Rroxscaffold_1G00021660

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
26631191 .. 26632893
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021660.1

Sequence Viewer

Length: 222 bp
ATGGCTGAACCCGATGACTGGATACCTCGATTGGAAAATGAAGGCCAAGAAATTTCAAACTACGAAGATAGTCAAGATGATGACTATAACCTTGTTGCTGCCGATGATGATGTTGCAGCCTATGGAGTCGATGATGACTTCTTGTTTGATCGGTTAACGGACCCGAGGGAGGTGAAAGGGTTTCGGAGGAGGGATGTGGTACTGCTTCGTGGGGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.5

Weight (kDa)

4.05

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 18, 169
AgsI TTSAA 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 98, 116
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 85, 128
BciVI GTATCC 1 cut(s) 15
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 2 cut(s) 99, 117
BlsI GCNGC 2 cut(s) 100, 118
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 169
Bse1I ACTGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 18, 169
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 85, 128
BshFI GGCC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 18, 169
BsnI GGCC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 163
Bsp143I GATC 1 cut(s) 148
BspANI GGCC 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 85, 128
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 200
CviJI RGCY 3 cut(s) 5, 45, 119
CviKI_1 RGCY 3 cut(s) 5, 45, 119
CviQI GTAC 1 cut(s) 200
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 163
FaiI YATR 2 cut(s) 87, 123
Fnu4HI GCNGC 2 cut(s) 99, 117
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 99, 117
GluI GCNGC 2 cut(s) 99, 117
HaeIII GGCC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 1 cut(s) 126
HpaI GTTAAC 1 cut(s) 156
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 116
KspAI GTTAAC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 85, 128
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 77
MluCI AATT 1 cut(s) 51
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 5 cut(s) 36, 159, 163, 180, 183
MseI TTAA 1 cut(s) 155
NdeII GATC 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 162
PkrI GCNGC 2 cut(s) 100, 118
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 160
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 2 cut(s) 99, 117
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 135
SetI ASST 3 cut(s) 28, 93, 174
SgeI CNNG 9 cut(s) 23, 31, 39, 59, 86, 104, 154, 175, 177
SinI GGWCC 1 cut(s) 160
Sse9I AATT 1 cut(s) 51
TaqI TCGA 2 cut(s) 28, 129
TasI AATT 1 cut(s) 51
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseI GCWGC 2 cut(s) 98, 116
TspDTI ATGAA 1 cut(s) 54
TspGWI ACGGA 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.