Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008899

Physical Location & Seq

Genomic Coordinates Forward (+)

10251810 .. 10255650

Gene Structure 3841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG130100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCTGTTGGAGGATGCAGCATTGGAGTATGGGTACAAAAATGATGGTCCGATATTGCTTCCTTGCCATGTGGATCTGTTCTACAATGTTATGGCAGAGATTGAGACCAATGATATCGATGAGGATAGGATCAGTGCTCCCAGTAATTGTTCTCCGATAATCTTCAGTCCAGCTCGTCGTAGAAATTGTGCCAGCAACAGAGGTTACGGTGGTGCTTATAGGATTGAGGAGTTGCCTCCATCACCTAGAGCTGAGGAGAATGAGAAAGCAAACACAGTTACAACTCTAACAGTGGGGAAGAGCAGAAGGTTTAAAGTCTGTACAAACAGGAAGAAGGTAAAGGAAATAGGAGTGAAGATTAGTGAGTCTGAAGAAGTTCCAACTCAGGCTAGCAGAGCTCTAACATGTGATCTAACTGACAAGGGAAAGAAGAAGGTTGAGTTTGAGGATACAGTGGATGATTACTTCAGTGAGGATGATGGTTTCATTCAAGAAAAGGAGGAAGATGTTCAGTTTGAGGAAGCTAGTTCTGGAGATGAGGAGAATGAGGAAGATGATGGTTCTGATGATGATGATGATTACAACCCTGCCACATATGATGATGAGTATGCAGCCTATGGGGTAGATGATAACTTTTTATTTGAAACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

217

Amino Acids

24.41

Weight (kDa)

