Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016973

Physical Location & Seq

Genomic Coordinates Reverse (-)

15567938 .. 15571685

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCTGACATTTGAGGAAGAGGCAAGTCTACTTTCATCGATACAATTTGGTCCTCAAGATGGATGGCTTTCGTCATTTTACTCATGCTTGATAAAAAAGTATGACAAAGAAAATGTTGTAGAAGCAAACTTTGGAGAACTTGAAAAAGAGAGATGTAACAGTAACACTTCCGATCTTTCGTTCATTCACACTCTGAAAACCAACACTGACCTTCTGGTGTGCAAAGCAGAATACTACCAGTGTGGTGAATATCAAAAAAGCTTTGAACTTACCTCTTTCCTACTTGAAAAAGACACTTTCCATCTCAAAAGTACATTAGTGCATCTAGCAGCTGCGATGGAACTTGGGAATTCAAATGAGCTCTATCTTATGGCATGCAATTTAGTGAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTTCTGTTGGCTGTTACTACTATTGTATAAAAAAGTATGATCAGTCACGCCGTTATTTCAGTAAGGCTACCAATGTCGATGGAAACTTTCCACCTGCATGGATAGGATATGGGAATGCTTATTCTGCTCAAGATGAGGGAGATCAAGCTATGTCAATTTATCGCACTGCTGCTCGTTTGTTTCCAGGGTGTCATTTACCAACTTTGTACATTGGAATGGAGTACATGCGAACCCACAACTACAAACTTGCTGAGCAGGGTACTCTTAATGATGGAAGAGTAATTGCCGTGAAGCAATTGTCTGCAGCATCCTGGCAAGGAAAAAATGAGTTTCTCCCTTGTTGTGTGTTCTTGCAGGCAACTACAGTGACTAAGAAGAAGTTGAGGCTGAGAATTTGGAACCTGCTAAGTACATTATGTATTCAAATGGTTTTTGATTTGGTCGACCCACAAATAGAAGTCCTGAAACACTGCCAAGTGTTAAATAAGGTACTCGATAAGAATGGGGCTGCTCCAGCTAGAAGTGTTTTGGCGTGGATTCTAAAAAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032875 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_2 TPR_3 TPR_7 TPR_8

Protein Analysis

323

Amino Acids

36.85

Weight (kDa)

