Rroxscaffold_5G00343580

Ribosomal RNA processing protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012270
Physical Location & Seq
Forward (+)
13071177 .. 13077735
6559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343580.1

Sequence Viewer

Length: 1812 bp
ATGGACGCCGAAACGGCATCGGAATCCGGCCTAACCCTGATAAAGCAGCTCGCATCTTGCAACAATGGCAGCCGCGGCCGGGCCCTTAGGGTTCTCCTCAAGACCTGGCTCCCCACCCAGCTCAACCTCTCCGACGACCACATGAAGAAGCTCTGGAAAGGCCTCTTCTACTGCATGTGGCACGCCGACAAGGCCCCGGCCCAGGCCCAACTCATCGACCGCCTCTCCTCCCTCGTCCCCAGCCTCCACCTCCCCCTCGCCATCGACTACTTCTCGGCGTTCCTCCTCACCATGCGCCGTGAATGGTCCGGCATCGACGCCCTGAGGTTAGACAAGTTCTACCTTTTGATTCGTAGATTCATGGCTAGCTTCTTTGCTTTGATGAGGATTAATTCTTGGGATTTGGAGCTTGTGAAAAAATTGATGGGGGTTTTAATGGAGGGGTGTTTTTTCGCCGAGGATAAGTTTCCGGCGAAAGGGGTTGATTACCATATTGCCTCTGTGTTTCTTGAGGAATTGAGGCCGTTTATGCCGGTGAGGAAGGAGGTGGTTGAGGTGGTTTTGGTGGGGTTTGTTAGGGTTATGGCGAAAGCGAATGATAAGGTGTTGGTGGGGAAGATTAAGGGGAGTGTGTTTGATGTGTTGCTTGGGATGGGGAGGAGGCTGTTGGAGGTTAGGAAGTTGGGGGAGGATGTGGATTCGGGGGATGATGTGGTGGTGTTTGGGTCGGTTGCACTTTGCTTGGGGTTTTCGAGCAGGTTTCATGAAATGGGGGAGTCGGAGGAGTGCTGTCAGGGGAATAGGAAGGTGTTGTTTGGGTTGGATGAGGAGTTTTTGAAGTTGGAGAAGGAGTTGGCGGCTTCTGGGATTGAGGTTTTGATTCCTGATGCTGTGAGGAATGATGATGAGGAAGTGCCGAGCTTGATTCCTATTGTGGGTGAGGGGATGGAGGTTGACGGCTCGGAACCTGGTGAGGTTGCCAATGGGTCTGCTGGGAAGCCTTTGAAGAAGTGCAAGAAGCGAGAGAAGGACGCTGGTGGTGCTGATGTTAAGGCAGAGAAGAAGAAGAAGAAAAAGAAGAAGGAGAAGAAGAAGCAGAATGGGATTTTGGATTCTGACCCTGAGAAGAGCCATACGGATAGGGAGAATGAGAATGTGGATGCAAATGGTGAGAACCCAGAAACTGAACAGGTTACAGATGGTGATGAGATAAAACTCGATGATTATGCGATCTCGAACCTCCAGATGCAGTTTGAGAAGATTGCTGCTGAAGCAGGCTTGGATCATGATCTTCCAAGTGCCTGTGAATTGCCGGCAGCTACAGCTAATGGTACTGTCTCTAAGAAGAGAAAGAGAGTGAAGAAAGCTGATGAAGTTGTGGAGGATGGCACCAAGGCAAAGAGTGGGGAGAAGAGTGCAAAGAAGGTAAAGTTTTCCATGAAAAACAACTTGGTGTGGAAGCCGCAAAGCCCTTTACCCCCTCAAAATCTAAGATTGCCACCATCTGCTACACCTAGAGGAAGTGCACTCAAGCAAGGAGTACCTCCAGGTCCCGTCAGGGAAATGCCTCCCCCAACCAAAAAAGTGAAAAGACTTGTGAAGAAGACTCGGAAAGTTGTCAAACGCGTAAAGAAGCTTGCTGAGATAGAAGAAGTTCCTGATTTCCAACTCGATGAAAACATGAAGCGACGCAGGCATGCTCGCCATAATGAACACCAACAGCTCCTGGAGATCAAAGACCACTCTTGGATCACTCTAAATCATCACTTGCCCTCACAAGAAAGCAATGTTAAGCTTATTGGAATCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000791 GO:0000792 GO:0001652 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010563 GO:0010604 GO:0010628 GO:0010921 GO:0010923 GO:0010941 GO:0010942 GO:0016070 GO:0016072 GO:0019219 GO:0019220 GO:0019222 GO:0022613 GO:0030684 GO:0030687 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034260 GO:0034470 GO:0034641 GO:0034660 GO:0035303 GO:0035305 GO:0035821 GO:0042254 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043086 GO:0043087 