Rorug01G0382100

Anaphase-promoting complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016973
Physical Location & Seq
Forward (+)
49441133 .. 49449214
8082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0382100.1

Sequence Viewer

Length: 1362 bp
ATGGAGCAAAGGAAGGGCCGGAGATTGATACTCTTCCCACTGCCCTTTCAAGGTCATATAAACCCCATGCTAGAGCTGGCCAACATTTTACACCTGAAAGGCTTCTCCATAACCATCATTCACACCAACTTCAACTCTCTCAACCCTTCAAGCCATCCACACTTCACCTTTCACTCAATTCCTGATGGCTTATCTGAAAGTGAGGCCTCCACAAAGGATATCATCTTCCTCGTTTCTGTTCTAAATGCTAAATGTGTCGAACCTTTCCGAGAATGCTTGGCTAGCTTGTTATCTGATGTTTCAGAGGAGCCTGTTGCTTGTTTGATATCAGACGCTATCTTTCACTTCGCTCAATCTGTTGCCGATAGCCTTAAGGTCCCGAGGGTTGTTTTAAGGACTGGGGGTGCTTCTTCATTTACTGTTTTTGCTGCATTTCCACTTCTGCGTGAAAAGGGCTACATCCCAATACAAGATTCTCGACTAGAAGAGCCAGTGGCAGAGTTCCCACATCTCAAAGTCAAAGACCTTCCTGTGCTCAAAGGGTGTGACTCAGAGGAATATTATCAACTAGTAGACGGCATGTCAAATGGAACCAAGTCCTCAAGGGGACTCATTTTTAATACGTTTGAATACCTTGAAGAGCATGCACTGGGAAAAATTCGACAAGAATTCCCCATTCCAATTTTCCCTATAGGACCATTTCACTACTGTTTCCCTGCAGCCTCTTCTTCACTTCCCTTGTCAACAGAAGACAAAAGCTGCATTTCATGGCTAAACAGTCAAGCACCCAAATCCGTTGTCTATGTTAGCTATGGGAGCATTGCAGCAATAAAGGAAGCTCAATTTTTGGAGATAGCTTGGGGACTAGCCAACAGCAAGCGGCCTTTCTTATGGGTGATTCGACCTGATTCAATCCACGGAGGTTCCCAATGGCTTGAACTATTACCTAATGAATTTCTAGAGAACTTGAACGGGAGGGGGCACATTGTGAAGTGGTCTCCCCAAAAAGAAGTGTTATCACATGCAGCCATTGGAGTCTTTTGGACTCACAGCGGCTGGAACTCTACACTGGAAAGCATTTGCGAGGGAGTTCCTATGATTTGTATGCCATGTTTCACTGATCAATTGGTGAACGCGAGATATGTAAGCAATGTCTGGAAGGTTGGTTTGCAGTTAGAGCCGGGGGCAGAGAGAGGTGAAATCGAAAGAACGATTAGAAAACTAATGGTGGAGAAAGAAGGGGAGGAGATCAGAGCCAGAAGCTTAAAGCTAATGGAGAAGGCGAATCTCTGCTTCAAACAAGATGGCTCTTCATACCAATCCTTGGACGGCTTGGTTAAACATATTCTATCACTAGAATAA

Protein Analysis

453

Amino Acids

50.7

Weight (kDa)

