Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0016973

Physical Location & Seq

Genomic Coordinates Forward (+)

30345803 .. 30357649

Gene Structure 11847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G024590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCACCAGGTTACCGCCAGGCAGGTCCTAGTGATAATTCTGGCCACTTATCATCAGTGGAGGGACTTCCGCCAGCGGCGATTCCCGAGGCAACACCACACTTTGACAACGACCGCAACGCGGCGTTACTGGCGGAAGCAATGCTTCGAACCAGTGTATGATATTCTTGAGGATAAGGTAACACAAATTTGTTGTTGTGTGTTAACACAAACTCTATCACACAACGGTACAAATCTGTTTCCGTTGTGTGAATGTAATCTACTTTCATCGATACAATTTGGTCCTCAAGATGGATGGCTTTCGTCATTTTACTCATGCTTGATAAAAAAGCATGACAAAGAAAATGTTGTAGAAGCAAACTTTGGAGAACTTGAAAAAGAGAGATGTAACAGTAACACTTCCGATCTTTCGTTCATTCACACTCTGAAAACCAACACTGACCTTCTGGTGTGCAAAGCAGAATACTACCATCAGTGTGGTGAATATCAAAAATGCTTTGAACTTACCTCTTTCCTACTTGAAAAAGACACTTTCCATCTCAAAAGTACATTAGTGCATCTAGCAGCTGCGATGGAACTTGGGAATTCAAATGAGCTCTATCTTATGGCATGCAATTTAGTGAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTTCTGTTGGCTGTTACTACTATTGTATAAAAAAGTATGATCAGTCACGCCGTTATTTCAGTAAGGCTACCAATGTCGATGGAAACTTTCCACCTGCATGGATAGGATATGCGAATGCTTATTCTGCTCAAGATGAGGGAGATCAAGCTATGTCAATTTATCGCACTGCAGCTCGTTTGTTTCCAGGGTGTCATTTACCAACTTTGTACATTGGAATGGAGTACATGCGAACCCACAGCTACAAACTTGCTGAGCAGATTGTTCATGATCCACTAGTTTATTTTATAACCGTCGCAAATAGTTTAGCCATTGCGACGGCAGCAGTTTGCCGTCGCAAATACTTTTTGCAACGGAAATTTACCGTCGCAAATGGATTTTGTTCCTTCCTTTTCCTTTTCCTTTTCCTTTTTCTCTCTTTCTCACACAATTTGAGGATCTTGCCTTGTAGGGAAAACATTTGTGACATTGTATCTTTAACTATAATCAGCTCTTCACTCTCCGACCGCCAGCACCAGTCCCCCAAGATAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032875 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_2 TPR_3 TPR_7 TPR_8

Protein Analysis

394

Amino Acids

45.68

Weight (kDa)

