Rh3DG298300

Anaphase-promoting complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016973
Physical Location & Seq
Forward (+)
31287850 .. 31291183
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG298300.1

Sequence Viewer

Length: 921 bp
ATGTACAACGCAGAAAAGAGGGGCAAGAGACAGTTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGGCAAGTCTACTTTCATCGATACAATTTGGTCCTCAAGATGGATGGCTTTCGTCATTTTACTCATGCTTGATAAAAAAGTATGACAAAGAAAATGTTGTAGAAGTAAACTTTGGAGAACTTGAAAAAGAGAGATGTAACAGTAACACTTCCGATCTTTCGTTCATTCACACTCTGAAAACCAACACTGACCTTCTGGTGTGCAAAGCAGAATACTACCATCAGTGTGGTGAATATCAAAAATGCTTTGAACTTACCTCTTTCCTACTTGAAAAAGACACTTTCCATCTTAAAAGTACATTAGTGCATCTAGCAGCTGCGATGGAACTTGGGAATTCAAATGAGCTCTATCTTATGGCATGCAATTTAGTGAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTTCTGTTGGCTGTTACTACTATTGTATAAAAAAGTATGATCAGTCACGCCGTTATTTCAGTAAGGCTACCAATGTCGATGGAAACTTTCCACCTGCATGGATAGGATATGGGAATGCTTATTCTGCTCAAGATGAGGGAGATCAAACTATGTCAATTTATCGCACTGCTGCTCGTTTGTTTCCAGGGTGTCATTTACCAACTTTGTACATTGGAATGGAGTACATGCGAACCCACAGCTACAAACTTGCTGAGCAGGTGACTTAG

Protein Analysis

306

Amino Acids

35.24

Weight (kDa)