6.04

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 80 - 387 1.2e-29 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1324
AccI GTMKAC 1 cut(s) 573
AccII CGCG 1 cut(s) 1136
AciI CCGC 2 cut(s) 880, 1053
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 3 cut(s) 657, 668, 953
AdeI CACNNNGTG 1 cut(s) 988
AfiI CCNNNNNNNGG 2 cut(s) 50, 1324
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 9 cut(s) 50, 133, 150, 629, 638, 912, 938, 970, 1297
AhdI GACNNNNNGTC 1 cut(s) 580
AhlI ACTAGT 1 cut(s) 568
AjuI GAANNNNNNNTTGG 2 cut(s) 457, 489
AluBI AGCT 8 cut(s) 76, 285, 759, 810, 839, 857, 1263, 1270
AluI AGCT 8 cut(s) 76, 285, 759, 810, 839, 857, 1263, 1270
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 1 cut(s) 1002
AlwNI CAGNNNCTG 1 cut(s) 1056
Ama87I CYCGRG 1 cut(s) 379
AoxI GGCC 4 cut(s) 16, 78, 204, 881
ApeKI GCWGC 5 cut(s) 428, 719, 759, 824, 1025
ApoI RAATTY 3 cut(s) 657, 668, 953
ArsI GACNNNNNNTTYG 2 cut(s) 783, 815
Asp700I GAANNNNTTC 1 cut(s) 101
AspS9I GGNCC 3 cut(s) 16, 376, 695
AsuC2I CCSGG 1 cut(s) 1182
AsuHPI GGTGA 4 cut(s) 157, 907, 1141, 1208
AsuNHI GCTAGC 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 379
AvaII GGWCC 2 cut(s) 376, 695
BaeGI GKGCMC 1 cut(s) 984
BalI TGGCCA 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 5 cut(s) 415, 731, 746, 836, 1037
BccI CCATC 4 cut(s) 122, 162, 179, 1298
BceAI ACGGC 2 cut(s) 592, 1345
BclI TGATCA 1 cut(s) 1120
BcnI CCSGG 1 cut(s) 1182
BcoDI GTCTC 1 cut(s) 1002
BcuI ACTAGT 1 cut(s) 568
BfaI CTAG 7 cut(s) 71, 282, 482, 569, 866, 959, 1355
BfmI CTRYAG 2 cut(s) 690, 717
BfrI CTTAAG 1 cut(s) 371
BisI GCNGC 7 cut(s) 429, 720, 760, 825, 881, 1026, 1054
BlsI GCNGC 7 cut(s) 430, 721, 761, 826, 882, 1027, 1055
Bme1390I CCNGG 1 cut(s) 1182
Bme18I GGWCC 2 cut(s) 376, 695
BmeRI GACNNNNNGTC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 379
BmgT120I GGNCC 3 cut(s) 16, 376, 695
BmiI GGNNCC 4 cut(s) 309, 378, 592, 925
BmrFI CCNGG 1 cut(s) 1182
BmrI ACTGGG 2 cut(s) 408, 659
BmtI GCTAGC 1 cut(s) 285
BmuI ACTGGG 2 cut(s) 408, 659
BpiI GAAGAC 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 586
BpuMI CCSGG 1 cut(s) 1182
BsaI GGTCTC 1 cut(s) 1002
BsaJI CCNNGG 4 cut(s) 380, 916, 1181, 1323
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 1324
Bse1I ACTGG 4 cut(s) 403, 491, 654, 1074
Bse3DI GCAATG 2 cut(s) 819, 1156
BseDI CCNNGG 4 cut(s) 380, 916, 1181, 1323
BseGI GGATG 2 cut(s) 154, 459
BseLI CCNNNNNNNGG 2 cut(s) 50, 1324
BseMI GCAATG 2 cut(s) 819, 1156
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 4 cut(s) 403, 491, 654, 1074
BseRI GAGGAG 2 cut(s) 320, 1259
BseSI GKGCMC 1 cut(s) 984
BseXI GCAGC 5 cut(s) 415, 731, 746, 836, 1037
Bsh1236I CGCG 1 cut(s) 1136
BshFI GGCC 4 cut(s) 18, 80, 206, 883
BsiHKAI GWGCWC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 2 cut(s) 19, 1181
BslFI GGGAC 3 cut(s) 362, 621, 876
BslI CCNNNNNNNGG 2 cut(s) 50, 1324
BsmAI GTCTC 1 cut(s) 1002
BsmFI GGGAC 3 cut(s) 362, 621, 876
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 4 cut(s) 18, 80, 206, 883
Bso31I GGTCTC 1 cut(s) 1002
BsoBI CYCGRG 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 537, 984
Bsp143I GATC 2 cut(s) 1120, 1248
BspACI CCGC 2 cut(s) 880, 1053
BspANI GGCC 4 cut(s) 18, 80, 206, 883
BspCNI CTCAG 1 cut(s) 563
BspFNI CGCG 1 cut(s) 1136
BspLI GGNNCC 4 cut(s) 309, 378, 592, 925
BspMAI CTGCAG 1 cut(s) 721
BspOI GCTAGC 1 cut(s) 285
BspQI GCTCTTC 3 cut(s) 480, 633, 1315
