Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016973

Physical Location & Seq

Genomic Coordinates Reverse (-)

14617901 .. 14624252

Gene Structure 6352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG168700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAATCCCGACCCGAACGCACCCTCGGCCGGGTCCTCCAAGGCCGACCTGAACCGAATCTGGCGCTCATTAGAGGCAAGTCTACTTTCATCGATACAATTTGGTCCTCAAGATGGATGGCTTTCGTCATTTTACTCATGCTTGATAAAAAAGTATGACAAAGAAAATGTTGTAGAAGCAAACTTTGGAGAACTTGAAAAAGAGAGATGTAACAGTAACACTTCCGATCTTTCGTTCATTCACACTCTGAAAACCAACACTGACCTTCTGGTGTGCAAAGCAGAATACTACCAGTGTGGTGAATATCAAAAAAGCTTTGAACTTACCTCTTTCCTACTTGAAAAAGACACTTTCCATCTCAAAAGTACATTAGTGCATCTAGCAGCTGCGATGGAACTTGGGAATTCAAATGAGCTCTATCTTATGGCATGCAATTTAGTGAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTTCTGTTGGCTGTTACTACTATTGTATAAAAAAGTATGATCAGTCACGCCGTTATTTCAGTAAGGCTACCAATGTCGATGGAAACTTTCCACCTGCATGGATAGGATATGGGAATGCTTATTCTGCTCAAGATGAGGGAGATCAAGCTATGTCAATTTATCGCACTGCTGCTCGTTTGTTTCCAGGGTGTCATTTACCAACTTTGTACATTGGAATGGAGTACATGCGAACCCACAACTACAAACTTGCTGAGCAGGGTACTCTTAATGATGGAAGAGTAATTGCCGTGAAGCAATTGTCTGCAGCATCCTGGCAAGGAAAAAATGAGTTTCTCCCTTGTTGTGTGTTCTTGCAGGCAACGTTCAGTGAAAGCAGCCTTGGCTTGTCTCAGGCATATGGGTTGTCTCGGCCTCCATTATTTCTTCATTCTCTTTCTGCCGGTGGTGGATCTAGGGTGGTGACGAAAGAATTTCTAGTTTTGATTCCTCGAGATGGCGACCTCTCTTCCTACTCTTTGGGCTATTTAGAGCTGGCTGGGTGGGGGTTTACTCTTGAGGTTGTTGTCTACGGCAGTGATGGTGTCTGGTCTGATGCGATAATGATTAGCTACAGCAATGCAAGCAACTGTCCAAGCCATGGCGGCGGCGTTTGCTGTTTGGATGAGCCAACTTGTTTTCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032875 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_2 TPR_3 TPR_7 TPR_8

Protein Analysis

385

Amino Acids

42.78

Weight (kDa)

