY	2 cut(s)	1298, 1430
Bsu15I	ATCGAT	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	371, 1256
BsuTUI	ATCGAT	1 cut(s)	539
BtgZI	GCGATG	1 cut(s)	854
BtrI	CACGTC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	569
BtsI	GCAGTG	1 cut(s)	1086
BtsIMutI	CAGTG	3 cut(s)	705, 749, 1086
BveI	ACCTGC	1 cut(s)	1024
Cac8I	GCNNGC	1 cut(s)	880
CciI	TCATGA	1 cut(s)	1186
Cfr13I	GGNCC	3 cut(s)	149, 551, 1271
ClaI	ATCGAT	1 cut(s)	539
Csp6I	GTAC	7 cut(s)	6, 324, 424, 816, 1129, 1144, 1231
CviAII	CATG	7 cut(s)	406, 585, 879, 918, 1020, 1147, 1187
CviQI	GTAC	7 cut(s)	6, 324, 424, 816, 1129, 1144, 1231
DdeI	CTNAG	2 cut(s)	284, 1173
DpnI	GATC	7 cut(s)	231, 675, 963, 1065, 1191, 1300, 1432
DpnII	GATC	7 cut(s)	229, 673, 961, 1063, 1189, 1298, 1430
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	865
Eco24I	GRGCYC	1 cut(s)	867
Eco32I	GATATC	2 cut(s)	33, 211
Eco47I	GGWCC	3 cut(s)	149, 551, 1271
Eco53kI	GAGCTC	1 cut(s)	865
Eco57I	CTGAAG	2 cut(s)	357, 1195
EcoICRI	GAGCTC	1 cut(s)	865
EcoRI	GAATTC	1 cut(s)	853
EcoRII	CCWGG	3 cut(s)	26, 1105, 1251
EcoRV	GATATC	2 cut(s)	33, 211
EcoT38I	GRGCYC	1 cut(s)	867
FaeI	CATG	7 cut(s)	409, 588, 882, 921, 1023, 1150, 1190
FatI	CATG	7 cut(s)	405, 584, 878, 917, 1019, 1146, 1186
FbaI	TGATCA	1 cut(s)	961
FblI	GTMKAC	1 cut(s)	529
Fnu4HI	GCNGC	4 cut(s)	180, 834, 837, 1092
FokI	GGATG	1 cut(s)	576
FriOI	GRGCYC	1 cut(s)	867
Fsp4HI	GCNGC	4 cut(s)	180, 834, 837, 1092
FspBI	CTAG	4 cut(s)	303, 312, 830, 1196
GluI	GCNGC	4 cut(s)	180, 834, 837, 1092
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	371, 1256
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	7 cut(s)	409, 588, 882, 921, 1023, 1150, 1190
HindIII	AAGCTT	1 cut(s)	1373
HinfI	GANTC	4 cut(s)	94, 459, 513, 1399
HphI	GGTGA	2 cut(s)	58, 761
Hpy166II	GTNNAC	2 cut(s)	530, 1231
Hpy188I	TCNGA	9 cut(s)	129, 153, 287, 337, 349, 673, 696, 1214, 1296
Hpy188III	TCNNGA	7 cut(s)	254, 265, 440, 463, 557, 1052, 1187
Hpy8I	GTNNAC	2 cut(s)	530, 1231
Hpy99I	CGWCG	1 cut(s)	1427
HpyAV	CCTTC	3 cut(s)	349, 722, 886
HpyCH4III	ACNGT	3 cut(s)	13, 662, 1423
HpyCH4IV	ACGT	2 cut(s)	46, 246
HpyCH4V	TGCA	7 cut(s)	524, 723, 826, 882, 1019, 1316, 1347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 179, 1046
HpyF3I	CTNAG	2 cut(s)	284, 1173
HpySE526I	ACGT	2 cut(s)	46, 246
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	7 cut(s)	409, 588, 882, 921, 1023, 1150, 1190
KpnI	GGTACC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	7 cut(s)	229, 673, 961, 1063, 1189, 1298, 1430
Lsp1109I	GCAGC	4 cut(s)	191, 823, 845, 1078
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	4 cut(s)	303, 312, 830, 1196
MaeII	ACGT	2 cut(s)	46, 246
MalI	GATC	7 cut(s)	231, 675, 963, 1065, 1191, 1300, 1432
MboI	GATC	7 cut(s)	229, 673, 961, 1063, 1189, 1298, 1430
MboII	GAAGA	6 cut(s)	88, 272, 300, 350, 431, 510
MfeI	CAATTG	1 cut(s)	1394
MflI	RGATCY	2 cut(s)	1298, 1430
MhlI	GDGCHC	1 cut(s)	867