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 1002
BsrDI GCAATG 2 cut(s) 819, 1156
BsrI ACTGG 4 cut(s) 403, 491, 654, 1074
BssECI CCNNGG 4 cut(s) 380, 916, 1181, 1323
BssMI GATC 2 cut(s) 1120, 1248
BssT1I CCWWGG 1 cut(s) 1323
Bst4CI ACNGT 3 cut(s) 421, 710, 779
Bst6I CTCTTC 5 cut(s) 38, 480, 633, 730, 1315
BstAFI CTTAAG 1 cut(s) 371
BstC8I GCNNGC 4 cut(s) 78, 283, 645, 878
BstDEI CTNAG 1 cut(s) 550
BstDSI CCRYGG 1 cut(s) 916
BstF5I GGATG 2 cut(s) 154, 459
BstFNI CGCG 1 cut(s) 1136
BstKTI GATC 2 cut(s) 1123, 1251
BstMAI GTCTC 1 cut(s) 1002
BstMBI GATC 2 cut(s) 1120, 1248
BstMWI GCNNNNNNNGC 3 cut(s) 282, 816, 1177
BstNSI RCATGY 3 cut(s) 583, 647, 1025
BstSCI CCNGG 1 cut(s) 1180
BstSFI CTRYAG 2 cut(s) 690, 717
BstSLI GKGCMC 1 cut(s) 984
BstUI CGCG 1 cut(s) 1136
BstV1I GCAGC 5 cut(s) 415, 731, 746, 836, 1037
BstV2I GAAGAC 1 cut(s) 756
BsuRI GGCC 4 cut(s) 18, 80, 206, 883
BtgI CCRYGG 1 cut(s) 916
BtsCI GGATG 2 cut(s) 154, 459
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 5 cut(s) 38, 498, 647, 1067, 1116
Cac8I GCNNGC 4 cut(s) 78, 283, 645, 878
CaiI CAGNNNCTG 1 cut(s) 1056
Cfr13I GGNCC 3 cut(s) 16, 376, 695
CseI GACGC 1 cut(s) 341
CviAII CATG 6 cut(s) 67, 580, 644, 768, 1022, 1110
DdeI CTNAG 1 cut(s) 550
DpnI GATC 2 cut(s) 1122, 1250
DpnII GATC 2 cut(s) 1120, 1248
DraIII CACNNNGTG 1 cut(s) 988
DriI GACNNNNNGTC 1 cut(s) 580
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 5 cut(s) 38, 480, 633, 730, 1315
Eam1105I GACNNNNNGTC 1 cut(s) 580
EarI CTCTTC 5 cut(s) 38, 480, 633, 730, 1315
Eco130I CCWWGG 1 cut(s) 1323
Eco147I AGGCCT 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 1002
Eco32I GATATC 2 cut(s) 220, 327
Eco47I GGWCC 2 cut(s) 376, 695
Eco88I CYCGRG 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 668
EcoRV GATATC 2 cut(s) 220, 327
EcoT14I CCWWGG 1 cut(s) 1323
ErhI CCWWGG 1 cut(s) 1323
FaeI CATG 6 cut(s) 70, 583, 647, 771, 1025, 1113
FaqI GGGAC 3 cut(s) 362, 621, 876
FatI CATG 6 cut(s) 66, 579, 643, 767, 1021, 1109
FbaI TGATCA 1 cut(s) 1120
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 7 cut(s) 429, 720, 760, 825, 881, 1026, 1054
FokI GGATG 2 cut(s) 141, 446
Fsp4HI GCNGC 7 cut(s) 429, 720, 760, 825, 881, 1026, 1054
FspBI CTAG 7 cut(s) 71, 282, 482, 569, 866, 959, 1355
GluI GCNGC 7 cut(s) 429, 720, 760, 825, 881, 1026, 1054
HaeIII GGCC 4 cut(s) 18, 80, 206, 883
HapII CCGG 2 cut(s) 19, 1181
HgaI GACGC 1 cut(s) 341
Hin1II CATG 6 cut(s) 70, 583, 647, 771, 1025, 1113
HincII GTYRAC 1 cut(s) 744
HindII GTYRAC 1 cut(s) 744
HindIII AAGCTT 1 cut(s) 1261
HinfI GANTC 8 cut(s) 473, 548, 609, 898, 908, 1035, 1045, 1285
HpaII CCGG 2 cut(s) 19, 1181
HphI GGTGA 4 cut(s) 157, 907, 1141, 1208
Hpy166II GTNNAC 3 cut(s) 574, 744, 1132
Hpy188I TCNGA 7 cut(s) 196, 269, 295, 304, 331, 553, 1253
Hpy188III TCNNGA 5 cut(s) 182, 379, 477, 959, 1156
Hpy8I GTNNAC 3 cut(s) 574, 744, 1132
HpyAV CCTTC 6 cut(s) 7, 156, 536, 1153, 1232, 1273
HpyCH4III ACNGT 3 cut(s) 421, 710, 779
HpyCH4IV ACGT 1 cut(s) 623
HpyCH4V TGCA 7 cut(s) 431, 647, 719, 762, 824, 1025, 1171
HpyF10VI GCNNNNNNNGC 3 cut(s) 282, 816, 1177
HpyF3I CTNAG 1 cut(s) 550
HpySE526I ACGT 1 cut(s) 623
Hsp92II CATG 6 cut(s) 70, 583, 647, 771, 1025, 1113
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 2 cut(s) 1120, 1248
LguI GCTCTTC 3 cut(s) 480, 633, 1315
LmnI GCTCC 3 cut(s) 4, 307, 816
Lsp1109I GCAGC 5 cut(s) 415, 731, 746, 836, 1037
MaeI CTAG 7 cut(s) 71, 282, 482, 569, 866, 959, 1355
