Rorug04G0009800

Ribosomal RNA processing protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012270
Physical Location & Seq
Reverse (-)
1607766 .. 1609167
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0009800.1

Sequence Viewer

Length: 1017 bp
ATGATAGGCAAAGACTCTGTGGATTCGGATGAACTTGAGATTACTGGAGACCCGGAGTTTTTTGATCTCAACACTTTTAGAGCAGCCACAGAAAACTTTTCAGAATCCAACAAACTTGGCCAAGGCGGTTTTGGCACTGTTTATAAGGGTGAGTTGCCAAATCACCAGAAGGTTGCTGTCAAAAGATTGATCAGGACTAGACACGGGATTGAAGAATTTAGAAATGAAGTTGCACTGATAGCCAGACTGCAACACAGGAATCTCGTGAAACTTGTAGGCTACTGTAGAAGTAGAGAAGAAAGGATGCTAGTCCTGGAATACATGCCGAACAAGAGCTTGGACTCGTTTCTTTTTGGTAACACAAGAAGGTCTTTAGATTGGCAAAAGCGCTTTCAGATCATCAACGGGGTTGCTCGTGCTATTTTATATCTTCACCAAGATTCTAGACTGAGGATCATTCATAGGGATCTCAAGACTAGCAATGTTCTTCTAGACGCCGACATGAAGCCGAAAATTTCTGATTTCGGCGTGGCAAGACTAATCCATGGAGACCAACTGCAGAATAGAACGAACAAAACTGCTGGAATATTTGGTTACATAGCACCAGAATATGCAAACTTCGGACAATTTTCAACAAAATCCGATGTCTATAGTTTCGGGATCATAGTATTGGAGATTGTAAGCGGCAAGAAGAACAGTAGCTCTTATTGGGATTCCACGTACTTGGTACGACATGCTTGGGAGCTTTGGAAAGAAGACAGATCCTTAGAATTGGTGGATTCATCTCTACAGTCCTATCAGCCAGATGAAGTCCTCAGATGTATTCATGTTGGTCTTTTGTGTGTGGAAGACGATTCAGAAAACCGACCGGCCATGTCAGATGTTACTTTTATGTTATGTAGTGAGGCAGCTCTTCCTTCTCCCATACAGCCTGCATTTGGCTTCAACATGGGTTCCAGAAATACTCTTGATCCGTCAAACAACGACTTGAGTATAACTGAAATGGAAGGGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000791 GO:0000792 GO:0001652 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010563 GO:0010604 GO:0010628 GO:0010921 GO:0010923 GO:0010941 GO:0010942 GO:0016070 GO:0016072 GO:0019219 GO:0019220 GO:0019222 GO:0022613 GO:0030684 GO:0030687 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034260 GO:0034470 GO:0034641 GO:0034660 GO:0035303 GO:0035305 GO:0035821 GO:0042254 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043086 GO:0043087 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043900 GO:0043902 GO:0043903 GO:0043921 GO:0043923 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046782 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0050434 GO:0050789 GO:0050790 GO:0050792 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051252 GO:0051254 GO:0051336 GO:0051346 GO:0051702 GO:0051704 GO:0051707 GO:0051817 GO:0051851 GO:0052312 GO:0052472 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098586 GO:0140110 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop52

Protein Analysis

338

Amino Acids

38.5

Weight (kDa)