8.52

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337671 RchiOBHm_Chr3g0469831
rosa_rugosa	Rorug01G0382100 Rorug06G0145400
rosa_samantha	Rh1AG081800 Rh3AG153900 Rh3BG178000 Rh3CG168700 Rh3DG298300 Rh4AG193800 Rh5DG475100 Rh7BG197900
rosa_wichuraiana	Rw2G033380 Rw7G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	938
AarI	CACCTGC	1 cut(s)	754
Acc36I	ACCTGC	2 cut(s)	13, 754
AccII	CGCG	1 cut(s)	121
AciI	CCGC	7 cut(s)	15, 70, 76, 114, 121, 133, 1156
AclWI	GGATC	2 cut(s)	914, 1094
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	3 cut(s)	186, 583, 1007
AfaI	GTAC	4 cut(s)	229, 547, 860, 875
AfiI	CCNNNNNNNGG	2 cut(s)	120, 290
AgsI	TTSAA	4 cut(s)	374, 500, 521, 588
AhlI	ACTAGT	1 cut(s)	925
AjnI	CCWGG	3 cut(s)	6, 17, 835
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	6 cut(s)	566, 595, 800, 824, 891, 1140
AluI	AGCT	6 cut(s)	566, 595, 800, 824, 891, 1140
Alw21I	GWGCWC	1 cut(s)	597
AlwI	GGATC	2 cut(s)	914, 1094
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	4 cut(s)	563, 566, 821, 971
ApoI	RAATTY	3 cut(s)	186, 583, 1007
AspS9I	GGNCC	2 cut(s)	25, 281
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	2 cut(s)	25, 281
BalI	TGGCCA	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	4 cut(s)	553, 575, 833, 983
BccI	CCATC	6 cut(s)	284, 288, 477, 543, 565, 725
BceAI	ACGGC	3 cut(s)	687, 966, 984
BciT130I	CCWGG	3 cut(s)	8, 19, 837
BclI	TGATCA	1 cut(s)	691
BcuI	ACTAGT	1 cut(s)	925
BfaI	CTAG	3 cut(s)	29, 560, 926
BfmI	CTRYAG	1 cut(s)	819
BfuAI	ACCTGC	2 cut(s)	13, 754
BisI	GCNGC	6 cut(s)	77, 122, 564, 567, 822, 972
BlpI	GCTNAGC	1 cut(s)	903
BlsI	GCNGC	6 cut(s)	78, 123, 565, 568, 823, 973
Bme1390I	CCNGG	3 cut(s)	8, 19, 837
Bme18I	GGWCC	2 cut(s)	25, 281
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	25, 281
BmrFI	CCNGG	3 cut(s)	8, 19, 837
BmsI	GCATC	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	903
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	3 cut(s)	188, 270, 765
Bsa29I	ATCGAT	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	86, 836
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 290
Bse1I	ACTGG	3 cut(s)	134, 152, 1165
Bse3DI	GCAATG	2 cut(s)	146, 960
BseBI	CCWGG	3 cut(s)	8, 19, 837
BseCI	ATCGAT	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	86, 836
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	120, 290
BseMI	GCAATG	2 cut(s)	146, 960
BseMII	CTCAG	1 cut(s)	894
BseNI	ACTGG	3 cut(s)	134, 152, 1165
BseXI	GCAGC	4 cut(s)	553, 575, 833, 983
Bsh1236I	CGCG	1 cut(s)	121
Bsh1285I	CGRYCG	2 cut(s)	114, 1156
BshFI	GGCC	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	269
BsiEI	CGRYCG	2 cut(s)	114, 1156
BsiHKAI	GWGCWC	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	77, 1153
BslI	CCNNNNNNNGG	2 cut(s)	120, 290
BsmFI	GGGAC	2 cut(s)	77, 1153
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp1407I	TGTACA	1 cut(s)	858
Bsp143I	GATC	5 cut(s)	403, 691, 793, 919, 1086
Bsp1720I	GCTNAGC	1 cut(s)	903
BspACI	CCGC	7 cut(s)	15, 70, 76, 114, 121, 133, 1156
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	895
BspDI	ATCGAT	1 cut(s)	269
BspFNI	CGCG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	916
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	2 cut(s)	13, 754
BspPI	GGATC	2 cut(s)	914, 1094
BspQI	GCTCTTC	1 cut(s)	1147
BspT104I	TTCGAA	1 cut(s)	147
BsrDI	GCAATG	2 cut(s)	146, 960