5.45

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337671 RchiOBHm_Chr3g0469831
rosa_rugosa	Rorug01G0382100 Rorug06G0145400
rosa_samantha	Rh1AG081800 Rh3AG153900 Rh3BG178000 Rh3CG168700 Rh3DG298300 Rh4AG193800 Rh5DG475100 Rh7BG197900
rosa_wichuraiana	Rw2G033380 Rw7G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	1 cut(s)	574
AccB7I	CCANNNNNTGG	1 cut(s)	1109
AccI	GTMKAC	2 cut(s)	82, 1038
AciI	CCGC	2 cut(s)	1113, 1116
AclI	AACGTT	1 cut(s)	833
AclWI	GGATC	1 cut(s)	928
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	403, 941
AfaI	GTAC	4 cut(s)	367, 680, 695, 733
AfiI	CCNNNNNNNGG	5 cut(s)	29, 30, 113, 965, 1109
AgsI	TTSAA	5 cut(s)	197, 320, 341, 408, 1151
AjnI	CCWGG	2 cut(s)	655, 782
AjuI	GAANNNNNNNTTGG	4 cut(s)	168, 200, 834, 866
AluBI	AGCT	6 cut(s)	315, 386, 415, 620, 1003, 1080
AluI	AGCT	6 cut(s)	315, 386, 415, 620, 1003, 1080
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	864, 882
AlwI	GGATC	1 cut(s)	928
Ama87I	CYCGRG	1 cut(s)	960
AoxI	GGCC	3 cut(s)	27, 42, 881
ApeKI	GCWGC	5 cut(s)	383, 386, 641, 776, 846
ApoI	RAATTY	2 cut(s)	403, 941
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	33, 104
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	311, 943
AvaI	CYCGRG	1 cut(s)	960
AvaII	GGWCC	2 cut(s)	33, 104
BanII	GRGCYC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	5 cut(s)	373, 395, 628, 788, 858
BccI	CCATC	8 cut(s)	107, 111, 363, 385, 545, 737, 959, 1043
BceAI	ACGGC	3 cut(s)	507, 743, 1057
BciT130I	CCWGG	2 cut(s)	657, 784
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	864, 882
BfaI	CTAG	3 cut(s)	380, 924, 947
BfmI	CTRYAG	2 cut(s)	774, 1081
BfoI	RGCGCY	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	574
BglI	GCCNNNNNGGC	1 cut(s)	1113
BisI	GCNGC	7 cut(s)	384, 387, 642, 777, 847, 1114, 1117
BlpI	GCTNAGC	1 cut(s)	723
BlsI	GCNGC	7 cut(s)	385, 388, 643, 778, 848, 1115, 1118
Bme1390I	CCNGG	3 cut(s)	31, 657, 784
Bme18I	GGWCC	2 cut(s)	33, 104
BmeT110I	CYCGRG	1 cut(s)	960
BmgT120I	GGNCC	2 cut(s)	33, 104
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	3 cut(s)	31, 657, 784
BmsI	GCATC	3 cut(s)	385, 788, 1054
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	3 cut(s)	93, 585, 1046
BpuMI	CCSGG	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	92
BsaJI	CCNNGG	5 cut(s)	24, 39, 656, 850, 1108
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 30, 113, 965, 1109
Bse118I	RCCGGY	1 cut(s)	911
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	1093
BseBI	CCWGG	2 cut(s)	657, 784
BseCI	ATCGAT	1 cut(s)	92
BseDI	CCNNGG	5 cut(s)	24, 39, 656, 850, 1108
BseGI	GGATG	3 cut(s)	122, 779, 1138
BseLI	CCNNNNNNNGG	5 cut(s)	29, 30, 113, 965, 1109
BseMI	GCAATG	1 cut(s)	1093
BseMII	CTCAG	2 cut(s)	714, 875
BseNI	ACTGG	1 cut(s)	292
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	5 cut(s)	373, 395, 628, 788, 858
BseYI	CCCAGC	1 cut(s)	1007
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	3 cut(s)	29, 44, 883
BshVI	ATCGAT	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	960
BsiSI	CCGG	2 cut(s)	30, 912
BslI	CCNNNNNNNGG	5 cut(s)	29, 30, 113, 965, 1109
BsmAI	GTCTC	2 cut(s)	864, 882
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	3 cut(s)	29, 44, 883
BsoBI	CYCGRG	1 cut(s)	960
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	4 cut(s)	226, 511, 613, 920
Bsp1720I	GCTNAGC	1 cut(s)	723
Bsp19I	CCATGG	1 cut(s)	1108
BspACI	CCGC	2 cut(s)	1113, 1116
BspANI	GGCC	3 cut(s)	29, 44, 883
BspCNI	CTCAG	2 cut(s)	715, 874
BspDI	ATCGAT	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	778
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	1 cut(s)	928
