RLG00000002665

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008899
Physical Location & Seq
Forward (+)
37735371 .. 37738236
2866 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002665

Sequence Viewer

Length: 507 bp
ATGCAGATGGAGGAACTAGTTGAAGAAGATGACAGGTGGTTTCAAGAAGAGCCAGAAAATGAAGTTGCAAATGACGAGTGGTTTCAAGAAGAGCCTGAAAATGAAATTGCAGATGATGGATGGTTTGAAGCTTCTAATGATGATGATTCAAATGATGATGATTACAACCCTGCAAAAGATGATGATGAGTATGCAGGGTATGGAGTGGATGATGTTTTTCTCTTTAACTGGTTAACAGAATCTGAGGCCAAGGGTAGCAAAAAGCAGCCGAAGACCAAAAATGAGCTTAGAGAATCGGCTAAGAGAAGAGCTAAACAACAGAAGAAAAAGAGGGATGAAAAGAAGGTAGCAGCAAGGGCATCAAAAGCATCAACAACTACAGCTGCTTCAAGCAAGGGCAGACCTCCAAAAGCTCCTTCAAGCAAGGGAAGACCAGCTGCTTCTTCACAGGCTTCATCAAGGTCATCTGCAAGGATCCGGAAAAATACAAACAATGCTGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.03

Weight (kDa)

4.87

Isoelectric Point (pI)

62.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 477
AclWI GGATC 2 cut(s) 469, 482
AgsI TTSAA 7 cut(s) 23, 44, 86, 128, 150, 390, 420
AhlI ACTAGT 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 400, 432
AluBI AGCT 6 cut(s) 131, 286, 311, 383, 413, 437
AluI AGCT 6 cut(s) 131, 286, 311, 383, 413, 437
AlwI GGATC 2 cut(s) 469, 482
AlwNI CAGNNNCTG 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 477
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 4 cut(s) 265, 350, 383, 437
BamHI GGATCC 1 cut(s) 474
BbsI GAAGAC 2 cut(s) 278, 436
BbvI GCAGC 4 cut(s) 277, 362, 370, 424
BccI CCATC 2 cut(s) 110, 114
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 4 cut(s) 266, 351, 384, 438
BlsI GCNGC 4 cut(s) 267, 352, 385, 439
BmiI GGNNCC 1 cut(s) 476
BmsI GCATC 2 cut(s) 368, 377
BpiI GAAGAC 2 cut(s) 278, 436
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 477
Bse1I ACTGG 1 cut(s) 233
BseAI TCCGGA 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 3 cut(s) 125, 214, 340
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 4 cut(s) 277, 362, 370, 424
BshFI GGCC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 478
BsnI GGCC 1 cut(s) 248
Bsp13I TCCGGA 1 cut(s) 477
Bsp143I GATC 1 cut(s) 474
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 235
BspEI TCCGGA 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 476
BspPI GGATC 2 cut(s) 469, 482
BspQI GCTCTTC 3 cut(s) 42, 84, 301
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 249
Bst6I CTCTTC 3 cut(s) 42, 84, 301
BstDEI CTNAG 3 cut(s) 243, 287, 300
BstF5I GGATG 3 cut(s) 125, 214, 340
BstKTI GATC 1 cut(s) 477
BstMBI GATC 1 cut(s) 474
BstMWI GCNNNNNNNGC 2 cut(s) 356, 365
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 4 cut(s) 277, 362, 370, 424
BstV2I GAAGAC 2 cut(s) 278, 436
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 3 cut(s) 125, 214, 340
CaiI CAGNNNCTG 1 cut(s) 242
DdeI CTNAG 3 cut(s) 243, 287, 300
DpnI GATC 1 cut(s) 476
DpnII GATC 1 cut(s) 474
Eam1104I CTCTTC 3 cut(s) 42, 84, 301
EarI CTCTTC 3 cut(s) 42, 84, 301
Eco130I CCWWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaiI YATR 2 cut(s) 192, 201
Fnu4HI GCNGC 4 cut(s) 266, 351, 384, 438
FokI GGATG 3 cut(s) 132, 221, 347
Fsp4HI GCNGC 4 cut(s) 266, 351, 384, 438
FspBI CTAG 1 cut(s) 17
GluI GCNGC 4 cut(s) 266, 351, 384, 438
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 478
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 3 cut(s) 146, 239, 293
HpaI GTTAAC 1 cut(s) 234
HpaII CCGG 1 cut(s) 478
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 3 cut(s) 44, 86, 478
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 2 cut(s) 337, 426
HpyCH4V TGCA 6 cut(s) 4, 68, 110, 173, 194, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 365
HpyF3I CTNAG 3 cut(s) 243, 287, 300
Kpn2I TCCGGA 1 cut(s) 477
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 474
LguI GCTCTTC 3 cut(s) 42, 84, 301
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 9 cut(s) 19, 66, 108, 180, 183, 214, 434, 447, 491
Lsp1109I GCAGC 4 cut(s) 277, 362, 370, 424
LweI GCATC 2 cut(s) 368, 377
MaeI CTAG 1 cut(s) 17
MalI GATC 1 cut(s) 476
MboI GATC 1 cut(s) 474
MboII GAAGA 9 cut(s) 35, 38, 59, 101, 283, 318, 334, 435, 441
MflI RGATCY 1 cut(s) 474
MluCI AATT 1 cut(s) 105
MnlI CCTC 4 cut(s) 4, 238, 324, 414
MroI TCCGGA 1 cut(s) 477
MseI TTAA 2 cut(s) 225, 233
MspA1I CMGCKG 2 cut(s) 383, 437
MspI CCGG 1 cut(s) 478
MwoI GCNNNNNNNGC 2 cut(s) 356, 365
NdeII GATC 1 cut(s) 474
NlaIV GGNNCC 1 cut(s) 476
PciSI GCTCTTC 3 cut(s) 42, 84, 301
PfeI GAWTC 3 cut(s) 146, 239, 293
PkrI GCNGC 4 cut(s) 267, 352, 385, 439
PspN4I GGNNCC 1 cut(s) 476
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 474
PvuII CAGCTG 2 cut(s) 383, 437
SapI GCTCTTC 3 cut(s) 42, 84, 301
SaqAI TTAA 2 cut(s) 225, 233
SatI GCNGC 4 cut(s) 266, 351, 384, 438
Sau3AI GATC 1 cut(s) 474
SfaNI GCATC 2 cut(s) 368, 377
SfcI CTRYAG 1 cut(s) 378
SpeI ACTAGT 1 cut(s) 16
Sse9I AATT 1 cut(s) 105
SspMI CTAG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 249
TasI AATT 1 cut(s) 105
TfiI GAWTC 3 cut(s) 146, 239, 293
Tru1I TTAA 2 cut(s) 225, 233
Tru9I TTAA 2 cut(s) 225, 233
TseI GCWGC 4 cut(s) 265, 350, 383, 437
TspDTI ATGAA 4 cut(s) 75, 117, 351, 444
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.