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043900 GO:0043902 GO:0043903 GO:0043921 GO:0043923 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046782 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0050434 GO:0050789 GO:0050790 GO:0050792 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051252 GO:0051254 GO:0051336 GO:0051346 GO:0051702 GO:0051704 GO:0051707 GO:0051817 GO:0051851 GO:0052312 GO:0052472 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098586 GO:0140110 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop52

Protein Analysis

603

Amino Acids

67.53

Weight (kDa)

8.97

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop52 PF05997 11 - 227 7.6e-62 Nucleolar protein,Nop52
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 1388
AccII CGCG 2 cut(s) 75, 1626
AciI CCGC 6 cut(s) 73, 75, 220, 857, 1463, 1807
AclWI GGATC 2 cut(s) 1290, 1757
AcoI YGGCCR 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 1290
AcyI GRCGYC 2 cut(s) 6, 318
AfaI GTAC 2 cut(s) 1333, 1542
AfiI CCNNNNNNNGG 4 cut(s) 79, 202, 476, 935
AflIII ACRYGT 1 cut(s) 1624
AgsI TTSAA 2 cut(s) 838, 1006
AjnI CCWGG 5 cut(s) 104, 201, 967, 1546, 1725
AjuI GAANNNNNNNTTGG 4 cut(s) 1091, 1123, 1433, 1465
Alw21I GWGCWC 1 cut(s) 1528
Alw26I GTCTC 1 cut(s) 1342
Alw44I GTGCAC 1 cut(s) 1524
AlwI GGATC 2 cut(s) 1290, 1757
AlwNI CAGNNNCTG 2 cut(s) 1184, 1726
AoxI GGCC 8 cut(s) 28, 76, 81, 160, 192, 198, 204, 521
ApaI GGGCCC 1 cut(s) 85
ApaLI GTGCAC 1 cut(s) 1524
ApeKI GCWGC 4 cut(s) 46, 69, 1265, 1316
AseI ATTAAT 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 1653
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1550
AsuC2I CCSGG 2 cut(s) 80, 197
AsuHPI GGTGA 6 cut(s) 280, 547, 950, 983, 1181, 1214
AsuNHI GCTAGC 1 cut(s) 365
AvaII GGWCC 2 cut(s) 306, 1550
AxyI CCTNAGG 2 cut(s) 86, 323
BaeGI GKGCMC 2 cut(s) 85, 1528
BanI GGYRCC 1 cut(s) 1388
BanII GRGCYC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 1610
Bbv12I GWGCWC 1 cut(s) 1528
BbvI GCAGC 4 cut(s) 58, 81, 1252, 1328
BccI CCATC 7 cut(s) 269, 418, 646, 940, 1193, 1379, 1510
BceAI ACGGC 4 cut(s) 30, 282, 508, 973
BcgI CGANNNNNNTGC 2 cut(s) 1208, 1242
BciT130I CCWGG 5 cut(s) 106, 203, 969, 1548, 1727
BcnI CCSGG 2 cut(s) 80, 197
BcoDI GTCTC 1 cut(s) 1342
BfaI CTAG 3 cut(s) 366, 1515, 1810
BfmI CTRYAG 1 cut(s) 1320
BfuAI ACCTGC 1 cut(s) 747
BglI GCCNNNNNGGC 2 cut(s) 14, 191
BisI GCNGC 8 cut(s) 47, 70, 73, 76, 858, 1266, 1317, 1463
BlsI GCNGC 8 cut(s) 48, 71, 74, 77, 859, 1267, 1318, 1464
Bme1390I CCNGG 7 cut(s) 80, 106, 197, 203, 969, 1548, 1727
Bme18I GGWCC 2 cut(s) 306, 1550
BmgT120I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1550
