RLG00000002424

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008899
Physical Location & Seq
Reverse (-)
33884486 .. 33889305
4820 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002424

Sequence Viewer

Length: 672 bp
ATGAAGATCAATGAGGCTCAAGAAGAAGTTCCAACTCAAGCTAGTAGGGCTCCAACCATTGACCTTAGTGGTAAGGGGAAGCAGAAAATGCAGATGGAGGAACTAGTTGAAGAAGATGACAGTGAAGATGATGGGTGGTTTCAAGAAGAGCCTGAAAATGAAGTTGCAAATGCTGGGTGGTTTAAAGCTTCTGATGATGATGATTACAACTCTGCAAAAGATGATGATGAGTATGCAGGGTATGGAGTGGATGATGATTTTCTCTTTAACTGGTTAACAGAATCTGAGGTTGTGTCTAATCCAGGGGAGGGCTCTTCTGTAGCAGAGGATTCAGATGAAGAAAGGCTAGGGCCAGAGTATAACTCTGATGAAGATGGAGGTAAAGACAGATTCCCTAAGTTTAATCCCAAGGCCAAGCGTAGCAAAAAGCAGCCGAAGACCAAAAATGAGCTTAGAGAATGGGCTAAGAGAAGAGCTGAACAACAGAAGAAAAAGAGGGATGAAAAGAAGGCAGCAGCAATGGCATCAAAAGCATCAACAACTACAGCTGCTTCAAGCAAGGGCAGACCTCCAATAGCTCCTTCAAGCAAGGGAAGACCAGCTGCTTCTTCACAGACTTCATTAAGGTCATCTGCAAGGATCCGGGAAAATGCAAACAATGCTGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.72

Weight (kDa)

