Rroxscaffold_4G00325180

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
56945356 .. 56947053
1698 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00325180.1

Sequence Viewer

Length: 198 bp
ATGTTTTATATGAGGCCTCTTGCATGTTTTGGAAATTATCTGTTTTTACAACTTGAAATGGTTTGCGTGGATTGGATTGATATGTTGACAATTGATGGGGATGTAAGGAGAGGTCAGTTCCTCCTTGAGCCACCGATGGTGGGCAGTGTGCACCATGCCCTTGTTATTGAATACTCCCCTTTGTCTCTAGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.48

Weight (kDa)

4.63

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 56, 170
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 149
AoxI GGCC 1 cut(s) 14
ApaLI GTGCAC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 2 cut(s) 89, 130
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 153
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 153
BspANI GGCC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
CviAII CATG 2 cut(s) 24, 155
CviJI RGCY 3 cut(s) 16, 130, 191
CviKI_1 RGCY 3 cut(s) 16, 130, 191
Eco147I AGGCCT 1 cut(s) 16
FaeI CATG 2 cut(s) 27, 158
FaiI YATR 5 cut(s) 9, 11, 25, 83, 156
FatI CATG 2 cut(s) 23, 154
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 188
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 2 cut(s) 27, 158
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
Hpy166II GTNNAC 2 cut(s) 87, 151
Hpy8I GTNNAC 2 cut(s) 87, 151
HpyCH4V TGCA 2 cut(s) 23, 151
Hsp92II CATG 2 cut(s) 27, 158
MaeI CTAG 1 cut(s) 188
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 2 cut(s) 34, 90
MnlI CCTC 4 cut(s) 6, 27, 104, 131
MunI CAATTG 1 cut(s) 90
NlaIII CATG 2 cut(s) 27, 158
NspI RCATGY 1 cut(s) 27
PceI AGGCCT 1 cut(s) 16
SduI GDGCHC 1 cut(s) 153
SetI ASST 1 cut(s) 115
SgeI CNNG 7 cut(s) 32, 36, 65, 79, 137, 167, 173
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 34, 90
SseBI AGGCCT 1 cut(s) 16
SspMI CTAG 1 cut(s) 188
StuI AGGCCT 1 cut(s) 16
TasI AATT 2 cut(s) 34, 90
TscAI CASTG 1 cut(s) 151
TspRI CASTG 1 cut(s) 151
VneI GTGCAC 1 cut(s) 149
XceI RCATGY 1 cut(s) 27
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.