BmiI GGNNCC 6 cut(s) 83, 110, 195, 966, 1390, 1552
BmrFI CCNGG 7 cut(s) 80, 106, 197, 203, 969, 1548, 1727
BmsI GCATC 6 cut(s) 26, 62, 321, 877, 1150, 1236
BmtI GCTAGC 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 1610
BpmI CTGGAG 3 cut(s) 1226, 1530, 1748
BpuEI CTTGAG 3 cut(s) 83, 530, 1514
BpuMI CCSGG 2 cut(s) 80, 197
BsaBI GATNNNNATC 1 cut(s) 1287
BsaHI GRCGYC 2 cut(s) 6, 318
BsaJI CCNNGG 5 cut(s) 73, 195, 201, 456, 1392
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 836, 866
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 202, 476, 935
Bse118I RCCGGY 2 cut(s) 532, 1312
Bse21I CCTNAGG 2 cut(s) 86, 323
Bse3DI GCAATG 1 cut(s) 1792
Bse8I GATNNNNATC 1 cut(s) 1287
BseBI CCWGG 5 cut(s) 106, 203, 969, 1548, 1727
BseDI CCNNGG 5 cut(s) 73, 195, 201, 456, 1392
BseGI GGATG 7 cut(s) 657, 697, 712, 829, 951, 1165, 1390
BseJI GATNNNNATC 1 cut(s) 1287
BseLI CCNNNNNNNGG 4 cut(s) 79, 202, 476, 935
BseMI GCAATG 1 cut(s) 1792
BseMII CTCAG 3 cut(s) 314, 1113, 1632
BseRI GAGGAG 6 cut(s) 86, 217, 275, 673, 797, 842
BseSI GKGCMC 2 cut(s) 85, 1528
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 4 cut(s) 58, 81, 1252, 1328
BseYI CCCAGC 3 cut(s) 117, 239, 992
Bsh1236I CGCG 2 cut(s) 75, 1626
Bsh1285I CGRYCG 2 cut(s) 79, 220
BshFI GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
BshNI GGYRCC 1 cut(s) 1388
BsiEI CGRYCG 2 cut(s) 79, 220
BsiHKAI GWGCWC 1 cut(s) 1528
BsiSI CCGG 7 cut(s) 27, 79, 197, 309, 470, 533, 1313
BslFI GGGAC 2 cut(s) 221, 1536
BslI CCNNNNNNNGG 4 cut(s) 79, 202, 476, 935
BsmAI GTCTC 1 cut(s) 1342
BsmFI GGGAC 2 cut(s) 221, 1536
BsnI GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 85, 1528
Bsp143I GATC 5 cut(s) 1230, 1282, 1288, 1731, 1749
BspACI CCGC 6 cut(s) 73, 75, 220, 857, 1463, 1807
BspANI GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
BspCNI CTCAG 3 cut(s) 315, 1114, 1633
BspFNI CGCG 2 cut(s) 75, 1626
BspHI TCATGA 2 cut(s) 763, 1285
BspLI GGNNCC 6 cut(s) 83, 110, 195, 966, 1390, 1552
BspMI ACCTGC 1 cut(s) 747
BspOI GCTAGC 1 cut(s) 369
BspPI GGATC 2 cut(s) 1290, 1757
BspQI GCTCTTC 1 cut(s) 1121
BspT107I GGYRCC 1 cut(s) 1388
BsrDI GCAATG 1 cut(s) 1792
BsrFI RCCGGY 2 cut(s) 532, 1312
BssAI RCCGGY 2 cut(s) 532, 1312
BssECI CCNNGG 5 cut(s) 73, 195, 201, 456, 1392
BssMI GATC 5 cut(s) 1230, 1282, 1288, 1731, 1749
BssNI GRCGYC 2 cut(s) 6, 318
BssT1I CCWWGG 1 cut(s) 1392
Bst2UI CCWGG 5 cut(s) 106, 203, 969, 1548, 1727
Bst4CI ACNGT 1 cut(s) 1336
Bst6I CTCTTC 4 cut(s) 170, 1121, 1340, 1406
BstACI GRCGYC 2 cut(s) 6, 318
BstC8I GCNNGC 9 cut(s) 51, 183, 367, 1276, 1314, 1638, 1694, 1698, 1702