8.4

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 2 - 73 2.7e-07 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 757, 901
AasI GACNNNNNNGTC 1 cut(s) 258
Acc36I ACCTGC 2 cut(s) 757, 901
AccI GTMKAC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 586
AfaI GTAC 4 cut(s) 5, 550, 863, 878
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 6 cut(s) 152, 221, 377, 503, 524, 591
AjnI CCWGG 1 cut(s) 838
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
AluBI AGCT 3 cut(s) 569, 598, 894
AluI AGCT 3 cut(s) 569, 598, 894
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 3 cut(s) 566, 569, 824
ApoI RAATTY 1 cut(s) 586
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 494
AvaII GGWCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 600
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 3 cut(s) 556, 578, 811
BccI CCATC 6 cut(s) 287, 291, 480, 546, 568, 728
BceAI ACGGC 2 cut(s) 246, 690
BciT130I CCWGG 1 cut(s) 840
BclI TGATCA 2 cut(s) 39, 694
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 2 cut(s) 234, 563
BfuAI ACCTGC 2 cut(s) 757, 901
BglII AGATCT 1 cut(s) 131
BisI GCNGC 3 cut(s) 567, 570, 825
BlpI GCTNAGC 1 cut(s) 906
BlsI GCNGC 3 cut(s) 568, 571, 826
Bme1390I CCNGG 1 cut(s) 840
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 840
BmsI GCATC 1 cut(s) 568
Bpu1102I GCTNAGC 1 cut(s) 906
BpuEI CTTGAG 2 cut(s) 273, 768
Bsa29I ATCGAT 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 54, 839
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 840
BseCI ATCGAT 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 54, 839
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 897
BseXI GCAGC 3 cut(s) 556, 578, 811
BshFI GGCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 600
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 775
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 600
Bsp1407I TGTACA 2 cut(s) 3, 861
Bsp143I GATC 5 cut(s) 39, 131, 406, 694, 796
Bsp1720I GCTNAGC 1 cut(s) 906
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 898
BspDI ATCGAT 1 cut(s) 272
BspHI TCATGA 1 cut(s) 36
BspMI ACCTGC 2 cut(s) 757, 901
BsrGI TGTACA 2 cut(s) 3, 861
BssECI CCNNGG 2 cut(s) 54, 839
BssMI GATC 5 cut(s) 39, 131, 406, 694, 796
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 3 cut(s) 33, 95, 395
BstAUI TGTACA 2 cut(s) 3, 861
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 2 cut(s) 906, 918
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 5 cut(s) 42, 134, 409, 697, 799
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 5 cut(s) 39, 131, 406, 694, 796
BstMWI GCNNNNNNNGC 1 cut(s) 779
BstNI CCWGG 1 cut(s) 840
BstNSI RCATGY 2 cut(s) 615, 883
BstSCI CCNGG 1 cut(s) 838
BstV1I GCAGC 3 cut(s) 556, 578, 811
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 3 cut(s) 134, 479, 753
BstYI RGATCY 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 272
BsuRI GGCC 1 cut(s) 46
BsuTUI ATCGAT 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 587
BtsCI GGATG 1 cut(s) 302
BtsI GCAGTG 1 cut(s) 819
BtsIMutI CAGTG 3 cut(s) 438, 482, 819
BveI ACCTGC 2 cut(s) 757, 901
Cac8I GCNNGC 1 cut(s) 613
CciI TCATGA 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 284
ClaI ATCGAT 1 cut(s) 272
Csp6I GTAC 4 cut(s) 4, 549, 862, 877
CviAII CATG 6 cut(s) 37, 318, 612, 651, 753, 880
CviQI GTAC 4 cut(s) 4, 549, 862, 877
DdeI CTNAG 2 cut(s) 906, 918
DpnI GATC 5 cut(s) 41, 133, 408, 696, 798
DpnII GATC 5 cut(s) 39, 131, 406, 694, 796
DrdI GACNNNNNNGTC 1 cut(s) 258
DseDI GACNNNNNNGTC 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 598
Eco130I CCWWGG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 598
EcoICRI GAGCTC 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 6 cut(s) 40, 321, 615, 654, 756, 883
FatI CATG 6 cut(s) 36, 317, 611, 650, 752, 879
FbaI TGATCA 2 cut(s) 39, 694
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 567, 570, 825
FokI GGATG 1 cut(s) 309
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 3 cut(s) 567, 570, 825
FspBI CTAG 2 cut(s) 234, 563
GluI GCNGC 3 cut(s) 567, 570, 825
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 6 cut(s) 40, 321, 615, 654, 756, 883
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 263, 361
Hpy188I TCNGA 2 cut(s) 406, 429
Hpy188III TCNNGA 5 cut(s) 37, 135, 249, 290, 785
Hpy8I GTNNAC 2 cut(s) 263, 361
HpyAV CCTTC 4 cut(s) 57, 215, 455, 619
HpyCH4III ACNGT 3 cut(s) 33, 95, 395
HpyCH4V TGCA 5 cut(s) 85, 456, 559, 615, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 779
HpyF3I CTNAG 2 cut(s) 906, 918
Hsp92II CATG 6 cut(s) 40, 321, 615, 654, 756, 883
Ksp22I TGATCA 2 cut(s) 39, 694
Kzo9I GATC 5 cut(s) 39, 131, 406, 694, 796
LpnPI CCDG 9 cut(s) 28, 120, 211, 239, 434, 762, 825, 852, 896
Lsp1109I GCAGC 3 cut(s) 556, 578, 811
LweI GCATC 1 cut(s) 568
MaeI CTAG 2 cut(s) 234, 563
MaeIII GTNAC 5 cut(s) 389, 395, 668, 699, 913
MalI GATC 5 cut(s) 41, 133, 408, 696, 798
MboI GATC 5 cut(s) 39, 131, 406, 694, 796
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 4 cut(s) 278, 586, 616, 810
MnlI CCTC 7 cut(s) 12, 156, 201, 297, 520, 645, 784
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 3 cut(s) 477, 751, 869
MspA1I CMGCKG 1 cut(s) 569
MspR9I CCNGG 1 cut(s) 840
Mva1269I GAATGC 1 cut(s) 775
MvaI CCWGG 1 cut(s) 840
MwoI GCNNNNNNNGC 1 cut(s) 779
NdeII GATC 5 cut(s) 39, 131, 406, 694, 796
NlaIII CATG 6 cut(s) 40, 321, 615, 654, 756, 883
NmuCI GTSAC 2 cut(s) 699, 913
NspI RCATGY 2 cut(s) 615, 883
PaeI GCATGC 1 cut(s) 615
PagI TCATGA 1 cut(s) 36
PaqCI CACCTGC 2 cut(s) 757, 901
PceI AGGCCT 1 cut(s) 46
PctI GAATGC 1 cut(s) 775
PkrI GCNGC 3 cut(s) 568, 571, 826
Psp124BI GAGCTC 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 4 cut(s) 5, 550, 863, 878
RsaNI GTAC 4 cut(s) 4, 549, 862, 877
RseI CAYNNNNRTG 3 cut(s) 477, 751, 869
SacI GAGCTC 1 cut(s) 600
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 3 cut(s) 567, 570, 825
Sau3AI GATC 5 cut(s) 39, 131, 406, 694, 796
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 840
SduI GDGCHC 1 cut(s) 600
SetI ASST 8 cut(s) 60, 447, 512, 571, 600, 751, 896, 915
SfaNI GCATC 1 cut(s) 568
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 3 cut(s) 477, 751, 869
SmlI CTYRAG 2 cut(s) 288, 783
SmoI CTYRAG 2 cut(s) 288, 783
SphI GCATGC 1 cut(s) 615
Sse9I AATT 4 cut(s) 278, 586, 616, 810
SseBI AGGCCT 1 cut(s) 46
SspMI CTAG 2 cut(s) 234, 563
SstI GAGCTC 1 cut(s) 600
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 838
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 3 cut(s) 33, 95, 395
TaqI TCGA 2 cut(s) 272, 732
TasI AATT 4 cut(s) 278, 586, 616, 810
TatI WGTACW 4 cut(s) 3, 548, 861, 876
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 3 cut(s) 445, 482, 826
TseFI GTSAC 2 cut(s) 699, 913
TseI GCWGC 3 cut(s) 566, 569, 824
Tsp45I GTSAC 2 cut(s) 699, 913
TspDTI ATGAA 3 cut(s) 25, 258, 406
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 3 cut(s) 445, 482, 826
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 586
XceI RCATGY 2 cut(s) 615, 883
XmiI GTMKAC 1 cut(s) 262
XspI CTAG 2 cut(s) 234, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.