Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016973

Physical Location & Seq

Genomic Coordinates Forward (+)

75143463 .. 75147263

Gene Structure 3801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG475100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCTGACATTTGAGGAAGAGGCAAGTCTACTTTCATCAATACAATTTGGTCCTCAAGATGGATGGCTTTCGTCATTTTACTCATGCTTGATAAAAAAGTATGACAAAGAAAATGTTGTAGAAGCAAACTTTGGAGAACTTGAAAAAGAGAGATGTAACAGTAACACTTCCGATCTTTCGTTCATTCACACTCTGAAAACCAACACTGACCTTCTGGTGTGCAAAGCAGAATACTACCATCAGTGTGGTGAATATCAAAAATCTTTGAACTTACCTCTTTACACTTTCCATCTCAAAAGTACATTAGTGCATCTAGCAGCTGCGATGGAACTTGGGAATTCAAATGAGCTCTATCTTATGGCATGCAATTTAGTGAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTTCTGTTGGCTGTTACTACTATTGTATAAAAAAGTATGATCAGTCACGCCGTTATTTCAGTAAGGCTACCAATGTCGATGGAAACTTTCCACCTGCATGGATAGGATATGGGAATGCTTATTCTGCTCAAGATGAGGGAGATCAAGCTATGTCAATTTATCGCACTGCTGCTCGTTTGTTTCCAGGGGGTCATTTACCAACTTTGTACATTGGAATGGAGTACATGCGAACCCACAGCTACAAACTTGCTGAGCAGGGTACTCTTAATGATGGAAGAGTAATTGCCGTGAAGCAATTGTCTGCAGCATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032875 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_2 TPR_3 TPR_7 TPR_8

Protein Analysis

239

Amino Acids

27.13

Weight (kDa)

