Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8197916.1

Orthogroup ID

OG0012270

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 616

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8197916.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 616 bp

tggtgctgatgttaaggcagagaagaagaagaagaaaaagaagaaggagaagaagcagaatgggattttggattctgaccctgagaagagccatacggatagggagaatgagaatgtggatgcaaatggtgagaacccagataatgaacaggttactgatggtgatgagataaaactcgatgattatgcgatctcgaacctccagatgcagtttgagaagattgctgctgaagcaggcttggatcatgatcttccaagtgcctgtgaattgccgacagctacagctaatggtactgtctctaagaagagaaagagagtgaagaaagctgatgaagttgtggaggatggcaccaaggcaaagagtggggagaagagtgcaaagaaggtaaagttttccatgaaaaacaacttggtgtggaagccacaaagccctttaccccctcaaaatctaagattgcccccgtctgctacacctagaggaagtgcactcaagcaaggagtacctccaggtcccgtcagggaaatgcctcccccaaccaaaaaagtgaaaagacttgtgaagaagactcggaaagttgtcaaacgcgtgaagaagttgaaatctcgttctccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000791 GO:0000792 GO:0001652 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010563 GO:0010604 GO:0010628 GO:0010921 GO:0010923 GO:0010941 GO:0010942 GO:0016070 GO:0016072 GO:0019219 GO:0019220 GO:0019222 GO:0022613 GO:0030684 GO:0030687 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034260 GO:0034470 GO:0034641 GO:0034660 GO:0035303 GO:0035305 GO:0035821 GO:0042254 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043086 GO:0043087 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043900 GO:0043902 GO:0043903 GO:0043921 GO:0043923 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046782 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0050434 GO:0050789 GO:0050790 GO:0050792 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051252 GO:0051254 GO:0051336 GO:0051346 GO:0051702 GO:0051704 GO:0051707 GO:0051817 GO:0051851 GO:0052312 GO:0052472 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098586 GO:0140110 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nop52

Protein Analysis

204

Amino Acids

22.56

Weight (kDa)