5.96

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 34 - 234 2.1e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 296 3.6e-51 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AciI CCGC 2 cut(s) 126, 684
AclWI GGATC 5 cut(s) 461, 474, 668, 756, 965
AcoI YGGCCR 2 cut(s) 118, 870
AcsI RAATTY 2 cut(s) 215, 513
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 2 cut(s) 722, 729
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 938
AgsI TTSAA 3 cut(s) 212, 633, 946
AjnI CCWGG 1 cut(s) 312
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 4 cut(s) 336, 702, 745, 911
AluI AGCT 4 cut(s) 336, 702, 745, 911
Alw26I GTCTC 2 cut(s) 42, 543
AlwI GGATC 5 cut(s) 461, 474, 668, 756, 965
Aor51HI AGCGCT 1 cut(s) 389
AoxI GGCC 2 cut(s) 118, 870
ApeKI GCWGC 2 cut(s) 83, 908
ApoI RAATTY 2 cut(s) 215, 513
AspLEI GCGC 1 cut(s) 390
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 155, 161, 425
BalI TGGCCA 1 cut(s) 120
BauI CACGAG 2 cut(s) 263, 414
BbsI GAAGAC 2 cut(s) 762, 855
BbvI GCAGC 2 cut(s) 95, 920
BciT130I CCWGG 1 cut(s) 314
BclI TGATCA 1 cut(s) 189
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 42, 543
BfaI CTAG 5 cut(s) 198, 308, 444, 477, 491
BfmI CTRYAG 4 cut(s) 283, 557, 649, 788
BfoI RGCGCY 1 cut(s) 391
BisI GCNGC 3 cut(s) 84, 685, 909
BlsI GCNGC 3 cut(s) 85, 686, 910
Bme1390I CCNGG 2 cut(s) 53, 314
BmiI GGNNCC 1 cut(s) 955
BmrFI CCNGG 2 cut(s) 53, 314
BmsI GCATC 1 cut(s) 294
BpiI GAAGAC 2 cut(s) 762, 855
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 3 cut(s) 56, 455, 1009
BpuMI CCSGG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 495
BsaI GGTCTC 2 cut(s) 42, 543
BsaJI CCNNGG 2 cut(s) 121, 544
Bsc4I CCNNNNNNNGG 1 cut(s) 938
Bse118I RCCGGY 1 cut(s) 868
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 121, 544
BseGI GGATG 2 cut(s) 34, 309
BseLI CCNNNNNNNGG 1 cut(s) 938
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 2 cut(s) 440, 829
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 95, 920
Bsh1285I CGRYCG 1 cut(s) 869
BshFI GGCC 2 cut(s) 120, 872
BsiEI CGRYCG 1 cut(s) 869
BsiSI CCGG 2 cut(s) 53, 869
BslI CCNNNNNNNGG 1 cut(s) 938
BsmAI GTCTC 2 cut(s) 42, 543
BsnI GGCC 2 cut(s) 120, 872
Bso31I GGTCTC 2 cut(s) 42, 543
Bsp143I GATC 8 cut(s) 64, 189, 396, 453, 466, 660, 761, 970
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 2 cut(s) 126, 684
BspANI GGCC 2 cut(s) 120, 872
BspCNI CTCAG 2 cut(s) 441, 828
BspLI GGNNCC 1 cut(s) 955
BspMAI CTGCAG 1 cut(s) 561
BspPI GGATC 5 cut(s) 461, 474, 668, 756, 965
BspQI GCTCTTC 1 cut(s) 918
BspTNI GGTCTC 2 cut(s) 42, 543
BsrDI GCAATG 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 868
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 868
BssECI CCNNGG 2 cut(s) 121, 544
BssMI GATC 8 cut(s) 64, 189, 396, 453, 466, 660, 761, 970
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 2 cut(s) 263, 414
BssT1I CCWWGG 2 cut(s) 121, 544
Bst2BI CACGAG 2 cut(s) 263, 414
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 4 cut(s) 139, 284, 698, 792
Bst6I CTCTTC 1 cut(s) 918
BstACI GRCGYC 1 cut(s) 495
BstBAI YACGTR 1 cut(s) 720
BstC8I GCNNGC 1 cut(s) 933
BstDEI CTNAG 3 cut(s) 449, 766, 815
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 34, 309
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 8 cut(s) 67, 192, 399, 456, 469, 663, 764, 973
BstMAI GTCTC 2 cut(s) 42, 543
BstMBI GATC 8 cut(s) 64, 189, 396, 453, 466, 660, 761, 970
BstMCI CGRYCG 1 cut(s) 869
BstMWI GCNNNNNNNGC 2 cut(s) 132, 239
BstNI CCWGG 1 cut(s) 314
BstNSI RCATGY 2 cut(s) 325, 737
BstSCI CCNGG 2 cut(s) 51, 312
BstSFI CTRYAG 4 cut(s) 283, 557, 649, 788
BstV1I GCAGC 2 cut(s) 95, 920
BstV2I GAAGAC 2 cut(s) 762, 855
BstX2I RGATCY 2 cut(s) 466, 761
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 2 cut(s) 466, 761
BsuRI GGCC 2 cut(s) 120, 872
BtgI CCRYGG 1 cut(s) 544
BtsCI GGATG 2 cut(s) 34, 309
BtsIMutI CAGTG 2 cut(s) 135, 233
Cac8I GCNNGC 1 cut(s) 933
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 868
CseI GACGC 1 cut(s) 503
Csp6I GTAC 2 cut(s) 721, 728
CviAII CATG 7 cut(s) 322, 502, 545, 734, 827, 874, 949
CviQI GTAC 2 cut(s) 721, 728
DdeI CTNAG 3 cut(s) 449, 766, 815
DpnI GATC 8 cut(s) 66, 191, 398, 455, 468, 662, 763, 972
DpnII GATC 8 cut(s) 64, 189, 396, 453, 466, 660, 761, 970
EaeI YGGCCR 2 cut(s) 118, 870
