Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016973

Physical Location & Seq

Genomic Coordinates Reverse (-)

16240123 .. 16261272

Gene Structure 21150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTGAGAGTCAGCGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCAGAGAAGAGGGGCAAGAGACAGTTCATTGATCAGGCCTTCATCCAAGGTTATATTGGAGAGTTTGAGGCTTTGTCATGGTTTTCTGTTGGCTGTTACTACTATTGTATAAAAAAGTATGATCAGTCACGCCGTTATTTCAGTAAGGCTACCAAAGTCGATGGAAACTTTCCACCTGCATGGATAGGATATGGGAATGCTTATTCTGCTCAAGATGAGGGAGATCAAGCTATGTCAATTTATCGCACTTCTGCTCGTTTGTTTCCAGGGTGTCATTTACCAACTTTGTACATTGGAATGGAGTACATGCGAACCCACAGCTACAAACTTGCTGAGCAGGTTCAAAAGGATGATCTGCTTAATTTTTCGTGTCAGATCAGGAGAACGCCAATTGAGGAACTTTGCCTTCAGAACCAGCGCGCATTGCCGAACTTCGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032875 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_10 TPR_16 TPR_2 TPR_3 TPR_7 TPR_8

Protein Analysis

163

Amino Acids

18.98

Weight (kDa)

8.54

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337671 RchiOBHm_Chr3g0469831
rosa_rugosa	Rorug01G0382100 Rorug06G0145400
rosa_samantha	Rh1AG081800 Rh3AG153900 Rh3BG178000 Rh3CG168700 Rh3DG298300 Rh4AG193800 Rh5DG475100 Rh7BG197900
rosa_wichuraiana	Rw2G033380 Rw7G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	2 cut(s)	232, 376
AccII	CGCG	1 cut(s)	468
AcuI	CTGAAG	2 cut(s)	53, 440
AfaI	GTAC	3 cut(s)	44, 338, 353
AgsI	TTSAA	2 cut(s)	22, 392
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	2 cut(s)	278, 369
AluI	AGCT	2 cut(s)	278, 369
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	468, 470
AsuHPI	GGTGA	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	315
BclI	TGATCA	2 cut(s)	79, 169
BcoDI	GTCTC	1 cut(s)	61
BfuAI	ACCTGC	2 cut(s)	232, 376
BlpI	GCTNAGC	1 cut(s)	381
Bme1390I	CCNGG	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	16
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	94, 314
Bse3DI	GCAATG	1 cut(s)	470
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	94, 314
BseGI	GGATG	2 cut(s)	90, 403
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	372
BsePI	GCGCGC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	86
Bsp1407I	TGTACA	2 cut(s)	42, 336
Bsp143I	GATC	5 cut(s)	79, 169, 271, 400, 423
Bsp1720I	GCTNAGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	468
BspMI	ACCTGC	2 cut(s)	232, 376
BspQI	GCTCTTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	470
BsrGI	TGTACA	2 cut(s)	42, 336
BssECI	CCNNGG	2 cut(s)	94, 314
BssHII	GCGCGC	1 cut(s)	466
BssMI	GATC	5 cut(s)	79, 169, 271, 400, 423
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	29, 50
BstAUI	TGTACA	2 cut(s)	42, 336
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	90, 403
BstFNI	CGCG	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	468, 470
BstKTI	GATC	5 cut(s)	82, 172, 274, 403, 426
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	79, 169, 271, 400, 423
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 472
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	2 cut(s)	43, 358
BstSCI	CCNGG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	90, 403
BveI	ACCTGC	2 cut(s)	232, 376
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	2 cut(s)	468, 470
Csp6I	GTAC	3 cut(s)	43, 337, 352
CviAII	CATG	4 cut(s)	40, 126, 228, 355
CviJI	RGCY	6 cut(s)	86, 119, 141, 197, 278, 369
CviKI_1	RGCY	6 cut(s)	86, 119, 141, 197, 278, 369
CviQI	GTAC	3 cut(s)	43, 337, 352
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	5 cut(s)	81, 171, 273, 402, 425
DpnII	GATC	5 cut(s)	79, 169, 271, 400, 423
Eam1104I	CTCTTC	2 cut(s)	29, 50
EarI	CTCTTC	2 cut(s)	29, 50
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	53, 440
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	4 cut(s)	43, 129, 231, 358
FaiI	YATR	9 cut(s)	41, 102, 127, 158, 168, 229, 240, 281, 356
FatI	CATG	4 cut(s)	39, 125, 227, 354
FbaI	TGATCA	2 cut(s)	79, 169
FokI	GGATG	2 cut(s)	77, 410
GlaI	GCGC	2 cut(s)	467, 469
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	2 cut(s)	468, 470
Hin1II	CATG	4 cut(s)	43, 129, 231, 358
Hin6I	GCGC	2 cut(s)	466, 468
HinP1I	GCGC	2 cut(s)	466, 468
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	33, 423, 459
Hpy188III	TCNNGA	2 cut(s)	260, 427
HpyAV	CCTTC	2 cut(s)	97, 464
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 472
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	4 cut(s)	43, 129, 231, 358
HspAI	GCGC	2 cut(s)	466, 468
Ksp22I	TGATCA	2 cut(s)	79, 169
Kzo9I	GATC	5 cut(s)	79, 169, 271, 400, 423
LguI	GCTCTTC	1 cut(s)	29
LpnPI	CCDG	7 cut(s)	68, 237, 300, 327, 371, 412, 476
LweI	GCATC	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	143, 174
MalI	GATC	5 cut(s)	81, 171, 273, 402, 425
MboI	GATC	5 cut(s)	79, 169, 271, 400, 423
MboII	GAAGA	2 cut(s)	46, 67
MfeI	CAATTG	1 cut(s)	438
MluCI	AATT	3 cut(s)	285, 409, 438
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	4 cut(s)	51, 109, 259, 436
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	2 cut(s)	226, 344
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	254, 472
NdeII	GATC	5 cut(s)	79, 169, 271, 400, 423
NlaIII	CATG	4 cut(s)	43, 129, 231, 358
NmuCI	GTSAC	1 cut(s)	174
NspI	RCATGY	2 cut(s)	43, 358
PaqCI	CACCTGC	1 cut(s)	232
PauI	GCGCGC	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	29
PctI	GAATGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PteI	GCGCGC	1 cut(s)	466
RsaI	GTAC	3 cut(s)	44, 338, 353
RsaNI	GTAC	3 cut(s)	43, 337, 352
RseI	CAYNNNNRTG	2 cut(s)	226, 344
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	408
Sau3AI	GATC	5 cut(s)	79, 169, 271, 400, 423
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	5 cut(s)	100, 226, 280, 371, 390
SfaNI	GCATC	1 cut(s)	16
SmiMI	CAYNNNNRTG	2 cut(s)	226, 344
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	285, 409, 438
SseBI	AGGCCT	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	285, 409, 438
TatI	WGTACW	3 cut(s)	42, 336, 351
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	64, 79
XceI	RCATGY	2 cut(s)	43, 358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.