BsrGI	TGTACA	1 cut(s)	858
BsrI	ACTGG	3 cut(s)	134, 152, 1165
BssECI	CCNNGG	2 cut(s)	86, 836
BssMI	GATC	5 cut(s)	403, 691, 793, 919, 1086
Bst2UI	CCWGG	3 cut(s)	8, 19, 837
Bst4CI	ACNGT	4 cut(s)	227, 392, 943, 1015
Bst6I	CTCTTC	1 cut(s)	1147
BstAUI	TGTACA	1 cut(s)	858
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	74, 610, 1160
BstDEI	CTNAG	1 cut(s)	903
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	121
BstKTI	GATC	5 cut(s)	406, 694, 796, 922, 1089
BstMBI	GATC	5 cut(s)	403, 691, 793, 919, 1086
BstMCI	CGRYCG	2 cut(s)	114, 1156
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 776, 971
BstNI	CCWGG	3 cut(s)	8, 19, 837
BstNSI	RCATGY	2 cut(s)	612, 880
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	6, 17, 835
BstSFI	CTRYAG	1 cut(s)	819
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	4 cut(s)	553, 575, 833, 983
BstX2I	RGATCY	1 cut(s)	1086
BstXI	CCANNNNNNTGG	2 cut(s)	476, 750
BstYI	RGATCY	1 cut(s)	1086
Bsu15I	ATCGAT	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	44
BsuTUI	ATCGAT	1 cut(s)	269
BtgZI	GCGATG	1 cut(s)	584
BtsCI	GGATG	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	5 cut(s)	62, 159, 435, 479, 816
BveI	ACCTGC	2 cut(s)	13, 754
Cac8I	GCNNGC	3 cut(s)	74, 610, 1160
CciI	TCATGA	1 cut(s)	916
Cfr13I	GGNCC	2 cut(s)	25, 281
ClaI	ATCGAT	1 cut(s)	269
CsiI	ACCWGGT	1 cut(s)	6
Csp6I	GTAC	4 cut(s)	228, 546, 859, 874
CviAII	CATG	7 cut(s)	315, 332, 609, 648, 750, 877, 917
CviQI	GTAC	4 cut(s)	228, 546, 859, 874
DdeI	CTNAG	1 cut(s)	903
DpnI	GATC	5 cut(s)	405, 693, 795, 921, 1088
DpnII	GATC	5 cut(s)	403, 691, 793, 919, 1086
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	1147
EarI	CTCTTC	1 cut(s)	1147
EciI	GGCGGA	2 cut(s)	59, 148
Ecl136II	GAGCTC	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	25, 281
Eco53kI	GAGCTC	1 cut(s)	595
Eco88I	CYCGRG	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	595
EcoO109I	RGGNCCY	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	3 cut(s)	6, 17, 835
EcoT38I	GRGCYC	1 cut(s)	597
FaeI	CATG	7 cut(s)	318, 335, 612, 651, 753, 880, 920
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	2 cut(s)	77, 1153
FatI	CATG	7 cut(s)	314, 331, 608, 647, 749, 876, 916
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	6 cut(s)	77, 122, 564, 567, 822, 972
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	6 cut(s)	77, 122, 564, 567, 822, 972
FspBI	CTAG	3 cut(s)	29, 560, 926
GluI	GCNGC	6 cut(s)	77, 122, 564, 567, 822, 972
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	7 cut(s)	318, 335, 612, 651, 753, 880, 920
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	1 cut(s)	81
HpaI	GTTAAC	1 cut(s)	204
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	3 cut(s)	403, 426, 1153
Hpy188III	TCNNGA	5 cut(s)	85, 167, 287, 782, 917
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	4 cut(s)	947, 970, 987, 1019
HpyAV	CCTTC	3 cut(s)	452, 616, 1045
HpyCH4III	ACNGT	4 cut(s)	227, 392, 943, 1015
HpyCH4V	TGCA	7 cut(s)	4, 453, 556, 612, 749, 821, 1000
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 776, 971
HpyF3I	CTNAG	1 cut(s)	903
Hsp92II	CATG	7 cut(s)	318, 335, 612, 651, 753, 880, 920
Ksp22I	TGATCA	1 cut(s)	691
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	5 cut(s)	403, 691, 793, 919, 1086
LguI	GCTCTTC	1 cut(s)	1147
Lsp1109I	GCAGC	4 cut(s)	553, 575, 833, 983
LweI	GCATC	1 cut(s)	565
