Rmu_sc0005217.1_g000016

Ribosomal RNA processing protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005217.1
OG0012270
Physical Location & Seq
Forward (+)
57495 .. 58615
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005217.1_g000016.1.cds

Sequence Viewer

Length: 1121 bp
atggacggcgaaacggcatcggaatccggcctaacactgataaagcagctcgcatcttgcaacaatggcagccgcggccgggcccttagggttctcctcaagacctggctccccacccagctcaacctctccgacgacgacatgaagaagctctggaaagggctcttctactgcatgtggcacgccgacaaggccccggcccaggcccaactcatcgaccgcctctcctccctcgtccccagcctccacctcccgctcgccatcgactacttctcggcgttcctcctcaccatgcgccgcgaatggtccggcatcgacgccctgaggttagacaagttctaccttttgattcgtagattcatggctagcttctttgctttgatgaggaacaattcttgggatttggagcttgtgaaaaaattgatgggggttttaatggaggggagttttttcgccgaggataagtttccggcgaaaggggttaattaccatattgcctctgtgtttcttgaggaactgaggccgtttatgccggtgaggaaggaagtggttgaggtggttttggtggggtttgttagggttatggcgaaagcgaatgataaggtgttggtggggaaggttaaggggagtatgtttgatgtgttgcttgggatggggaggaggctgttggaggttaggaagttgggggaggatgtggattcgggggatgatgtggtggtgtttgggtcggttgcgctgtgcttggggttttcgagcaggtttcatgaaatgggggagtccgaggagtgctgtcaggggaataggaaggtgttgtttgggttggacgaggagtttttgaagttggagaaggacttggcggcttctgggattgaggttttgattcctgatgctgtgaggaatgatggcgatgaggaagtgccgagtttgattcctattgtgggtgacgggatggaggttgacggctcggaacctggcgaggttgccaatgggtctgctgggaagcctttgaagaagtgcaagaagcaagagaaggaccatggtggtgctgatgttaaggcagagaagaagaagaagaaaaagaagaaggagaagaagcagaatgggattttggattctgaccc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000791 GO:0000792 GO:0001652 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010563 GO:0010604 GO:0010628 GO:0010921 GO:0010923 GO:0010941 GO:0010942 GO:0016070 GO:0016072 GO:0019219 GO:0019220 GO:0019222 GO:0022613 GO:0030684 GO:0030687 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034260 GO:0034470 GO:0034641 GO:0034660 GO:0035303 GO:0035305 GO:0035821 GO:0042254 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043086 GO:0043087 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043900 GO:0043902 GO:0043903 GO:0043921 GO:0043923 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046782 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0050434 GO:0050789 GO:0050790 GO:0050792 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051252 GO:0051254 GO:0051336 GO:0051346 GO:0051702 GO:0051704 GO:0051707 GO:0051817 GO:0051851 GO:0052312 GO:0052472 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098586 GO:0140110 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop52

Protein Analysis

374

Amino Acids

41.63

Weight (kDa)