Eam1104I CTCTTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 918
Eco130I CCWWGG 2 cut(s) 121, 544
Eco31I GGTCTC 2 cut(s) 42, 543
Eco47III AGCGCT 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 2 cut(s) 121, 544
ErhI CCWWGG 2 cut(s) 121, 544
FaeI CATG 7 cut(s) 325, 505, 548, 737, 830, 877, 952
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FatI CATG 7 cut(s) 321, 501, 544, 733, 826, 873, 948
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 84, 685, 909
FokI GGATG 2 cut(s) 41, 316
Fsp4HI GCNGC 3 cut(s) 84, 685, 909
FspBI CTAG 5 cut(s) 198, 308, 444, 477, 491
GlaI GCGC 1 cut(s) 389
GluI GCNGC 3 cut(s) 84, 685, 909
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 2 cut(s) 120, 872
HapII CCGG 2 cut(s) 53, 869
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 7 cut(s) 325, 505, 548, 737, 830, 877, 952
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 9 cut(s) 14, 23, 104, 259, 341, 440, 713, 779, 854
HpaII CCGG 2 cut(s) 53, 869
HphI GGTGA 3 cut(s) 155, 161, 425
Hpy188I TCNGA 9 cut(s) 28, 103, 396, 520, 623, 643, 818, 859, 880
Hpy188III TCNNGA 8 cut(s) 193, 265, 444, 472, 491, 658, 957, 968
HpyAV CCTTC 4 cut(s) 163, 360, 927, 1001
HpyCH4III ACNGT 4 cut(s) 139, 284, 698, 792
HpyCH4IV ACGT 1 cut(s) 719
HpyCH4V TGCA 5 cut(s) 233, 250, 559, 614, 935
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 239
HpyF3I CTNAG 3 cut(s) 449, 766, 815
HpySE526I ACGT 1 cut(s) 719
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 7 cut(s) 325, 505, 548, 737, 830, 877, 952
HspAI GCGC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 8 cut(s) 64, 189, 396, 453, 466, 660, 761, 970
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 1 cut(s) 742
Lsp1109I GCAGC 2 cut(s) 95, 920
LweI GCATC 1 cut(s) 294
MaeI CTAG 5 cut(s) 198, 308, 444, 477, 491
MaeII ACGT 1 cut(s) 719
MaeIII GTNAC 3 cut(s) 356, 593, 883
MalI GATC 8 cut(s) 66, 191, 398, 455, 468, 662, 763, 972
MboI GATC 8 cut(s) 64, 189, 396, 453, 466, 660, 761, 970
MboII GAAGA 8 cut(s) 224, 308, 422, 479, 703, 767, 860, 905
MflI RGATCY 2 cut(s) 466, 761
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 4 cut(s) 215, 513, 626, 770
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 2 cut(s) 8, 335
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 3 cut(s) 444, 824, 898
Mox20I TGGCCA 1 cut(s) 120
MscI TGGCCA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 120
MspI CCGG 2 cut(s) 53, 869
MspR9I CCNGG 2 cut(s) 53, 314
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 132, 239
NciI CCSGG 1 cut(s) 53
NcoI CCATGG 1 cut(s) 544
NdeII GATC 8 cut(s) 64, 189, 396, 453, 466, 660, 761, 970
NlaIII CATG 7 cut(s) 325, 505, 548, 737, 830, 877, 952
NlaIV GGNNCC 1 cut(s) 955
NspI RCATGY 2 cut(s) 325, 737
PciSI GCTCTTC 1 cut(s) 918
PfeI GAWTC 7 cut(s) 23, 104, 259, 440, 713, 779, 854
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 3 cut(s) 85, 686, 910
PleI GAGTC 2 cut(s) 8, 335
PpsI GAGTC 2 cut(s) 8, 335
Ppu21I YACGTR 1 cut(s) 720
PsiI TTATAA 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 955
PstI CTGCAG 1 cut(s) 561
PsuI RGATCY 2 cut(s) 466, 761
RsaI GTAC 2 cut(s) 722, 729
RsaNI GTAC 2 cut(s) 721, 728
SapI GCTCTTC 1 cut(s) 918
SatI GCNGC 3 cut(s) 84, 685, 909
Sau3AI GATC 8 cut(s) 64, 189, 396, 453, 466, 660, 761, 970
SchI GAGTC 2 cut(s) 8, 335
ScrFI CCNGG 2 cut(s) 53, 314
SetI ASST 7 cut(s) 174, 338, 371, 704, 722, 747, 913
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 4 cut(s) 283, 557, 649, 788
SmlI CTYRAG 3 cut(s) 35, 470, 988
SmoI CTYRAG 3 cut(s) 35, 470, 988
Sse9I AATT 4 cut(s) 215, 513, 626, 770
SsiI CCGC 2 cut(s) 126, 684
SspI AATATT 1 cut(s) 588
SspMI CTAG 5 cut(s) 198, 308, 444, 477, 491
StyD4I CCNGG 2 cut(s) 51, 312
StyI CCWWGG 2 cut(s) 121, 544
TaaI ACNGT 4 cut(s) 139, 284, 698, 792
TaiI ACGT 1 cut(s) 722
TasI AATT 4 cut(s) 215, 513, 626, 770
TauI GCSGC 1 cut(s) 687
TfiI GAWTC 7 cut(s) 23, 104, 259, 440, 713, 779, 854
TscAI CASTG 2 cut(s) 142, 240
TseI GCWGC 2 cut(s) 83, 908
TspDTI ATGAA 7 cut(s) 45, 240, 449, 518, 771, 815, 822
TspGWI ACGGA 1 cut(s) 963
TspRI CASTG 2 cut(s) 142, 240
XapI RAATTY 2 cut(s) 215, 513
XbaI TCTAGA 2 cut(s) 443, 490
XceI RCATGY 2 cut(s) 325, 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XspI CTAG 5 cut(s) 198, 308, 444, 477, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.