BstDEI CTNAG 6 cut(s) 86, 323, 1122, 1341, 1490, 1641
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 7 cut(s) 657, 697, 712, 829, 951, 1165, 1390
BstFNI CGCG 2 cut(s) 75, 1626
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 5 cut(s) 1233, 1285, 1291, 1734, 1752
BstMAI GTCTC 1 cut(s) 1342
BstMBI GATC 5 cut(s) 1230, 1282, 1288, 1731, 1749
BstMCI CGRYCG 2 cut(s) 79, 220
BstMWI GCNNNNNNNGC 9 cut(s) 14, 66, 75, 191, 529, 1040, 1271, 1322, 1693
BstNI CCWGG 5 cut(s) 106, 203, 969, 1548, 1727
BstNSI RCATGY 2 cut(s) 178, 1700
BstSCI CCNGG 7 cut(s) 78, 104, 195, 201, 967, 1546, 1725
BstSFI CTRYAG 1 cut(s) 1320
BstSLI GKGCMC 2 cut(s) 85, 1528
BstUI CGCG 2 cut(s) 75, 1626
BstV1I GCAGC 4 cut(s) 58, 81, 1252, 1328
BstV2I GAAGAC 1 cut(s) 1610
BstZI CGGCCG 1 cut(s) 76
Bsu36I CCTNAGG 2 cut(s) 86, 323
BsuRI GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 7 cut(s) 657, 697, 712, 829, 951, 1165, 1390
BveI ACCTGC 1 cut(s) 747
Cac8I GCNNGC 9 cut(s) 51, 183, 367, 1276, 1314, 1638, 1694, 1698, 1702
CaiI CAGNNNCTG 2 cut(s) 1184, 1726
CciI TCATGA 2 cut(s) 763, 1285
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 2 cut(s) 532, 1312
Cfr13I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1550
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 4 cut(s) 14, 326, 1040, 1698
CsiI ACCWGGT 1 cut(s) 967
Csp6I GTAC 2 cut(s) 1332, 1541
CviAII CATG 9 cut(s) 142, 175, 292, 361, 764, 1286, 1438, 1681, 1697
CviQI GTAC 2 cut(s) 1332, 1541
DdeI CTNAG 6 cut(s) 86, 323, 1122, 1341, 1490, 1641
DpnI GATC 5 cut(s) 1232, 1284, 1290, 1733, 1751
DpnII GATC 5 cut(s) 1230, 1282, 1288, 1731, 1749
EaeI YGGCCR 1 cut(s) 76
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 4 cut(s) 170, 1121, 1340, 1406
EarI CTCTTC 4 cut(s) 170, 1121, 1340, 1406
EclXI CGGCCG 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 1392
Eco147I AGGCCT 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 306, 1550
Eco52I CGGCCG 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 1290
Eco81I CCTNAGG 2 cut(s) 86, 323
EcoO109I RGGNCCY 3 cut(s) 82, 193, 1550
EcoRII CCWGG 5 cut(s) 104, 201, 967, 1546, 1725
EcoT14I CCWWGG 1 cut(s) 1392
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 1392
FaeI CATG 9 cut(s) 145, 178, 295, 364, 767, 1289, 1441, 1684, 1700
FaqI GGGAC 2 cut(s) 221, 1536
FatI CATG 9 cut(s) 141, 174, 291, 360, 763, 1285, 1437, 1680, 1696
Fnu4HI GCNGC 8 cut(s) 47, 70, 73, 76, 858, 1266, 1317, 1463
FokI GGATG 7 cut(s) 664, 704, 719, 836, 958, 1172, 1397
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 8 cut(s) 47, 70, 73, 76, 858, 1266, 1317, 1463
FspBI CTAG 3 cut(s) 366, 1515, 1810
