RchiOBHm_Chr4g0398601

Ribosomal RNA processing protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012270
Physical Location & Seq
Forward (+)
15155126 .. 15156299
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37076

Sequence Viewer

Length: 975 bp
ATGGACGGCGAAACGGCATCGGAATCCGGCCTAACACTGATAAAGCAGCTCGCATCTTGCAACAATGGCAGCCGCGGCCGGGCCCTTAGGGTTCTCCTCAAGACCTGGCTCCCCACCCAGCTGAACCTCTCCGACGACCACATGAAGAAGCTCTGGAAAGGCCTCTTCTACTGCATGTGGCACGCCGACAAGGCCCCGGCCCAGGCCCAACTCATCGACCGCCTCTCCTCCCTCGTCCCCAGCCTCCACCTCCCGCTCGCCATCGACTACTTCTCGGCGTTCCTCCTCACCATGCGCCGCGAATGGTCCGGCATCGACGCCCTGAGGTTAGACAAGTTCTACCTTTTGATTCGTAGATTCATGGCTAGCTTCTTTGCTTTGATGAGGAATAATTCTTGGGATTTGGAGCTTGTGAAAAAATTGATGGGGGTTTTAATGGAGGGGAGTTTTTTCGCCGAGGATAAGTTTCCGGCGAAAGGGGTTAATTACCATATTGCCTCTGTGTTTCTTGAGGAATTGAGGCCGTTTATGCCGGTGAGGAAGGAAGTGGTTGACGTGGTTTTGGTGGAGTTTGTTAGGGTTATGGCGAAAGCCAATGATAAGGTGTTGGTGGGGAAGGTTAAGGGGAGTATGTTTGATGTGTTGCTTGGGATGGGGAGGAGGCTGTTGGAGGTTAGGAAGTTGGGGGAGGATGTGGATTCGGGGGATGATGTGGTGGTGTTTGGGTCGGTTGCGCTGTGCTTGGGGTTTTCGAGCAGGTTTCATGAAATGGGGGAGTCCGAGGAGTGCTGTCAGGGGAATAGGAAGGTGTTGTTTGGGTTGGACGAGGAGTTTTTGAAGTTGGAGAAGGAGTTGGCGGCTTCTGGGATTGAGGTTTTGATTCCTGATGCTGTGAGGAATGACGGTGATGAGGAAGTGCCGAGTTTGATTCCTATTGTGGTGCAAGAAGCGAGAGAAGGACCCTGGTGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000791 GO:0000792 GO:0001652 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010563 GO:0010604 GO:0010628 GO:0010921 GO:0010923 GO:0010941 GO:0010942 GO:0016070 GO:0016072 GO:0019219 GO:0019220 GO:0019222 GO:0022613 GO:0030684 GO:0030687 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034260 GO:0034470 GO:0034641 GO:0034660 GO:0035303 GO:0035305 GO:0035821 GO:0042254 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043086 GO:0043087 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043900 GO:0043902 GO:0043903 GO:0043921 GO:0043923 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046782 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0050434 GO:0050789 GO:0050790 GO:0050792 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051252 GO:0051254 GO:0051336 GO:0051346 GO:0051702 GO:0051704 GO:0051707 GO:0051817 GO:0051851 GO:0052312 GO:0052472 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098586 GO:0140110 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop52

Protein Analysis

324

Amino Acids

36.58

Weight (kDa)