6.97

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 747
AccBSI CCGCTC 1 cut(s) 256
AccII CGCG 2 cut(s) 75, 300
AciI CCGC 6 cut(s) 73, 75, 220, 254, 298, 857
AcoI YGGCCR 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 318
AfiI CCNNNNNNNGG 4 cut(s) 79, 202, 476, 938
AgsI TTSAA 2 cut(s) 838, 1009
AjnI CCWGG 3 cut(s) 104, 201, 970
AjuI GAANNNNNNNTTGG 1 cut(s) 1091
AluBI AGCT 5 cut(s) 49, 121, 151, 369, 409
AluI AGCT 5 cut(s) 49, 121, 151, 369, 409
AoxI GGCC 7 cut(s) 28, 76, 81, 192, 198, 204, 521
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 46, 69
AspLEI GCGC 2 cut(s) 297, 736
AspS9I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1033
AsuC2I CCSGG 2 cut(s) 80, 197
AsuHPI GGTGA 3 cut(s) 280, 547, 953
AsuNHI GCTAGC 1 cut(s) 365
AvaII GGWCC 2 cut(s) 306, 1033
AxyI CCTNAGG 2 cut(s) 86, 323
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 2 cut(s) 85, 165
BbvI GCAGC 2 cut(s) 58, 81
BccI CCATC 5 cut(s) 269, 418, 646, 896, 943
BceAI ACGGC 4 cut(s) 22, 30, 508, 976
BciT130I CCWGG 3 cut(s) 106, 203, 972
BcnI CCSGG 2 cut(s) 80, 197
BfaI CTAG 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 747
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
BlsI GCNGC 6 cut(s) 48, 71, 74, 77, 299, 859
Bme1390I CCNGG 5 cut(s) 80, 106, 197, 203, 972
Bme18I GGWCC 2 cut(s) 306, 1033
BmgT120I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1033
BmiI GGNNCC 4 cut(s) 83, 110, 195, 969
BmrFI CCNGG 5 cut(s) 80, 106, 197, 203, 972
BmsI GCATC 4 cut(s) 26, 62, 321, 877
BmtI GCTAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 83, 530
BpuMI CCSGG 2 cut(s) 80, 197
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 6 cut(s) 73, 195, 201, 456, 780, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 202, 476, 938
Bse118I RCCGGY 1 cut(s) 532
Bse21I CCTNAGG 2 cut(s) 86, 323
BseBI CCWGG 3 cut(s) 106, 203, 972
BseDI CCNNGG 6 cut(s) 73, 195, 201, 456, 780, 1036
BseGI GGATG 4 cut(s) 657, 697, 712, 954
BseLI CCNNNNNNNGG 4 cut(s) 79, 202, 476, 938
BseMII CTCAG 2 cut(s) 314, 509
BseRI GAGGAG 6 cut(s) 86, 217, 275, 673, 797, 842
BseSI GKGCMC 1 cut(s) 85
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 58, 81
BseYI CCCAGC 3 cut(s) 117, 239, 995
Bsh1236I CGCG 2 cut(s) 75, 300
Bsh1285I CGRYCG 2 cut(s) 79, 220
BshFI GGCC 7 cut(s) 30, 78, 83, 194, 200, 206, 523
BsiEI CGRYCG 2 cut(s) 79, 220
BsiSI CCGG 6 cut(s) 27, 79, 197, 309, 470, 533
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 4 cut(s) 79, 202, 476, 938
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 7 cut(s) 30, 78, 83, 194, 200, 206, 523
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 85, 165
Bsp19I CCATGG 1 cut(s) 1036
BspACI CCGC 6 cut(s) 73, 75, 220, 254, 298, 857
BspANI GGCC 7 cut(s) 30, 78, 83, 194, 200, 206, 523
BspCNI CTCAG 2 cut(s) 315, 510
BspFNI CGCG 2 cut(s) 75, 300
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 4 cut(s) 83, 110, 195, 969
BspMI ACCTGC 1 cut(s) 747
BspOI GCTAGC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 532
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 6 cut(s) 73, 195, 201, 456, 780, 1036
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 1036
Bst2UI CCWGG 3 cut(s) 106, 203, 972
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 4 cut(s) 51, 183, 258, 367
BstDEI CTNAG 3 cut(s) 86, 323, 518
BstDSI CCRYGG 2 cut(s) 73, 1036
BstF5I GGATG 4 cut(s) 657, 697, 712, 954
BstFNI CGCG 2 cut(s) 75, 300
BstHHI GCGC 2 cut(s) 297, 736
BstMCI CGRYCG 2 cut(s) 79, 220
BstMWI GCNNNNNNNGC 4 cut(s) 66, 75, 191, 529
BstNI CCWGG 3 cut(s) 106, 203, 972
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 5 cut(s) 78, 104, 195, 201, 970
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 2 cut(s) 75, 300
BstV1I GCAGC 2 cut(s) 58, 81
BstZI CGGCCG 1 cut(s) 76
Bsu36I CCTNAGG 2 cut(s) 86, 323
BsuRI GGCC 7 cut(s) 30, 78, 83, 194, 200, 206, 523
BtgI CCRYGG 2 cut(s) 73, 1036
BtgZI GCGATG 1 cut(s) 921
BtsCI GGATG 4 cut(s) 657, 697, 712, 954
BtsIMutI CAGTG 1 cut(s) 35
BveI ACCTGC 1 cut(s) 747
Cac8I GCNNGC 4 cut(s) 51, 183, 258, 367
CciI TCATGA 1 cut(s) 763
CfoI GCGC 2 cut(s) 297, 736
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1033
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 1 cut(s) 326
CviAII CATG 6 cut(s) 142, 175, 292, 361, 764, 1037
DdeI CTNAG 3 cut(s) 86, 323, 518
EaeI YGGCCR 1 cut(s) 76
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 1036
Eco24I GRGCYC 2 cut(s) 85, 165