6.07

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337671 RchiOBHm_Chr3g0469831
rosa_rugosa	Rorug01G0382100 Rorug06G0145400
rosa_samantha	Rh1AG081800 Rh3AG153900 Rh3BG178000 Rh3CG168700 Rh3DG298300 Rh4AG193800 Rh5DG475100 Rh7BG197900
rosa_wichuraiana	Rw2G033380 Rw7G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	4 cut(s)	301, 614, 629, 667
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	143, 268, 342
AjnI	CCWGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	4 cut(s)	320, 349, 554, 645
AluI	AGCT	4 cut(s)	320, 349, 554, 645
Alw21I	GWGCWC	1 cut(s)	351
ApeKI	GCWGC	4 cut(s)	317, 320, 575, 710
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	307, 329, 562
BccI	CCATC	7 cut(s)	53, 57, 246, 297, 319, 479, 671
BceAI	ACGGC	2 cut(s)	441, 677
BciT130I	CCWGG	1 cut(s)	591
BclI	TGATCA	1 cut(s)	445
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	708
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	4 cut(s)	318, 321, 576, 711
BlpI	GCTNAGC	1 cut(s)	657
BlsI	GCNGC	4 cut(s)	319, 322, 577, 712
Bme1390I	CCNGG	1 cut(s)	591
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	1 cut(s)	319
Bpu1102I	GCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	2 cut(s)	39, 519
BsaJI	CCNNGG	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	590
BseGI	GGATG	2 cut(s)	68, 713
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	648
BseXI	GCAGC	3 cut(s)	307, 329, 562
BsiHKAI	GWGCWC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	172, 445, 547
Bsp1720I	GCTNAGC	1 cut(s)	657
BspCNI	CTCAG	1 cut(s)	649
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	508
BsrGI	TGTACA	1 cut(s)	612
BssECI	CCNNGG	1 cut(s)	590
BssMI	GATC	3 cut(s)	172, 445, 547
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	2 cut(s)	12, 676
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	657
BstF5I	GGATG	2 cut(s)	68, 713
BstKTI	GATC	3 cut(s)	175, 448, 550
BstMBI	GATC	3 cut(s)	172, 445, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	591
BstNSI	RCATGY	2 cut(s)	366, 634
BstSCI	CCNGG	1 cut(s)	589
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	307, 329, 562
BstXI	CCANNNNNNTGG	2 cut(s)	245, 504
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	68, 713
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	204, 248, 570
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	4 cut(s)	300, 613, 628, 666
CviAII	CATG	5 cut(s)	84, 363, 402, 504, 631
CviJI	RGCY	8 cut(s)	67, 320, 349, 395, 417, 473, 554, 645
CviKI_1	RGCY	8 cut(s)	67, 320, 349, 395, 417, 473, 554, 645
CviQI	GTAC	4 cut(s)	300, 613, 628, 666
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	3 cut(s)	174, 447, 549
DpnII	GATC	3 cut(s)	172, 445, 547
Eam1104I	CTCTTC	2 cut(s)	12, 676
EarI	CTCTTC	2 cut(s)	12, 676
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	5 cut(s)	87, 366, 405, 507, 634
FatI	CATG	5 cut(s)	83, 362, 401, 503, 630
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	4 cut(s)	318, 321, 576, 711
FokI	GGATG	2 cut(s)	75, 700
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	4 cut(s)	318, 321, 576, 711
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	4 cut(s)	318, 321, 576, 711
Hin1II	CATG	5 cut(s)	87, 366, 405, 507, 634
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	172, 195
Hpy188III	TCNNGA	2 cut(s)	56, 536
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	221, 370
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	5 cut(s)	222, 310, 366, 503, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	1 cut(s)	657
Hsp92II	CATG	5 cut(s)	87, 366, 405, 507, 634
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	172, 445, 547
LpnPI	CCDG	5 cut(s)	200, 513, 576, 603, 647
Lsp1109I	GCAGC	3 cut(s)	307, 329, 562
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	4 cut(s)	155, 161, 419, 450
MalI	GATC	3 cut(s)	174, 447, 549
MboI	GATC	3 cut(s)	172, 445, 547
MboII	GAAGA	2 cut(s)	29, 693
MfeI	CAATTG	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	6 cut(s)	44, 337, 367, 561, 687, 701
MnlI	CCTC	6 cut(s)	7, 13, 63, 285, 396, 535
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	3 cut(s)	243, 502, 620
MspA1I	CMGCKG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	591
MunI	CAATTG	1 cut(s)	701
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	591
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	3 cut(s)	172, 445, 547
NlaIII	CATG	5 cut(s)	87, 366, 405, 507, 634
NmuCI	GTSAC	1 cut(s)	450
NspI	RCATGY	2 cut(s)	366, 634
PaeI	GCATGC	1 cut(s)	366
PaqCI	CACCTGC	1 cut(s)	508
PctI	GAATGC	1 cut(s)	526
PkrI	GCNGC	4 cut(s)	319, 322, 577, 712
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspPI	GGNCC	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	712
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	4 cut(s)	301, 614, 629, 667
RsaNI	GTAC	4 cut(s)	300, 613, 628, 666
RseI	CAYNNNNRTG	3 cut(s)	243, 502, 620
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	4 cut(s)	318, 321, 576, 711
Sau3AI	GATC	3 cut(s)	172, 445, 547
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	591
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	7 cut(s)	213, 277, 322, 351, 502, 556, 647
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	708
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	3 cut(s)	243, 502, 620
SmlI	CTYRAG	2 cut(s)	54, 534
SmoI	CTYRAG	2 cut(s)	54, 534
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	6 cut(s)	44, 337, 367, 561, 687, 701
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	589
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	483
TasI	AATT	6 cut(s)	44, 337, 367, 561, 687, 701
TatI	WGTACW	3 cut(s)	299, 612, 627
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	3 cut(s)	211, 248, 577
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	4 cut(s)	317, 320, 575, 710
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	2 cut(s)	24, 172
TspRI	CASTG	3 cut(s)	211, 248, 577
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	2 cut(s)	366, 634
XmiI	GTMKAC	1 cut(s)	28
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.