Rroxscaffold_5G00342910

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
12099431 .. 12101821
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342910.1

Sequence Viewer

Length: 228 bp
ATGTTTTATATGAGGCCTCTTGCATGTTTTGGAAATTATCAGTTTTTACAACTTGAAATGGTTTGCGTGGATTGGATTGATGTGTTGGCAATTGATGGGGATGTAAGGAGAGGTCAGTTCCTCCTTGAGCCACCGGTGGTGGGCAGTGTGCACCATGCCCTTGATTATTGTTATCTCCCCTTTGTCTCTAGCCTTGTGATTATTGAATTCCGGAAAGTGAATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.66

Weight (kDa)

5.0

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 210
AcsI RAATTY 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 140
AgeI ACCGGT 1 cut(s) 133
AgsI TTSAA 2 cut(s) 56, 206
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 190
Alw44I GTGCAC 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 210
AoxI GGCC 1 cut(s) 14
ApaLI GTGCAC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 206
AsiGI ACCGGT 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 2 cut(s) 189, 226
BpuEI CTTGAG 1 cut(s) 146
BsaWI WCCGGW 2 cut(s) 133, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 133
BseAI TCCGGA 1 cut(s) 210
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 153
BshFI GGCC 1 cut(s) 16
BshTI ACCGGT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 134, 211
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 210
BspANI GGCC 1 cut(s) 16
BspEI TCCGGA 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BstF5I GGATG 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 133
CviAII CATG 2 cut(s) 24, 155
CviJI RGCY 4 cut(s) 16, 130, 192, 225
CviKI_1 RGCY 4 cut(s) 16, 130, 192, 225
Eco147I AGGCCT 1 cut(s) 16
EcoRI GAATTC 1 cut(s) 206
FaeI CATG 2 cut(s) 27, 158
FaiI YATR 4 cut(s) 9, 11, 25, 156
FatI CATG 2 cut(s) 23, 154
FokI GGATG 1 cut(s) 113
FspBI CTAG 2 cut(s) 189, 226
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 134, 211
Hin1II CATG 2 cut(s) 27, 158
HpaII CCGG 2 cut(s) 134, 211
Hpy166II GTNNAC 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 23, 151
Hsp92II CATG 2 cut(s) 27, 158
Kpn2I TCCGGA 1 cut(s) 210
LpnPI CCDG 2 cut(s) 147, 224
MaeI CTAG 2 cut(s) 189, 226
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 34, 90, 206
MnlI CCTC 4 cut(s) 6, 27, 104, 131
MroI TCCGGA 1 cut(s) 210
MspI CCGG 2 cut(s) 134, 211
MunI CAATTG 1 cut(s) 90
NlaIII CATG 2 cut(s) 27, 158
NspI RCATGY 1 cut(s) 27
PceI AGGCCT 1 cut(s) 16
PinAI ACCGGT 1 cut(s) 133
SduI GDGCHC 1 cut(s) 153
SetI ASST 1 cut(s) 115
SgrAI CRCCGGYG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 34, 90, 206
SseBI AGGCCT 1 cut(s) 16
SspMI CTAG 2 cut(s) 189, 226
StuI AGGCCT 1 cut(s) 16
TasI AATT 3 cut(s) 34, 90, 206
TscAI CASTG 1 cut(s) 151
TspRI CASTG 1 cut(s) 151
VneI GTGCAC 1 cut(s) 149
XapI RAATTY 1 cut(s) 206
XceI RCATGY 1 cut(s) 27
XspI CTAG 2 cut(s) 189, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.