4.2

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008899)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327181 RchiOBHm_Chr2g0111241 RchiOBHm_Chr2g0159241 RchiOBHm_Chr3g0475201 RchiOBHm_Chr4g0415451 RchiOBHm_Chr4g0423091 RchiOBHm_Chr6g0301911 RchiOBHm_Chr7g0211901
rosa_laevigata	RLG00000002424 RLG00000002665 RLG00000030096
rosa_multiflora	Rmu_sc0001188.1_g000020 Rmu_sc0008092.1_g000009
rosa_roxburghii	Rroxscaffold_159G00433070 Rroxscaffold_1G00021660 Rroxscaffold_2G00080380 Rroxscaffold_3G00249060 Rroxscaffold_4G00310440 Rroxscaffold_4G00325180 Rroxscaffold_5G00342910 Rroxscaffold_5G00385840 Rroxscaffold_7G00195250
rosa_samantha	Rh7CG130100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	81, 137
AcuI	CTGAAG	3 cut(s)	148, 390, 451
AfaI	GTAC	2 cut(s)	35, 322
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	491, 644
AluBI	AGCT	4 cut(s)	173, 251, 398, 524
AluI	AGCT	4 cut(s)	173, 251, 398, 524
Alw21I	GWGCWC	2 cut(s)	139, 400
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	81, 137
ApeKI	GCWGC	2 cut(s)	17, 611
Asp700I	GAANNNNTTC	2 cut(s)	375, 507
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	234
AsuNHI	GCTAGC	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	400
Bbv12I	GWGCWC	2 cut(s)	139, 400
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	29, 623
BccI	CCATC	4 cut(s)	38, 247, 473, 551
BciVI	GTATCC	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	3 cut(s)	246, 390, 525
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	2 cut(s)	18, 612
BlsI	GCNGC	2 cut(s)	19, 613
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	4
BmtI	GCTAGC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bse1I	ACTGG	2 cut(s)	141, 652
BseCI	ATCGAT	1 cut(s)	117
BseGI	GGATG	3 cut(s)	19, 463, 481
BseMII	CTCAG	2 cut(s)	243, 398
BseNI	ACTGG	2 cut(s)	141, 652
BseRI	GAGGAG	3 cut(s)	242, 269, 554
BseXI	GCAGC	2 cut(s)	29, 623
BshVI	ATCGAT	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	139, 400
BsmAI	GTCTC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	139, 400
Bsp1407I	TGTACA	1 cut(s)	320
Bsp143I	GATC	3 cut(s)	73, 129, 409
BspCNI	CTCAG	2 cut(s)	244, 397
BspDI	ATCGAT	1 cut(s)	117
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	81, 137
BspQI	GCTCTTC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	141, 652
BssMI	GATC	3 cut(s)	73, 129, 409
Bst4CI	ACNGT	4 cut(s)	209, 277, 292, 454
Bst6I	CTCTTC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	193, 391
BstDEI	CTNAG	2 cut(s)	252, 384
BstF5I	GGATG	3 cut(s)	19, 463, 481
BstKTI	GATC	3 cut(s)	76, 132, 412
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	73, 129, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	29, 623
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	442
BsuTUI	ATCGAT	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	19, 463, 481
BtsIMutI	CAGTG	4 cut(s)	139, 297, 459, 475
Cac8I	GCNNGC	2 cut(s)	193, 391
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	34, 321
CviAII	CATG	2 cut(s)	68, 405
CviJI	RGCY	6 cut(s)	173, 251, 389, 398, 524, 614
CviKI_1	RGCY	6 cut(s)	173, 251, 389, 398, 524, 614
CviQI	GTAC	2 cut(s)	34, 321
DdeI	CTNAG	2 cut(s)	252, 384
DpnI	GATC	3 cut(s)	75, 131, 411
DpnII	GATC	3 cut(s)	73, 129, 409
DraI	TTTAAA	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	3 cut(s)	148, 390, 451
EcoICRI	GAGCTC	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	2 cut(s)	71, 408
FaiI	YATR	9 cut(s)	30, 69, 92, 219, 406, 595, 597, 609, 618
FatI	CATG	2 cut(s)	67, 404
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	18, 612
FokI	GGATG	3 cut(s)	26, 470, 488
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	2 cut(s)	18, 612
FspBI	CTAG	3 cut(s)	246, 390, 525
GluI	GCNGC	2 cut(s)	18, 612
GsuI	CTGGAG	1 cut(s)	552
Hin1II	CATG	2 cut(s)	71, 408
HinfI	GANTC	1 cut(s)	365
HphI	GGTGA	1 cut(s)	234
Hpy188I	TCNGA	4 cut(s)	51, 156, 370, 565
Hpy188III	TCNNGA	2 cut(s)	491, 531
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	300, 328, 427
HpyCH4III	ACNGT	4 cut(s)	209, 277, 292, 454
HpyCH4V	TGCA	2 cut(s)	17, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	252, 384
Hsp92II	CATG	2 cut(s)	71, 408
Kzo9I	GATC	3 cut(s)	73, 129, 409
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	8 cut(s)	154, 183, 205, 313, 371, 516, 600, 633
Lsp1109I	GCAGC	2 cut(s)	29, 623
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	3 cut(s)	246, 390, 525
MaeIII	GTNAC	2 cut(s)	203, 277
MalI	GATC	3 cut(s)	75, 131, 411
MboI	GATC	3 cut(s)	73, 129, 409
MboII	GAAGA	8 cut(s)	154, 310, 343, 367, 383, 442, 515, 563
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	139, 400
MluCI	AATT	2 cut(s)	145, 184
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	404
MroXI	GAANNNNTTC	2 cut(s)	375, 507
MseI	TTAA	2 cut(s)	312, 652
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	3 cut(s)	73, 129, 409
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	2 cut(s)	71, 408
NspI	RCATGY	1 cut(s)	408
PciI	ACATGT	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	293
PdmI	GAANNNNTTC	2 cut(s)	375, 507
PkrI	GCNGC	2 cut(s)	19, 613
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PscI	ACATGT	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	2 cut(s)	35, 322
RsaNI	GTAC	2 cut(s)	34, 321
SacI	GAGCTC	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	312, 652
SatI	GCNGC	2 cut(s)	18, 612
Sau3AI	GATC	3 cut(s)	73, 129, 409
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	139, 400
SetI	ASST	9 cut(s)	175, 205, 247, 253, 311, 339, 400, 438, 526
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	2 cut(s)	145, 184
SspMI	CTAG	3 cut(s)	246, 390, 525
SstI	GAGCTC	1 cut(s)	400
TaaI	ACNGT	4 cut(s)	209, 277, 292, 454
TaqI	TCGA	1 cut(s)	117
TasI	AATT	2 cut(s)	145, 184
TatI	WGTACW	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	312, 652
Tru9I	TTAA	2 cut(s)	312, 652
TscAI	CASTG	4 cut(s)	139, 297, 459, 475
TseI	GCWGC	2 cut(s)	17, 611
TspDTI	ATGAA	1 cut(s)	475
TspRI	CASTG	4 cut(s)	139, 297, 459, 475
VpaK11BI	GGWCC	1 cut(s)	47
XceI	RCATGY	1 cut(s)	408
XmnI	GAANNNNTTC	2 cut(s)	375, 507
XspI	CTAG	3 cut(s)	246, 390, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.