BsrDI	GCAATG	1 cut(s)	1093
BsrFI	RCCGGY	1 cut(s)	911
BsrGI	TGTACA	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	911
BssECI	CCNNGG	5 cut(s)	24, 39, 656, 850, 1108
BssMI	GATC	4 cut(s)	226, 511, 613, 920
BssT1I	CCWWGG	3 cut(s)	39, 850, 1108
Bst2UI	CCWGG	2 cut(s)	657, 784
Bst4CI	ACNGT	2 cut(s)	215, 1100
Bst6I	CTCTTC	2 cut(s)	742, 982
BstAUI	TGTACA	1 cut(s)	678
BstC8I	GCNNGC	4 cut(s)	430, 828, 1005, 1093
BstDEI	CTNAG	2 cut(s)	723, 861
BstDSI	CCRYGG	1 cut(s)	1108
BstF5I	GGATG	3 cut(s)	122, 779, 1138
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	4 cut(s)	229, 514, 616, 923
BstMAI	GTCTC	2 cut(s)	864, 882
BstMBI	GATC	4 cut(s)	226, 511, 613, 920
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 596, 852, 1092, 1113, 1122
BstNI	CCWGG	2 cut(s)	657, 784
BstNSI	RCATGY	2 cut(s)	432, 700
BstSCI	CCNGG	3 cut(s)	29, 655, 782
BstSFI	CTRYAG	2 cut(s)	774, 1081
BstV1I	GCAGC	5 cut(s)	373, 395, 628, 788, 858
BstX2I	RGATCY	1 cut(s)	920
BstXI	CCANNNNNNTGG	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	920
BstZI	CGGCCG	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	29, 44, 883
BsuTUI	ATCGAT	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	1108
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	3 cut(s)	122, 779, 1138
BtsI	GCAGTG	2 cut(s)	636, 1051
BtsIMutI	CAGTG	5 cut(s)	258, 299, 636, 844, 1051
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	4 cut(s)	430, 828, 1005, 1093
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	911
Cfr13I	GGNCC	2 cut(s)	33, 104
ClaI	ATCGAT	1 cut(s)	92
Csp6I	GTAC	4 cut(s)	366, 679, 694, 732
CviAII	CATG	6 cut(s)	138, 429, 468, 570, 697, 1109
CviQI	GTAC	4 cut(s)	366, 679, 694, 732
DdeI	CTNAG	2 cut(s)	723, 861
DpnI	GATC	4 cut(s)	228, 513, 615, 922
DpnII	GATC	4 cut(s)	226, 511, 613, 920
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	742, 982
EarI	CTCTTC	2 cut(s)	742, 982
Ecl136II	GAGCTC	1 cut(s)	415
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	39, 850, 1108
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	33, 104
Eco52I	CGGCCG	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	960
EcoICRI	GAGCTC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	655, 782
EcoT14I	CCWWGG	3 cut(s)	39, 850, 1108
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	3 cut(s)	39, 850, 1108
FaeI	CATG	6 cut(s)	141, 432, 471, 573, 700, 1112
FatI	CATG	6 cut(s)	137, 428, 467, 569, 696, 1108
FauNDI	CATATG	1 cut(s)	868
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	2 cut(s)	82, 1038
Fnu4HI	GCNGC	7 cut(s)	384, 387, 642, 777, 847, 1114, 1117
FokI	GGATG	3 cut(s)	129, 766, 1145
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	7 cut(s)	384, 387, 642, 777, 847, 1114, 1117
FspBI	CTAG	3 cut(s)	380, 924, 947
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	7 cut(s)	384, 387, 642, 777, 847, 1114, 1117
GsaI	CCCAGC	1 cut(s)	1011
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	29, 44, 883
HapII	CCGG	2 cut(s)	30, 912
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	141, 432, 471, 573, 700, 1112
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	3 cut(s)	4, 57, 955
HpaII	CCGG	2 cut(s)	30, 912
HphI	GGTGA	2 cut(s)	311, 943
Hpy166II	GTNNAC	3 cut(s)	83, 1020, 1039
Hpy188I	TCNGA	3 cut(s)	226, 249, 1063
Hpy188III	TCNNGA	5 cut(s)	8, 110, 602, 962, 1025
Hpy8I	GTNNAC	3 cut(s)	83, 1020, 1039
HpyAV	CCTTC	2 cut(s)	275, 436
HpyCH4III	ACNGT	2 cut(s)	215, 1100
HpyCH4IV	ACGT	1 cut(s)	833
HpyCH4V	TGCA	7 cut(s)	276, 376, 432, 569, 776, 826, 1091
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 596, 852, 1092, 1113, 1122