7.89

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337671 RchiOBHm_Chr3g0469831
rosa_rugosa	Rorug01G0382100 Rorug06G0145400
rosa_samantha	Rh1AG081800 Rh3AG153900 Rh3BG178000 Rh3CG168700 Rh3DG298300 Rh4AG193800 Rh5DG475100 Rh7BG197900
rosa_wichuraiana	Rw2G033380 Rw7G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
Acc36I	ACCTGC	2 cut(s)	520, 828
AccI	GTMKAC	2 cut(s)	28, 861
AcsI	RAATTY	3 cut(s)	349, 810, 966
AfaI	GTAC	6 cut(s)	313, 626, 641, 679, 829, 909
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	5 cut(s)	143, 266, 287, 354, 842
AjnI	CCWGG	2 cut(s)	601, 728
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	5 cut(s)	261, 332, 361, 566, 935
AluI	AGCT	5 cut(s)	261, 332, 361, 566, 935
Alw21I	GWGCWC	1 cut(s)	363
ApeKI	GCWGC	5 cut(s)	329, 332, 587, 722, 926
ApoI	RAATTY	3 cut(s)	349, 810, 966
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	5 cut(s)	319, 341, 574, 734, 913
BccI	CCATC	6 cut(s)	53, 57, 309, 331, 491, 683
BceAI	ACGGC	2 cut(s)	453, 689
BciT130I	CCWGG	2 cut(s)	603, 730
BclI	TGATCA	1 cut(s)	457
BfaI	CTAG	2 cut(s)	326, 936
BfmI	CTRYAG	2 cut(s)	720, 780
BfuAI	ACCTGC	2 cut(s)	520, 828
BisI	GCNGC	5 cut(s)	330, 333, 588, 723, 927
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	5 cut(s)	331, 334, 589, 724, 928
Bme1390I	CCNGG	2 cut(s)	603, 730
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	818
BmrFI	CCNGG	2 cut(s)	603, 730
BmsI	GCATC	2 cut(s)	331, 734
BpmI	CTGGAG	1 cut(s)	915
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	2 cut(s)	39, 531
Bsa29I	ATCGAT	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	603, 730
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	2 cut(s)	68, 725
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	660, 797
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	5 cut(s)	319, 341, 574, 734, 913
BshVI	ATCGAT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	3 cut(s)	172, 457, 559
Bsp1720I	GCTNAGC	1 cut(s)	669
BspCNI	CTCAG	2 cut(s)	661, 798
BspDI	ATCGAT	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	818
BspMAI	CTGCAG	1 cut(s)	724
BspMI	ACCTGC	2 cut(s)	520, 828
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	3 cut(s)	172, 457, 559
Bst2UI	CCWGG	2 cut(s)	603, 730
Bst4CI	ACNGT	2 cut(s)	161, 784
Bst6I	CTCTTC	2 cut(s)	12, 688
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	376, 774
BstDEI	CTNAG	4 cut(s)	669, 789, 806, 824
BstF5I	GGATG	2 cut(s)	68, 725
BstKTI	GATC	3 cut(s)	175, 460, 562
BstMBI	GATC	3 cut(s)	172, 457, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 932
BstNI	CCWGG	2 cut(s)	603, 730
BstNSI	RCATGY	2 cut(s)	378, 646
BstSCI	CCNGG	2 cut(s)	601, 728
BstSFI	CTRYAG	2 cut(s)	720, 780
BstV1I	GCAGC	5 cut(s)	319, 341, 574, 734, 913
BstXI	CCANNNNNNTGG	1 cut(s)	516
Bsu15I	ATCGAT	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	68, 725
BtsI	GCAGTG	2 cut(s)	582, 886
BtsIMutI	CAGTG	5 cut(s)	204, 245, 582, 789, 886
BveI	ACCTGC	2 cut(s)	520, 828
Cac8I	GCNNGC	2 cut(s)	376, 774
Cfr13I	GGNCC	1 cut(s)	50
ClaI	ATCGAT	1 cut(s)	38
Csp6I	GTAC	6 cut(s)	312, 625, 640, 678, 828, 908
CviAII	CATG	5 cut(s)	84, 375, 414, 516, 643
CviQI	GTAC	6 cut(s)	312, 625, 640, 678, 828, 908
DdeI	CTNAG	4 cut(s)	669, 789, 806, 824
DpnI	GATC	3 cut(s)	174, 459, 561
DpnII	GATC	3 cut(s)	172, 457, 559
Eam1104I	CTCTTC	2 cut(s)	12, 688
EarI	CTCTTC	2 cut(s)	12, 688
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	2 cut(s)	601, 728
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	5 cut(s)	87, 378, 417, 519, 646
FatI	CATG	5 cut(s)	83, 374, 413, 515, 642
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	2 cut(s)	28, 861