GlaI GCGC 1 cut(s) 296
GluI GCNGC 8 cut(s) 47, 70, 73, 76, 858, 1266, 1317, 1463
GsaI CCCAGC 3 cut(s) 121, 243, 996
GsuI CTGGAG 3 cut(s) 1226, 1530, 1748
HaeIII GGCC 8 cut(s) 30, 78, 83, 162, 194, 200, 206, 523
HapII CCGG 7 cut(s) 27, 79, 197, 309, 470, 533, 1313
HgaI GACGC 4 cut(s) 14, 326, 1040, 1698
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 2 cut(s) 6, 318
Hin1II CATG 9 cut(s) 145, 178, 295, 364, 767, 1289, 1441, 1684, 1700
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HindIII AAGCTT 2 cut(s) 1634, 1793
HpaII CCGG 7 cut(s) 27, 79, 197, 309, 470, 533, 1313
HphI GGTGA 6 cut(s) 280, 547, 950, 983, 1181, 1214
Hpy166II GTNNAC 2 cut(s) 955, 1526
Hpy188I TCNGA 6 cut(s) 22, 133, 781, 964, 1117, 1611
Hpy188III TCNNGA 9 cut(s) 100, 154, 509, 764, 884, 1234, 1243, 1286, 1658
Hpy8I GTNNAC 2 cut(s) 955, 1526
Hpy99I CGWCG 3 cut(s) 137, 320, 1692
HpyAV CCTTC 6 cut(s) 535, 799, 841, 1021, 1075, 1417
HpyCH4III ACNGT 1 cut(s) 1336
HpyCH4V TGCA 8 cut(s) 60, 174, 734, 1014, 1163, 1249, 1418, 1526
HpyF10VI GCNNNNNNNGC 9 cut(s) 14, 66, 75, 191, 529, 1040, 1271, 1322, 1693
HpyF3I CTNAG 6 cut(s) 86, 323, 1122, 1341, 1490, 1641
Hsp92I GRCGYC 2 cut(s) 6, 318
Hsp92II CATG 9 cut(s) 145, 178, 295, 364, 767, 1289, 1441, 1684, 1700
HspAI GCGC 1 cut(s) 295
KroI GCCGGC 1 cut(s) 1312
KroNI GCCGGC 1 cut(s) 1314
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 5 cut(s) 1230, 1282, 1288, 1731, 1749
LguI GCTCTTC 1 cut(s) 1121
LmnI GCTCC 3 cut(s) 114, 406, 1728
Lsp1109I GCAGC 4 cut(s) 58, 81, 1252, 1328
LweI GCATC 6 cut(s) 26, 62, 321, 877, 1150, 1236
MabI ACCWGGT 1 cut(s) 967
MaeI CTAG 3 cut(s) 366, 1515, 1810
MaeIII GTNAC 1 cut(s) 1192
MalI GATC 5 cut(s) 1232, 1284, 1290, 1733, 1751
MboI GATC 5 cut(s) 1230, 1282, 1288, 1731, 1749
MhlI GDGCHC 2 cut(s) 85, 1528
MluCI AATT 4 cut(s) 391, 419, 515, 1307
MluI ACGCGT 1 cut(s) 1624
MlyI GAGTC 2 cut(s) 785, 1600
MmeI TCCRAC 6 cut(s) 156, 648, 759, 801, 822, 1690
MroNI GCCGGC 1 cut(s) 1312
MroXI GAANNNNTTC 1 cut(s) 1653
MseI TTAA 5 cut(s) 390, 434, 621, 1050, 1791
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 7 cut(s) 27, 79, 197, 309, 470, 533, 1313
MspR9I CCNGG 7 cut(s) 80, 106, 197, 203, 969, 1548, 1727
MvaI CCWGG 5 cut(s) 106, 203, 969, 1548, 1727
MvnI CGCG 2 cut(s) 75, 1626
MwoI GCNNNNNNNGC 9 cut(s) 14, 66, 75, 191, 529, 1040, 1271, 1322, 1693
NaeI GCCGGC 1 cut(s) 1314
NciI CCSGG 2 cut(s) 80, 197
NdeII GATC 5 cut(s) 1230, 1282, 1288, 1731, 1749
NgoMIV GCCGGC 1 cut(s) 1312
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 9 cut(s) 145, 178, 295, 364, 767, 1289, 1441, 1684, 1700