MabI	ACCWGGT	1 cut(s)	6
MaeI	CTAG	3 cut(s)	29, 560, 926
MaeIII	GTNAC	8 cut(s)	10, 125, 178, 386, 392, 665, 696, 1112
MalI	GATC	5 cut(s)	405, 693, 795, 921, 1088
MboI	GATC	5 cut(s)	403, 691, 793, 919, 1086
MboII	GAAGA	1 cut(s)	1134
MflI	RGATCY	1 cut(s)	1086
MhlI	GDGCHC	1 cut(s)	597
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	8 cut(s)	36, 186, 275, 583, 613, 807, 1007, 1078
MluNI	TGGCCA	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	1176
MnlI	CCTC	8 cut(s)	54, 81, 163, 294, 517, 642, 781, 1077
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	2 cut(s)	203, 1127
MslI	CAYNNNNRTG	3 cut(s)	474, 748, 866
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	2 cut(s)	76, 566
MspR9I	CCNGG	3 cut(s)	8, 19, 837
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	3 cut(s)	8, 19, 837
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	3 cut(s)	130, 776, 971
NdeII	GATC	5 cut(s)	403, 691, 793, 919, 1086
NlaIII	CATG	7 cut(s)	318, 335, 612, 651, 753, 880, 920
NmuCI	GTSAC	2 cut(s)	696, 1112
NspI	RCATGY	2 cut(s)	612, 880
NspV	TTCGAA	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	612
PagI	TCATGA	1 cut(s)	916
PaqCI	CACCTGC	1 cut(s)	754
PciSI	GCTCTTC	1 cut(s)	1147
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	6 cut(s)	78, 123, 565, 568, 823, 973
PpuMI	RGGWCCY	1 cut(s)	25
PsiI	TTATAA	1 cut(s)	938
Psp124BI	GAGCTC	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	25
Psp6I	CCWGG	3 cut(s)	6, 17, 835
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	3 cut(s)	6, 17, 835
PspPI	GGNCC	2 cut(s)	25, 281
PspPPI	RGGWCCY	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	1086
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	4 cut(s)	229, 547, 860, 875
RsaNI	GTAC	4 cut(s)	228, 546, 859, 874
RseI	CAYNNNNRTG	3 cut(s)	474, 748, 866
SacI	GAGCTC	1 cut(s)	597
SapI	GCTCTTC	1 cut(s)	1147
SaqAI	TTAA	2 cut(s)	203, 1127
SatI	GCNGC	6 cut(s)	77, 122, 564, 567, 822, 972
Sau3AI	GATC	5 cut(s)	403, 691, 793, 919, 1086
Sau96I	GGNCC	2 cut(s)	25, 281
ScrFI	CCNGG	3 cut(s)	8, 19, 837
SduI	GDGCHC	1 cut(s)	597
SexAI	ACCWGGT	1 cut(s)	6
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	819
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	2 cut(s)	25, 281
SmiMI	CAYNNNNRTG	3 cut(s)	474, 748, 866
SmlI	CTYRAG	3 cut(s)	167, 285, 780
SmoI	CTYRAG	3 cut(s)	167, 285, 780
SpeI	ACTAGT	1 cut(s)	925
SphI	GCATGC	1 cut(s)	612
Sse9I	AATT	8 cut(s)	36, 186, 275, 583, 613, 807, 1007, 1078
SsiI	CCGC	7 cut(s)	15, 70, 76, 114, 121, 133, 1156
SspMI	CTAG	3 cut(s)	29, 560, 926
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	3 cut(s)	6, 17, 835
TaaI	ACNGT	4 cut(s)	227, 392, 943, 1015
TaqI	TCGA	3 cut(s)	147, 269, 729
TasI	AATT	8 cut(s)	36, 186, 275, 583, 613, 807, 1007, 1078
TatI	WGTACW	3 cut(s)	545, 858, 873
TauI	GCSGC	2 cut(s)	79, 124
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	203, 1127
Tru9I	TTAA	2 cut(s)	203, 1127
TscAI	CASTG	5 cut(s)	62, 159, 442, 479, 823
TseFI	GTSAC	2 cut(s)	696, 1112
TseI	GCWGC	4 cut(s)	563, 566, 821, 971
Tsp45I	GTSAC	2 cut(s)	696, 1112
TspDTI	ATGAA	3 cut(s)	255, 403, 905
TspGWI	ACGGA	2 cut(s)	231, 1018
TspRI	CASTG	5 cut(s)	62, 159, 442, 479, 823
VpaK11BI	GGWCC	2 cut(s)	25, 281
XapI	RAATTY	3 cut(s)	186, 583, 1007
XceI	RCATGY	2 cut(s)	612, 880
XspI	CTAG	3 cut(s)	29, 560, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.