9.89

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20600
fragaria_vesca	FvH4_4g06690
malus_domestica	MD13G1237200.v1.1 MD16G1242600.v1.1
prunus_persica	Prupe.1G069700_v2.0.a1 Prupe.1G069700_v2.0.a1
pyrus_communis	pycom13g21010 pycom16g20340
rosa_chinensis	RchiOBHm_Chr4g0398601
rosa_laevigata	RLG00000009340
rosa_multiflora	Rmu_co8197916.1_g000001 Rmu_sc0000990.1_g000010 Rmu_sc0005217.1_g000016
rosa_roxburghii	Rroxscaffold_5G00343580
rosa_rugosa	Rorug04G0009800
rosa_samantha	Rh4AG087700 Rh4BG084300 Rh4CG095900 Rh4DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	348
AccII	CGCG	1 cut(s)	586
AclWI	GGATC	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	293, 502
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	506
AjuI	GAANNNNNNNTTGG	4 cut(s)	51, 83, 393, 425
AluBI	AGCT	3 cut(s)	279, 285, 327
AluI	AGCT	3 cut(s)	279, 285, 327
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	302
Alw44I	GTGCAC	1 cut(s)	484
AlwI	GGATC	1 cut(s)	250
ApaLI	GTGCAC	1 cut(s)	484
ApeKI	GCWGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	141, 174
AvaII	GGWCC	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	2 cut(s)	153, 339
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	475
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	508
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	2 cut(s)	350, 512
BmrFI	CCNGG	1 cut(s)	508
BmsI	GCATC	2 cut(s)	110, 196
BpiI	GAAGAC	1 cut(s)	570
BpmI	CTGGAG	2 cut(s)	186, 490
BpuEI	CTTGAG	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	125, 350
BseJI	GATNNNNATC	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	586
BshNI	GGYRCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	488
BslFI	GGGAC	1 cut(s)	496
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	190, 242, 248
BspCNI	CTCAG	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	586
BspHI	TCATGA	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	350, 512
BspPI	GGATC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	3 cut(s)	190, 242, 248
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	3 cut(s)	81, 300, 366
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	4 cut(s)	82, 301, 450, 613
BstF5I	GGATG	2 cut(s)	125, 350
BstFNI	CGCG	1 cut(s)	586
BstKTI	GATC	3 cut(s)	193, 245, 251
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	3 cut(s)	190, 242, 248
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNI	CCWGG	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	570
BtsCI	GGATG	2 cut(s)	125, 350
Cac8I	GCNNGC	1 cut(s)	236
CciI	TCATGA	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	292, 501
CviAII	CATG	2 cut(s)	246, 398
CviJI	RGCY	7 cut(s)	91, 238, 279, 285, 327, 422, 430
CviKI_1	RGCY	7 cut(s)	91, 238, 279, 285, 327, 422, 430
CviQI	GTAC	2 cut(s)	292, 501
DdeI	CTNAG	4 cut(s)	82, 301, 450, 613
DpnI	GATC	3 cut(s)	192, 244, 250
DpnII	GATC	3 cut(s)	190, 242, 248
Eam1104I	CTCTTC	3 cut(s)	81, 300, 366
EarI	CTCTTC	3 cut(s)	81, 300, 366
Eco130I	CCWWGG	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	510
Eco57I	CTGAAG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	2 cut(s)	249, 401
FaiI	YATR	4 cut(s)	94, 187, 247, 399
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	2 cut(s)	245, 397
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	2 cut(s)	132, 357
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	475
GluI	GCNGC	1 cut(s)	226
GsuI	CTGGAG	2 cut(s)	186, 490
Hin1II	CATG	2 cut(s)	249, 401
HinfI	GANTC	2 cut(s)	72, 566
HphI	GGTGA	2 cut(s)	141, 174
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	2 cut(s)	77, 571
Hpy188III	TCNNGA	3 cut(s)	194, 203, 246
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	2 cut(s)	38, 377
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	123, 209, 378, 486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	4 cut(s)	82, 301, 450, 613
Hsp92II	CATG	2 cut(s)	249, 401
Kzo9I	GATC	3 cut(s)	190, 242, 248
LguI	GCTCTTC	1 cut(s)	81
LpnPI	CCDG	9 cut(s)	94, 135, 151, 216, 220, 275, 493, 503, 520
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	110, 196
MaeI	CTAG	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	3 cut(s)	192, 244, 250
MboI	GATC	3 cut(s)	190, 242, 248
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	1 cut(s)	267
MluI	ACGCGT	1 cut(s)	584
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	6 cut(s)	210, 335, 451, 471, 514, 538
MseI	TTAA	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	508
MvnI	CGCG	1 cut(s)	586
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	3 cut(s)	190, 242, 248
NlaIII	CATG	2 cut(s)	249, 401
NlaIV	GGNNCC	2 cut(s)	350, 512
PagI	TCATGA	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PpuMI	RGGWCCY	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	350, 512
PspPI	GGNCC	1 cut(s)	510
PspPPI	RGGWCCY	1 cut(s)	510
RsaI	GTAC	2 cut(s)	293, 502
RsaNI	GTAC	2 cut(s)	292, 501
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	13
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	3 cut(s)	190, 242, 248
Sau96I	GGNCC	1 cut(s)	510
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	9 cut(s)	154, 202, 281, 287, 329, 388, 476, 506, 512
SfaNI	GCATC	2 cut(s)	110, 196
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	1 cut(s)	267
SspMI	CTAG	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	178, 195
TasI	AATT	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	13
Tru9I	TTAA	1 cut(s)	13
TseI	GCWGC	1 cut(s)	225
TspDTI	ATGAA	3 cut(s)	160, 346, 414
TspGWI	ACGGA	1 cut(s)	111
VneI	GTGCAC	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	510
XspI	CTAG	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.