5.56

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop52 PF05997 11 - 227 2.2e-62 Nucleolar protein,Nop52
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 747
AccBSI CCGCTC 1 cut(s) 256
AccII CGCG 2 cut(s) 75, 300
AciI CCGC 6 cut(s) 73, 75, 220, 254, 298, 857
AcoI YGGCCR 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 318
AfiI CCNNNNNNNGG 3 cut(s) 79, 202, 476
AgsI TTSAA 1 cut(s) 838
AjiI CACGTC 1 cut(s) 556
AjnI CCWGG 3 cut(s) 104, 201, 962
AluBI AGCT 5 cut(s) 49, 121, 151, 369, 409
AluI AGCT 5 cut(s) 49, 121, 151, 369, 409
AoxI GGCC 8 cut(s) 28, 76, 81, 160, 192, 198, 204, 521
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 46, 69
AspLEI GCGC 2 cut(s) 297, 736
AspS9I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 959
AsuC2I CCSGG 2 cut(s) 80, 197
AsuHPI GGTGA 3 cut(s) 280, 547, 917
AsuNHI GCTAGC 1 cut(s) 365
AvaII GGWCC 2 cut(s) 306, 959
AxyI CCTNAGG 2 cut(s) 86, 323
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 58, 81
BccI CCATC 3 cut(s) 269, 418, 646
BceAI ACGGC 3 cut(s) 22, 30, 508
BciT130I CCWGG 3 cut(s) 106, 203, 964
BcnI CCSGG 2 cut(s) 80, 197
BfaI CTAG 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 747
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
BlsI GCNGC 6 cut(s) 48, 71, 74, 77, 299, 859
Bme1390I CCNGG 5 cut(s) 80, 106, 197, 203, 964
Bme18I GGWCC 2 cut(s) 306, 959
BmgBI CACGTC 1 cut(s) 556
BmgT120I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 959
BmiI GGNNCC 4 cut(s) 83, 110, 195, 961
BmrFI CCNGG 5 cut(s) 80, 106, 197, 203, 964
BmsI GCATC 4 cut(s) 26, 62, 321, 877
BmtI GCTAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 83, 530
BpuMI CCSGG 2 cut(s) 80, 197
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 6 cut(s) 73, 195, 201, 456, 780, 962
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 836, 866
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 202, 476
Bse118I RCCGGY 1 cut(s) 532
Bse21I CCTNAGG 2 cut(s) 86, 323
BseBI CCWGG 3 cut(s) 106, 203, 964
BseDI CCNNGG 6 cut(s) 73, 195, 201, 456, 780, 962
BseGI GGATG 3 cut(s) 657, 697, 712
BseLI CCNNNNNNNGG 3 cut(s) 79, 202, 476
BseMII CTCAG 1 cut(s) 314
BseRI GAGGAG 6 cut(s) 86, 217, 275, 673, 797, 842
BseSI GKGCMC 1 cut(s) 85
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 58, 81
BseYI CCCAGC 2 cut(s) 117, 239
Bsh1236I CGCG 2 cut(s) 75, 300
Bsh1285I CGRYCG 2 cut(s) 79, 220
BshFI GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
BsiEI CGRYCG 2 cut(s) 79, 220
BsiSI CCGG 6 cut(s) 27, 79, 197, 309, 470, 533
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 79, 202, 476
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 85
BspACI CCGC 6 cut(s) 73, 75, 220, 254, 298, 857
BspANI GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
BspCNI CTCAG 1 cut(s) 315
BspFNI CGCG 2 cut(s) 75, 300
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 4 cut(s) 83, 110, 195, 961
BspMI ACCTGC 1 cut(s) 747
BspOI GCTAGC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 532
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 6 cut(s) 73, 195, 201, 456, 780, 962
BssNI GRCGYC 1 cut(s) 318
Bst2UI CCWGG 3 cut(s) 106, 203, 964
Bst4CI ACNGT 1 cut(s) 905
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 4 cut(s) 51, 183, 258, 367
BstDEI CTNAG 2 cut(s) 86, 323
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 3 cut(s) 657, 697, 712
BstFNI CGCG 2 cut(s) 75, 300
BstHHI GCGC 2 cut(s) 297, 736
BstMCI CGRYCG 2 cut(s) 79, 220
BstMWI GCNNNNNNNGC 4 cut(s) 66, 75, 191, 529
BstNI CCWGG 3 cut(s) 106, 203, 964
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 5 cut(s) 78, 104, 195, 201, 962
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 2 cut(s) 75, 300
BstV1I GCAGC 2 cut(s) 58, 81
BstZI CGGCCG 1 cut(s) 76
Bsu36I CCTNAGG 2 cut(s) 86, 323
BsuRI GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
BtgI CCRYGG 1 cut(s) 73
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 3 cut(s) 657, 697, 712
BtsIMutI CAGTG 1 cut(s) 35
BveI ACCTGC 1 cut(s) 747
Cac8I GCNNGC 4 cut(s) 51, 183, 258, 367
CciI TCATGA 1 cut(s) 763
CfoI GCGC 2 cut(s) 297, 736
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 959
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 1 cut(s) 326
CviAII CATG 5 cut(s) 142, 175, 292, 361, 764
DdeI CTNAG 2 cut(s) 86, 323
EaeI YGGCCR 1 cut(s) 76