4.87

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 634, 647
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 4 cut(s) 110, 143, 555, 585
AhlI ACTAGT 1 cut(s) 103
AjnI CCWGG 1 cut(s) 301
AjuI GAANNNNNNNTTGG 2 cut(s) 565, 597
AluBI AGCT 7 cut(s) 41, 188, 451, 476, 548, 578, 602
AluI AGCT 7 cut(s) 41, 188, 451, 476, 548, 578, 602
AlwI GGATC 2 cut(s) 634, 647
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 2 cut(s) 350, 411
ApeKI GCWGC 5 cut(s) 430, 512, 515, 548, 602
Asp700I GAANNNNTTC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 644
BamHI GGATCC 1 cut(s) 639
BanII GRGCYC 2 cut(s) 52, 314
BbsI GAAGAC 2 cut(s) 443, 601
BbvI GCAGC 5 cut(s) 442, 524, 527, 535, 589
BccI CCATC 3 cut(s) 88, 125, 368
BciT130I CCWGG 1 cut(s) 303
BcnI CCSGG 1 cut(s) 644
BcuI ACTAGT 1 cut(s) 103
BfaI CTAG 3 cut(s) 42, 104, 347
BfmI CTRYAG 2 cut(s) 318, 543
BisI GCNGC 5 cut(s) 431, 513, 516, 549, 603
BlsI GCNGC 5 cut(s) 432, 514, 517, 550, 604
Bme1390I CCNGG 2 cut(s) 303, 644
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 51, 641
BmrFI CCNGG 2 cut(s) 303, 644
BmsI GCATC 2 cut(s) 533, 542
BpiI GAAGAC 2 cut(s) 443, 601
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpuEI CTTGAG 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 644
BsaJI CCNNGG 2 cut(s) 302, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 302, 408
BseGI GGATG 2 cut(s) 256, 505
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 5 cut(s) 442, 524, 527, 535, 589
BseYI CCCAGC 1 cut(s) 173
BshFI GGCC 2 cut(s) 352, 413
BsiSI CCGG 1 cut(s) 643
BslI CCNNNNNNNGG 1 cut(s) 308
BsnI GGCC 2 cut(s) 352, 413
Bsp1286I GDGCHC 2 cut(s) 52, 314
Bsp143I GATC 2 cut(s) 6, 639
BspANI GGCC 2 cut(s) 352, 413
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 51, 641
BspPI GGATC 2 cut(s) 634, 647
BspQI GCTCTTC 3 cut(s) 141, 319, 466
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 302, 408
BssMI GATC 2 cut(s) 6, 639
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 3 cut(s) 141, 319, 466
BstAPI GCANNNNNTGC 2 cut(s) 88, 659
BstDEI CTNAG 5 cut(s) 65, 285, 396, 452, 465
BstF5I GGATG 2 cut(s) 256, 505
BstKTI GATC 2 cut(s) 9, 642
BstMBI GATC 2 cut(s) 6, 639
BstMWI GCNNNNNNNGC 5 cut(s) 47, 88, 521, 530, 659
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 301, 642
BstSFI CTRYAG 2 cut(s) 318, 543
BstV1I GCAGC 5 cut(s) 442, 524, 527, 535, 589
BstV2I GAAGAC 2 cut(s) 443, 601
BstX2I RGATCY 1 cut(s) 639
BstYI RGATCY 1 cut(s) 639
BsuRI GGCC 2 cut(s) 352, 413
BtsCI GGATG 2 cut(s) 256, 505
BtsIMutI CAGTG 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 350
DdeI CTNAG 5 cut(s) 65, 285, 396, 452, 465
DpnI GATC 2 cut(s) 8, 641
DpnII GATC 2 cut(s) 6, 639
DraI TTTAAA 1 cut(s) 184
Eam1104I CTCTTC 3 cut(s) 141, 319, 466
EarI CTCTTC 3 cut(s) 141, 319, 466
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 2 cut(s) 52, 314
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 52, 314
ErhI CCWWGG 1 cut(s) 408
FaiI YATR 3 cut(s) 234, 243, 360
Fnu4HI GCNGC 5 cut(s) 431, 513, 516, 549, 603
FokI GGATG 2 cut(s) 263, 512
FriOI GRGCYC 2 cut(s) 52, 314
Fsp4HI GCNGC 5 cut(s) 431, 513, 516, 549, 603
FspBI CTAG 3 cut(s) 42, 104, 347
GluI GCNGC 5 cut(s) 431, 513, 516, 549, 603
GsaI CCCAGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 352, 413
HapII CCGG 1 cut(s) 643
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 3 cut(s) 281, 329, 390
HpaI GTTAAC 1 cut(s) 276
HpaII CCGG 1 cut(s) 643
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 4 cut(s) 193, 286, 334, 367
Hpy188III TCNNGA 2 cut(s) 20, 143
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 2 cut(s) 502, 591
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 6 cut(s) 91, 167, 215, 236, 635, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 88, 521, 530, 659
HpyF3I CTNAG 5 cut(s) 65, 285, 396, 452, 465
KspAI GTTAAC 1 cut(s) 276
Kzo9I GATC 2 cut(s) 6, 639
LguI GCTCTTC 3 cut(s) 141, 319, 466
LmnI GCTCC 2 cut(s) 55, 583
Lsp1109I GCAGC 5 cut(s) 442, 524, 527, 535, 589
LweI GCATC 2 cut(s) 533, 542
MaeI CTAG 3 cut(s) 42, 104, 347
MalI GATC 2 cut(s) 8, 641
MboI GATC 2 cut(s) 6, 639
MflI RGATCY 1 cut(s) 639
MhlI GDGCHC 2 cut(s) 52, 314
MmeI TCCRAC 2 cut(s) 56, 77
MnlI CCTC 8 cut(s) 7, 91, 280, 301, 319, 371, 489, 579
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 5 cut(s) 183, 267, 275, 402, 623
MspA1I CMGCKG 2 cut(s) 548, 602
MspI CCGG 1 cut(s) 643
MspR9I CCNGG 2 cut(s) 303, 644
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 5 cut(s) 47, 88, 521, 530, 659
NciI CCSGG 1 cut(s) 644
NdeII GATC 2 cut(s) 6, 639
NlaIV GGNNCC 2 cut(s) 51, 641
PciSI GCTCTTC 3 cut(s) 141, 319, 466
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 3 cut(s) 281, 329, 390
PfoI TCCNGGA 1 cut(s) 642
PkrI GCNGC 5 cut(s) 432, 514, 517, 550, 604
Psp6I CCWGG 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 51, 641
PspPI GGNCC 1 cut(s) 350
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 639
PvuII CAGCTG 2 cut(s) 548, 602
SapI GCTCTTC 3 cut(s) 141, 319, 466
SaqAI TTAA 5 cut(s) 183, 267, 275, 402, 623
SatI GCNGC 5 cut(s) 431, 513, 516, 549, 603
Sau3AI GATC 2 cut(s) 6, 639
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 303, 644
SduI GDGCHC 2 cut(s) 52, 314
SfaNI GCATC 2 cut(s) 533, 542
SfcI CTRYAG 2 cut(s) 318, 543
SmlI CTYRAG 2 cut(s) 18, 36
SmoI CTYRAG 2 cut(s) 18, 36
SpeI ACTAGT 1 cut(s) 103
SspMI CTAG 3 cut(s) 42, 104, 347
StyD4I CCNGG 2 cut(s) 301, 642
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 122
TfiI GAWTC 3 cut(s) 281, 329, 390
Tru1I TTAA 5 cut(s) 183, 267, 275, 402, 623
Tru9I TTAA 5 cut(s) 183, 267, 275, 402, 623
TscAI CASTG 1 cut(s) 127
TseI GCWGC 5 cut(s) 430, 512, 515, 548, 602
TspDTI ATGAA 6 cut(s) 17, 174, 351, 384, 516, 609
TspRI CASTG 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 3 cut(s) 42, 104, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.