HpyF3I	CTNAG	2 cut(s)	723, 861
HpySE526I	ACGT	1 cut(s)	833
Hsp92II	CATG	6 cut(s)	141, 432, 471, 573, 700, 1112
HspAI	GCGC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	226, 511, 613, 920
Lsp1109I	GCAGC	5 cut(s)	373, 395, 628, 788, 858
LweI	GCATC	3 cut(s)	385, 788, 1054
MaeI	CTAG	3 cut(s)	380, 924, 947
MaeII	ACGT	1 cut(s)	833
MaeIII	GTNAC	5 cut(s)	209, 215, 485, 516, 931
MalI	GATC	4 cut(s)	228, 513, 615, 922
MboI	GATC	4 cut(s)	226, 511, 613, 920
MboII	GAAGA	3 cut(s)	759, 887, 969
MfeI	CAATTG	1 cut(s)	767
MflI	RGATCY	1 cut(s)	920
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	7 cut(s)	98, 403, 433, 627, 753, 767, 941
MseI	TTAA	1 cut(s)	738
MslI	CAYNNNNRTG	2 cut(s)	568, 686
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	30, 912
MspR9I	CCNGG	3 cut(s)	31, 657, 784
MunI	CAATTG	1 cut(s)	767
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	2 cut(s)	657, 784
MwoI	GCNNNNNNNGC	6 cut(s)	26, 596, 852, 1092, 1113, 1122
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	1108
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	4 cut(s)	226, 511, 613, 920
NlaIII	CATG	6 cut(s)	141, 432, 471, 573, 700, 1112
NlaIV	GGNNCC	1 cut(s)	34
NmeAIII	GCCGAG	2 cut(s)	5, 859
NmuCI	GTSAC	2 cut(s)	516, 931
NspI	RCATGY	2 cut(s)	432, 700
PaeI	GCATGC	1 cut(s)	432
PaeR7I	CTCGAG	1 cut(s)	960
PaqCI	CACCTGC	1 cut(s)	574
PctI	GAATGC	1 cut(s)	592
PfeI	GAWTC	3 cut(s)	4, 57, 955
PflMI	CCANNNNNTGG	1 cut(s)	1109
PkrI	GCNGC	7 cut(s)	385, 388, 643, 778, 848, 1115, 1118
PpuMI	RGGWCCY	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	417
Psp1406I	AACGTT	1 cut(s)	833
Psp5II	RGGWCCY	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	655, 782
PspFI	CCCAGC	1 cut(s)	1007
PspGI	CCWGG	2 cut(s)	655, 782
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	33, 104
PspPPI	RGGWCCY	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	920
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	4 cut(s)	367, 680, 695, 733
RsaNI	GTAC	4 cut(s)	366, 679, 694, 732
RseI	CAYNNNNRTG	2 cut(s)	568, 686
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	7 cut(s)	384, 387, 642, 777, 847, 1114, 1117
Sau3AI	GATC	4 cut(s)	226, 511, 613, 920
Sau96I	GGNCC	2 cut(s)	33, 104
ScrFI	CCNGG	3 cut(s)	31, 657, 784
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	3 cut(s)	385, 788, 1054
SfcI	CTRYAG	2 cut(s)	774, 1081
Sfr274I	CTCGAG	1 cut(s)	960
SinI	GGWCC	2 cut(s)	33, 104
SlaI	CTCGAG	1 cut(s)	960
SmiMI	CAYNNNNRTG	2 cut(s)	568, 686
SmlI	CTYRAG	4 cut(s)	108, 600, 960, 1025
SmoI	CTYRAG	4 cut(s)	108, 600, 960, 1025
SphI	GCATGC	1 cut(s)	432
Sse9I	AATT	7 cut(s)	98, 403, 433, 627, 753, 767, 941
SsiI	CCGC	2 cut(s)	1113, 1116
SspMI	CTAG	3 cut(s)	380, 924, 947
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	3 cut(s)	29, 655, 782
StyI	CCWWGG	3 cut(s)	39, 850, 1108
TaaI	ACNGT	2 cut(s)	215, 1100
TaiI	ACGT	1 cut(s)	836
TaqI	TCGA	3 cut(s)	92, 549, 961
TasI	AATT	7 cut(s)	98, 403, 433, 627, 753, 767, 941
TatI	WGTACW	3 cut(s)	365, 678, 693
TauI	GCSGC	2 cut(s)	1116, 1119
TfiI	GAWTC	3 cut(s)	4, 57, 955
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	5 cut(s)	265, 299, 643, 844, 1051
TseFI	GTSAC	2 cut(s)	516, 931
TseI	GCWGC	5 cut(s)	383, 386, 641, 776, 846
Tsp45I	GTSAC	2 cut(s)	516, 931
TspDTI	ATGAA	4 cut(s)	17, 78, 226, 887
TspRI	CASTG	5 cut(s)	265, 299, 643, 844, 1051
Van91I	CCANNNNNTGG	1 cut(s)	1109
VpaK11BI	GGWCC	2 cut(s)	33, 104
XapI	RAATTY	2 cut(s)	403, 941
XceI	RCATGY	2 cut(s)	432, 700
XhoI	CTCGAG	1 cut(s)	960
XmiI	GTMKAC	2 cut(s)	82, 1038
XspI	CTAG	3 cut(s)	380, 924, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.