Fnu4HI	GCNGC	5 cut(s)	330, 333, 588, 723, 927
FokI	GGATG	2 cut(s)	75, 712
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	5 cut(s)	330, 333, 588, 723, 927
FspBI	CTAG	2 cut(s)	326, 936
GluI	GCNGC	5 cut(s)	330, 333, 588, 723, 927
GsuI	CTGGAG	1 cut(s)	915
Hin1II	CATG	5 cut(s)	87, 378, 417, 519, 646
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	1 cut(s)	955
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	29, 862
Hpy188I	TCNGA	2 cut(s)	172, 195
Hpy188III	TCNNGA	3 cut(s)	56, 548, 880
Hpy8I	GTNNAC	2 cut(s)	29, 862
HpyAV	CCTTC	2 cut(s)	221, 382
HpyCH4III	ACNGT	2 cut(s)	161, 784
HpyCH4V	TGCA	6 cut(s)	222, 322, 378, 515, 722, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 932
HpyF3I	CTNAG	4 cut(s)	669, 789, 806, 824
Hsp92II	CATG	5 cut(s)	87, 378, 417, 519, 646
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	172, 457, 559
LmnI	GCTCC	1 cut(s)	934
Lsp1109I	GCAGC	5 cut(s)	319, 341, 574, 734, 913
LweI	GCATC	2 cut(s)	331, 734
MaeI	CTAG	2 cut(s)	326, 936
MaeIII	GTNAC	5 cut(s)	155, 161, 431, 462, 784
MalI	GATC	3 cut(s)	174, 459, 561
MboI	GATC	3 cut(s)	172, 457, 559
MboII	GAAGA	3 cut(s)	29, 705, 805
MfeI	CAATTG	1 cut(s)	713
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	8 cut(s)	44, 349, 379, 573, 699, 713, 810, 966
MnlI	CCTC	7 cut(s)	7, 13, 63, 283, 408, 547, 795
MseI	TTAA	2 cut(s)	684, 899
MslI	CAYNNNNRTG	2 cut(s)	514, 632
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	603, 730
MunI	CAATTG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	603, 730
MwoI	GCNNNNNNNGC	2 cut(s)	542, 932
NdeII	GATC	3 cut(s)	172, 457, 559
NlaIII	CATG	5 cut(s)	87, 378, 417, 519, 646
NlaIV	GGNNCC	1 cut(s)	818
NmuCI	GTSAC	2 cut(s)	462, 784
NspI	RCATGY	2 cut(s)	378, 646
PaeI	GCATGC	1 cut(s)	378
PaqCI	CACCTGC	1 cut(s)	520
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	955
PkrI	GCNGC	5 cut(s)	331, 334, 589, 724, 928
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	601, 728
PspGI	CCWGG	2 cut(s)	601, 728
PspN4I	GGNNCC	1 cut(s)	818
PspPI	GGNCC	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	724
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	6 cut(s)	313, 626, 641, 679, 829, 909
RsaNI	GTAC	6 cut(s)	312, 625, 640, 678, 828, 908
RseI	CAYNNNNRTG	2 cut(s)	514, 632
SacI	GAGCTC	1 cut(s)	363
SalI	GTCGAC	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	684, 899
SatI	GCNGC	5 cut(s)	330, 333, 588, 723, 927
Sau3AI	GATC	3 cut(s)	172, 457, 559
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	603, 730
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	331, 734
SfcI	CTRYAG	2 cut(s)	720, 780
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	514, 632
SmlI	CTYRAG	2 cut(s)	54, 546
SmoI	CTYRAG	2 cut(s)	54, 546
SphI	GCATGC	1 cut(s)	378
Sse9I	AATT	8 cut(s)	44, 349, 379, 573, 699, 713, 810, 966
SspMI	CTAG	2 cut(s)	326, 936
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	601, 728
TaaI	ACNGT	2 cut(s)	161, 784
TaqI	TCGA	4 cut(s)	38, 495, 861, 912
TasI	AATT	8 cut(s)	44, 349, 379, 573, 699, 713, 810, 966
TatI	WGTACW	4 cut(s)	311, 624, 639, 827
TfiI	GAWTC	1 cut(s)	955
Tru1I	TTAA	2 cut(s)	684, 899
Tru9I	TTAA	2 cut(s)	684, 899
TscAI	CASTG	5 cut(s)	211, 245, 589, 789, 893
TseFI	GTSAC	2 cut(s)	462, 784
TseI	GCWGC	5 cut(s)	329, 332, 587, 722, 926
Tsp45I	GTSAC	2 cut(s)	462, 784
TspDTI	ATGAA	2 cut(s)	24, 172
TspRI	CASTG	5 cut(s)	211, 245, 589, 789, 893
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	3 cut(s)	349, 810, 966
XceI	RCATGY	2 cut(s)	378, 646
XmiI	GTMKAC	2 cut(s)	28, 861
XspI	CTAG	2 cut(s)	326, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.