MluCI	AATT	8 cut(s)	140, 221, 434, 545, 853, 883, 1077, 1394
MlyI	GAGTC	1 cut(s)	1393
MmeI	TCCRAC	1 cut(s)	1408
MnlI	CCTC	5 cut(s)	74, 564, 787, 912, 1051
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	3 cut(s)	744, 1018, 1136
MspA1I	CMGCKG	1 cut(s)	836
MspR9I	CCNGG	3 cut(s)	28, 1107, 1253
MunI	CAATTG	1 cut(s)	1394
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	3 cut(s)	28, 1107, 1253
MwoI	GCNNNNNNNGC	3 cut(s)	170, 179, 1046
NdeII	GATC	7 cut(s)	229, 673, 961, 1063, 1189, 1298, 1430
NlaIII	CATG	7 cut(s)	409, 588, 882, 921, 1023, 1150, 1190
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	3 cut(s)	242, 401, 966
NspI	RCATGY	2 cut(s)	882, 1150
NspV	TTCGAA	1 cut(s)	457
PaeI	GCATGC	1 cut(s)	882
PagI	TCATGA	1 cut(s)	1186
PaqCI	CACCTGC	1 cut(s)	1024
PctI	GAATGC	1 cut(s)	1042
PfeI	GAWTC	3 cut(s)	94, 459, 513
PkrI	GCNGC	4 cut(s)	181, 835, 838, 1093
PleI	GAGTC	1 cut(s)	1393
PpsI	GAGTC	1 cut(s)	1393
Psp124BI	GAGCTC	1 cut(s)	867
Psp6I	CCWGG	3 cut(s)	26, 1105, 1251
PspGI	CCWGG	3 cut(s)	26, 1105, 1251
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	3 cut(s)	149, 551, 1271
PsuI	RGATCY	2 cut(s)	1298, 1430
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	7 cut(s)	7, 325, 425, 817, 1130, 1145, 1232
RsaNI	GTAC	7 cut(s)	6, 324, 424, 816, 1129, 1144, 1231
RseI	CAYNNNNRTG	3 cut(s)	744, 1018, 1136
SacI	GAGCTC	1 cut(s)	867
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	4 cut(s)	180, 834, 837, 1092
Sau3AI	GATC	7 cut(s)	229, 673, 961, 1063, 1189, 1298, 1430
Sau96I	GGNCC	3 cut(s)	149, 551, 1271
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	1 cut(s)	1393
ScrFI	CCNGG	3 cut(s)	28, 1107, 1253
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	1 cut(s)	835
SfuI	TTCGAA	1 cut(s)	457
SinI	GGWCC	3 cut(s)	149, 551, 1271
SmiMI	CAYNNNNRTG	3 cut(s)	744, 1018, 1136
SmlI	CTYRAG	2 cut(s)	555, 1050
SmoI	CTYRAG	2 cut(s)	555, 1050
SpeI	ACTAGT	1 cut(s)	1195
SphI	GCATGC	1 cut(s)	882
Sse9I	AATT	8 cut(s)	140, 221, 434, 545, 853, 883, 1077, 1394
SsiI	CCGC	1 cut(s)	321
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	4 cut(s)	303, 312, 830, 1196
SstI	GAGCTC	1 cut(s)	867
StyD4I	CCNGG	3 cut(s)	26, 1105, 1251
TaaI	ACNGT	3 cut(s)	13, 662, 1423
TaiI	ACGT	2 cut(s)	49, 249
TaqI	TCGA	3 cut(s)	457, 539, 999
TasI	AATT	8 cut(s)	140, 221, 434, 545, 853, 883, 1077, 1394
TatI	WGTACW	5 cut(s)	423, 815, 1128, 1143, 1230
TfiI	GAWTC	3 cut(s)	94, 459, 513
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	3 cut(s)	712, 749, 1093
TseFI	GTSAC	3 cut(s)	242, 401, 966
TseI	GCWGC	4 cut(s)	179, 833, 836, 1091
Tsp45I	GTSAC	3 cut(s)	242, 401, 966
TspDTI	ATGAA	8 cut(s)	129, 204, 447, 486, 525, 673, 1175, 1326
TspRI	CASTG	3 cut(s)	712, 749, 1093
VpaK11BI	GGWCC	3 cut(s)	149, 551, 1271
XapI	RAATTY	3 cut(s)	221, 434, 853
XceI	RCATGY	2 cut(s)	882, 1150
XmiI	GTMKAC	1 cut(s)	529
XspI	CTAG	4 cut(s)	303, 312, 830, 1196
ZraI	GACGTC	1 cut(s)	247
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.