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 306, 959
Eco52I CGGCCG 1 cut(s) 76
Eco81I CCTNAGG 2 cut(s) 86, 323
EcoO109I RGGNCCY 3 cut(s) 82, 193, 959
EcoRII CCWGG 3 cut(s) 104, 201, 962
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 5 cut(s) 145, 178, 295, 364, 767
FaiI YATR 9 cut(s) 143, 176, 293, 362, 492, 530, 584, 632, 765
FaqI GGGAC 1 cut(s) 221
FatI CATG 5 cut(s) 141, 174, 291, 360, 763
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
FokI GGATG 3 cut(s) 664, 704, 719
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
FspBI CTAG 1 cut(s) 366
GlaI GCGC 2 cut(s) 296, 735
GluI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
GsaI CCCAGC 2 cut(s) 121, 243
HaeIII GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
HapII CCGG 6 cut(s) 27, 79, 197, 309, 470, 533
HgaI GACGC 1 cut(s) 326
HhaI GCGC 2 cut(s) 297, 736
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 5 cut(s) 145, 178, 295, 364, 767
Hin6I GCGC 2 cut(s) 295, 734
HinP1I GCGC 2 cut(s) 295, 734
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 7 cut(s) 23, 349, 357, 698, 776, 880, 928
HpaII CCGG 6 cut(s) 27, 79, 197, 309, 470, 533
HphI GGTGA 3 cut(s) 280, 547, 917
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 3 cut(s) 22, 133, 781
Hpy188III TCNNGA 5 cut(s) 100, 154, 509, 764, 884
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 2 cut(s) 137, 320
HpyAV CCTTC 5 cut(s) 535, 610, 799, 841, 950
HpyCH4III ACNGT 1 cut(s) 905
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 3 cut(s) 60, 174, 943
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 75, 191, 529
HpyF3I CTNAG 2 cut(s) 86, 323
HpySE526I ACGT 1 cut(s) 555
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 5 cut(s) 145, 178, 295, 364, 767
HspAI GCGC 2 cut(s) 295, 734
KspI CCGCGG 1 cut(s) 76
LmnI GCTCC 2 cut(s) 114, 406
Lsp1109I GCAGC 2 cut(s) 58, 81
LweI GCATC 4 cut(s) 26, 62, 321, 877
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 555
MbiI CCGCTC 1 cut(s) 256
MboII GAAGA 2 cut(s) 157, 157
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 4 cut(s) 391, 419, 484, 515
MlyI GAGTC 1 cut(s) 785
MmeI TCCRAC 4 cut(s) 156, 648, 801, 822
MseI TTAA 3 cut(s) 434, 483, 621
MspA1I CMGCKG 2 cut(s) 75, 121
MspI CCGG 6 cut(s) 27, 79, 197, 309, 470, 533
MspR9I CCNGG 5 cut(s) 80, 106, 197, 203, 964
MvaI CCWGG 3 cut(s) 106, 203, 964
MvnI CGCG 2 cut(s) 75, 300
MwoI GCNNNNNNNGC 4 cut(s) 66, 75, 191, 529
NciI CCSGG 2 cut(s) 80, 197
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 5 cut(s) 145, 178, 295, 364, 767
NlaIV GGNNCC 4 cut(s) 83, 110, 195, 961
NmeAIII GCCGAG 3 cut(s) 254, 481, 945
NspI RCATGY 1 cut(s) 178
PagI TCATGA 1 cut(s) 763
PceI AGGCCT 1 cut(s) 162
PfeI GAWTC 6 cut(s) 23, 349, 357, 698, 880, 928
PkrI GCNGC 6 cut(s) 48, 71, 74, 77, 299, 859
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
PpuMI RGGWCCY 1 cut(s) 959
Psp5II RGGWCCY 1 cut(s) 959
Psp6I CCWGG 3 cut(s) 104, 201, 962
PspFI CCCAGC 2 cut(s) 117, 239
PspGI CCWGG 3 cut(s) 104, 201, 962
PspN4I GGNNCC 4 cut(s) 83, 110, 195, 961
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 959
PspPPI RGGWCCY 1 cut(s) 959
PvuII CAGCTG 1 cut(s) 121
SacII CCGCGG 1 cut(s) 76
SaqAI TTAA 3 cut(s) 434, 483, 621
SatI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
Sau96I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 959
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 5 cut(s) 80, 106, 197, 203, 964
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 4 cut(s) 26, 62, 321, 877
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 2 cut(s) 306, 959
SmlI CTYRAG 2 cut(s) 98, 509
SmoI CTYRAG 2 cut(s) 98, 509
Sse9I AATT 4 cut(s) 391, 419, 484, 515
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 6 cut(s) 73, 75, 220, 254, 298, 857
SspMI CTAG 1 cut(s) 366
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 5 cut(s) 78, 104, 195, 201, 962
TaaI ACNGT 1 cut(s) 905
TaiI ACGT 1 cut(s) 558
TaqI TCGA 4 cut(s) 216, 264, 315, 752
TasI AATT 4 cut(s) 391, 419, 484, 515
TauI GCSGC 4 cut(s) 75, 78, 300, 860
TfiI GAWTC 6 cut(s) 23, 349, 357, 698, 880, 928
Tru1I TTAA 3 cut(s) 434, 483, 621
Tru9I TTAA 3 cut(s) 434, 483, 621
TscAI CASTG 1 cut(s) 42
TseI GCWGC 2 cut(s) 46, 69
TspDTI ATGAA 4 cut(s) 158, 349, 752, 780
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 306, 959
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.