MaeII ACGT 1 cut(s) 623
MaeIII GTNAC 1 cut(s) 545
MalI GATC 2 cut(s) 1122, 1250
MboI GATC 2 cut(s) 1120, 1248
MboII GAAGA 9 cut(s) 25, 217, 402, 497, 650, 717, 720, 761, 1302
MfeI CAATTG 1 cut(s) 1124
MhlI GDGCHC 2 cut(s) 537, 984
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 7 cut(s) 177, 657, 668, 681, 842, 953, 1124
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 4 cut(s) 542, 603, 1039, 1044
Mox20I TGGCCA 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 101
MscI TGGCCA 1 cut(s) 80
MseI TTAA 5 cut(s) 372, 392, 618, 1265, 1338
Msp20I TGGCCA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 1053
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 2 cut(s) 19, 1181
MspR9I CCNGG 1 cut(s) 1182
MunI CAATTG 1 cut(s) 1124
Mva1269I GAATGC 1 cut(s) 278
MvnI CGCG 1 cut(s) 1136
MwoI GCNNNNNNNGC 3 cut(s) 282, 816, 1177
NciI CCSGG 1 cut(s) 1182
NdeII GATC 2 cut(s) 1120, 1248
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 6 cut(s) 70, 583, 647, 771, 1025, 1113
NlaIV GGNNCC 4 cut(s) 309, 378, 592, 925
NmuCI GTSAC 1 cut(s) 545
NspI RCATGY 3 cut(s) 583, 647, 1025
PaeI GCATGC 1 cut(s) 647
PceI AGGCCT 1 cut(s) 206
PciSI GCTCTTC 3 cut(s) 480, 633, 1315
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 4 cut(s) 473, 898, 908, 1285
PflMI CCANNNNNTGG 1 cut(s) 1324
PkrI GCNGC 7 cut(s) 430, 721, 761, 826, 882, 1027, 1055
PleI GAGTC 4 cut(s) 542, 603, 1039, 1043
PpsI GAGTC 4 cut(s) 542, 603, 1039, 1043
PpuMI RGGWCCY 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 376
PspN4I GGNNCC 4 cut(s) 309, 378, 592, 925
PspPI GGNCC 3 cut(s) 16, 376, 695
PspPPI RGGWCCY 1 cut(s) 376
PstI CTGCAG 1 cut(s) 721
PstNI CAGNNNCTG 1 cut(s) 1056
SapI GCTCTTC 3 cut(s) 480, 633, 1315
SaqAI TTAA 5 cut(s) 372, 392, 618, 1265, 1338
SatI GCNGC 7 cut(s) 429, 720, 760, 825, 881, 1026, 1054
Sau3AI GATC 2 cut(s) 1120, 1248
Sau96I GGNCC 3 cut(s) 16, 376, 695
SchI GAGTC 4 cut(s) 542, 603, 1039, 1044
ScrFI CCNGG 1 cut(s) 1182
SduI GDGCHC 2 cut(s) 537, 984
SfcI CTRYAG 2 cut(s) 690, 717
SinI GGWCC 2 cut(s) 376, 695
SmlI CTYRAG 2 cut(s) 371, 601
SmoI CTYRAG 2 cut(s) 371, 601
SpeI ACTAGT 1 cut(s) 568
SphI GCATGC 1 cut(s) 647
Sse9I AATT 7 cut(s) 177, 657, 668, 681, 842, 953, 1124
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 2 cut(s) 880, 1053
SspI AATATT 1 cut(s) 560
SspMI CTAG 7 cut(s) 71, 282, 482, 569, 866, 959, 1355
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 1180
StyI CCWWGG 1 cut(s) 1323
TaaI ACNGT 3 cut(s) 421, 710, 779
TaiI ACGT 1 cut(s) 626
TaqI TCGA 5 cut(s) 258, 478, 661, 901, 1203
TasI AATT 7 cut(s) 177, 657, 668, 681, 842, 953, 1124
TauI GCSGC 2 cut(s) 883, 1056
TfiI GAWTC 4 cut(s) 473, 898, 908, 1285
Tru1I TTAA 5 cut(s) 372, 392, 618, 1265, 1338
Tru9I TTAA 5 cut(s) 372, 392, 618, 1265, 1338
TscAI CASTG 5 cut(s) 45, 498, 654, 1074, 1123
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 5 cut(s) 428, 719, 759, 824, 1025
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 4 cut(s) 402, 756, 966, 1302
TspGWI ACGGA 2 cut(s) 784, 933
TspRI CASTG 5 cut(s) 45, 498, 654, 1074, 1123
Van91I CCANNNNNTGG 1 cut(s) 1324
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 376, 695
XapI RAATTY 3 cut(s) 657, 668, 953
XbaI TCTAGA 1 cut(s) 958
XceI RCATGY 3 cut(s) 583, 647, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 7 cut(s) 71, 282, 482, 569, 866, 959, 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.