RchiOBHm_Chr4g0415451

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
40153123 .. 40153688
566 bp
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UTR
Exon/CDS
Intron
PRQ38571

Sequence Viewer

Length: 192 bp
ATGTTTTATATGAGGCCTCTTGCATGTTTTGGAAATTATCTGTTTTTACAACTTGAAATGGTTTGCGTGGATTGGATTAATGTGTTGGCAATTGATGGGGATGTAAGGAGAGGTTTGTTCCTCCTTGAGCCACCGGTGGTGGGCAGTGTGCACCATGCCCTTGTTTTCTCCCCTTGGTCTCTAGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.18

Weight (kDa)

5.34

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 140
AgeI ACCGGT 1 cut(s) 133
AgsI TTSAA 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 149
AoxI GGCC 1 cut(s) 14
ApaLI GTGCAC 1 cut(s) 149
AseI ATTAAT 1 cut(s) 78
AsiGI ACCGGT 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 153
BshFI GGCC 1 cut(s) 16
BshTI ACCGGT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 183
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 153
BspANI GGCC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 133
CviAII CATG 2 cut(s) 24, 155
CviJI RGCY 3 cut(s) 16, 130, 185
CviKI_1 RGCY 3 cut(s) 16, 130, 185
Eco130I CCWWGG 1 cut(s) 173
Eco147I AGGCCT 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 2 cut(s) 27, 158
FaiI YATR 4 cut(s) 9, 11, 25, 156
FatI CATG 2 cut(s) 23, 154
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 134
Hin1II CATG 2 cut(s) 27, 158
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 23, 151
Hsp92II CATG 2 cut(s) 27, 158
LpnPI CCDG 1 cut(s) 147
MaeI CTAG 1 cut(s) 182
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 2 cut(s) 34, 90
MnlI CCTC 4 cut(s) 6, 27, 104, 131
MseI TTAA 1 cut(s) 78
MspI CCGG 1 cut(s) 134
MunI CAATTG 1 cut(s) 90
NlaIII CATG 2 cut(s) 27, 158
NspI RCATGY 1 cut(s) 27
PceI AGGCCT 1 cut(s) 16
PinAI ACCGGT 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 78
SaqAI TTAA 1 cut(s) 78
SduI GDGCHC 1 cut(s) 153
SetI ASST 1 cut(s) 115
SgeI CNNG 9 cut(s) 32, 36, 65, 79, 137, 146, 167, 173, 186
SgrAI CRCCGGYG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 34, 90
SseBI AGGCCT 1 cut(s) 16
SspMI CTAG 1 cut(s) 182
StuI AGGCCT 1 cut(s) 16
StyI CCWWGG 1 cut(s) 173
TasI AATT 2 cut(s) 34, 90
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 151
TspRI CASTG 1 cut(s) 151
VneI GTGCAC 1 cut(s) 149
VspI ATTAAT 1 cut(s) 78
XceI RCATGY 1 cut(s) 27
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.