Eco47I GGWCC 2 cut(s) 306, 1033
Eco52I CGGCCG 1 cut(s) 76
Eco81I CCTNAGG 2 cut(s) 86, 323
EcoO109I RGGNCCY 2 cut(s) 82, 193
EcoRII CCWGG 3 cut(s) 104, 201, 970
EcoT14I CCWWGG 1 cut(s) 1036
EcoT38I GRGCYC 2 cut(s) 85, 165
ErhI CCWWGG 1 cut(s) 1036
FaeI CATG 6 cut(s) 145, 178, 295, 364, 767, 1040
FaqI GGGAC 1 cut(s) 221
FatI CATG 6 cut(s) 141, 174, 291, 360, 763, 1036
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
FokI GGATG 4 cut(s) 664, 704, 719, 961
FriOI GRGCYC 2 cut(s) 85, 165
Fsp4HI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
FspBI CTAG 1 cut(s) 366
GlaI GCGC 2 cut(s) 296, 735
GluI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
GsaI CCCAGC 3 cut(s) 121, 243, 999
HaeIII GGCC 7 cut(s) 30, 78, 83, 194, 200, 206, 523
HapII CCGG 6 cut(s) 27, 79, 197, 309, 470, 533
HgaI GACGC 1 cut(s) 326
HhaI GCGC 2 cut(s) 297, 736
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 6 cut(s) 145, 178, 295, 364, 767, 1040
Hin6I GCGC 2 cut(s) 295, 734
HinP1I GCGC 2 cut(s) 295, 734
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HinfI GANTC 8 cut(s) 23, 349, 357, 698, 776, 880, 928, 1112
HpaII CCGG 6 cut(s) 27, 79, 197, 309, 470, 533
HphI GGTGA 3 cut(s) 280, 547, 953
Hpy166II GTNNAC 1 cut(s) 958
Hpy188I TCNGA 5 cut(s) 22, 133, 781, 967, 1117
Hpy188III TCNNGA 5 cut(s) 100, 154, 509, 764, 884
Hpy8I GTNNAC 1 cut(s) 958
Hpy99I CGWCG 3 cut(s) 137, 140, 320
HpyAV CCTTC 6 cut(s) 535, 610, 799, 841, 1024, 1078
HpyCH4V TGCA 3 cut(s) 60, 174, 1017
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 75, 191, 529
HpyF3I CTNAG 3 cut(s) 86, 323, 518
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 6 cut(s) 145, 178, 295, 364, 767, 1040
HspAI GCGC 2 cut(s) 295, 734
KspI CCGCGG 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 2 cut(s) 114, 406
Lsp1109I GCAGC 2 cut(s) 58, 81
LweI GCATC 4 cut(s) 26, 62, 321, 877
MaeI CTAG 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 941
MbiI CCGCTC 1 cut(s) 256
MboII GAAGA 9 cut(s) 157, 157, 1021, 1075, 1078, 1081, 1084, 1093, 1102
MhlI GDGCHC 2 cut(s) 85, 165
MluCI AATT 3 cut(s) 391, 419, 484
MlyI GAGTC 1 cut(s) 785
MmeI TCCRAC 4 cut(s) 156, 648, 801, 822
MseI TTAA 4 cut(s) 434, 483, 621, 1053
MslI CAYNNNNRTG 1 cut(s) 1041
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 6 cut(s) 27, 79, 197, 309, 470, 533
MspR9I CCNGG 5 cut(s) 80, 106, 197, 203, 972
MvaI CCWGG 3 cut(s) 106, 203, 972
MvnI CGCG 2 cut(s) 75, 300
MwoI GCNNNNNNNGC 4 cut(s) 66, 75, 191, 529
NciI CCSGG 2 cut(s) 80, 197
NcoI CCATGG 1 cut(s) 1036
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 6 cut(s) 145, 178, 295, 364, 767, 1040
NlaIV GGNNCC 4 cut(s) 83, 110, 195, 969
NmeAIII GCCGAG 3 cut(s) 254, 481, 945
NmuCI GTSAC 1 cut(s) 941
NspI RCATGY 1 cut(s) 178
PagI TCATGA 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 170
PfeI GAWTC 7 cut(s) 23, 349, 357, 698, 880, 928, 1112
PkrI GCNGC 6 cut(s) 48, 71, 74, 77, 299, 859
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
Psp6I CCWGG 3 cut(s) 104, 201, 970
PspFI CCCAGC 3 cut(s) 117, 239, 995
PspGI CCWGG 3 cut(s) 104, 201, 970
PspN4I GGNNCC 4 cut(s) 83, 110, 195, 969
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1033
RseI CAYNNNNRTG 1 cut(s) 1041
SacII CCGCGG 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 4 cut(s) 434, 483, 621, 1053
SatI GCNGC 6 cut(s) 47, 70, 73, 76, 298, 858
Sau96I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1033
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 5 cut(s) 80, 106, 197, 203, 972
SduI GDGCHC 2 cut(s) 85, 165
SfaNI GCATC 4 cut(s) 26, 62, 321, 877
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 2 cut(s) 306, 1033
SmiMI CAYNNNNRTG 1 cut(s) 1041
SmlI CTYRAG 2 cut(s) 98, 509
SmoI CTYRAG 2 cut(s) 98, 509
Sse9I AATT 3 cut(s) 391, 419, 484
SsiI CCGC 6 cut(s) 73, 75, 220, 254, 298, 857
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 5 cut(s) 78, 104, 195, 201, 970
StyI CCWWGG 1 cut(s) 1036
TaqI TCGA 4 cut(s) 216, 264, 315, 752
TasI AATT 3 cut(s) 391, 419, 484
TauI GCSGC 4 cut(s) 75, 78, 300, 860
TfiI GAWTC 7 cut(s) 23, 349, 357, 698, 880, 928, 1112
Tru1I TTAA 4 cut(s) 434, 483, 621, 1053
Tru9I TTAA 4 cut(s) 434, 483, 621, 1053
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 941
TseI GCWGC 2 cut(s) 46, 69
Tsp45I GTSAC 1 cut(s) 941
TspDTI ATGAA 4 cut(s) 158, 349, 752, 780
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 306, 1033
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.