NlaIV GGNNCC 6 cut(s) 83, 110, 195, 966, 1390, 1552
NmeAIII GCCGAG 3 cut(s) 254, 481, 942
NspI RCATGY 2 cut(s) 178, 1700
PaeI GCATGC 1 cut(s) 1700
PagI TCATGA 2 cut(s) 763, 1285
PceI AGGCCT 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 1121
PdiI GCCGGC 1 cut(s) 1314
PdmI GAANNNNTTC 1 cut(s) 1653
PfeI GAWTC 8 cut(s) 23, 349, 357, 698, 880, 925, 1112, 1803
PfoI TCCNGGA 1 cut(s) 1725
PkrI GCNGC 8 cut(s) 48, 71, 74, 77, 859, 1267, 1318, 1464
PleI GAGTC 2 cut(s) 784, 1600
PpsI GAGTC 2 cut(s) 784, 1600
PpuMI RGGWCCY 1 cut(s) 1550
PshBI ATTAAT 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 1550
Psp6I CCWGG 5 cut(s) 104, 201, 967, 1546, 1725
PspFI CCCAGC 3 cut(s) 117, 239, 992
PspGI CCWGG 5 cut(s) 104, 201, 967, 1546, 1725
PspN4I GGNNCC 6 cut(s) 83, 110, 195, 966, 1390, 1552
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1550
PspPPI RGGWCCY 1 cut(s) 1550
PstNI CAGNNNCTG 2 cut(s) 1184, 1726
RsaI GTAC 2 cut(s) 1333, 1542
RsaNI GTAC 2 cut(s) 1332, 1541
SacII CCGCGG 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 1121
SaqAI TTAA 5 cut(s) 390, 434, 621, 1050, 1791
SatI GCNGC 8 cut(s) 47, 70, 73, 76, 858, 1266, 1317, 1463
Sau3AI GATC 5 cut(s) 1230, 1282, 1288, 1731, 1749
Sau96I GGNCC 7 cut(s) 81, 82, 193, 199, 205, 306, 1550
SchI GAGTC 2 cut(s) 785, 1600
ScrFI CCNGG 7 cut(s) 80, 106, 197, 203, 969, 1548, 1727
SduI GDGCHC 2 cut(s) 85, 1528
SexAI ACCWGGT 1 cut(s) 967
SfaNI GCATC 6 cut(s) 26, 62, 321, 877, 1150, 1236
SfcI CTRYAG 1 cut(s) 1320
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 2 cut(s) 306, 1550
SmlI CTYRAG 3 cut(s) 98, 509, 1529
SmoI CTYRAG 3 cut(s) 98, 509, 1529
SphI GCATGC 1 cut(s) 1700
Sse9I AATT 4 cut(s) 391, 419, 515, 1307
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 6 cut(s) 73, 75, 220, 857, 1463, 1807
SspMI CTAG 3 cut(s) 366, 1515, 1810
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 7 cut(s) 78, 104, 195, 201, 967, 1546, 1725
StyI CCWWGG 1 cut(s) 1392
TaaI ACNGT 1 cut(s) 1336
TaqI TCGA 7 cut(s) 216, 264, 315, 752, 1218, 1235, 1671
TasI AATT 4 cut(s) 391, 419, 515, 1307
TauI GCSGC 4 cut(s) 75, 78, 860, 1465
TfiI GAWTC 8 cut(s) 23, 349, 357, 698, 880, 925, 1112, 1803
Tru1I TTAA 5 cut(s) 390, 434, 621, 1050, 1791
Tru9I TTAA 5 cut(s) 390, 434, 621, 1050, 1791
TseI GCWGC 4 cut(s) 46, 69, 1265, 1316
TspDTI ATGAA 9 cut(s) 158, 349, 752, 780, 1386, 1454, 1689, 1697, 1725
TspGWI ACGGA 1 cut(s) 1151
VneI GTGCAC 1 cut(s) 1524
VpaK11BI GGWCC 2 cut(s) 306, 1550
VspI ATTAAT 1 cut(s) 390
XceI RCATGY 2 cut(s) 178, 1700
XmnI GAANNNNTTC 1 cut(s) 1653
XspI CTAG 3 cut(s) 366, 1515, 1810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.