Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001188.1

Orthogroup ID

OG0008899

Physical Location & Seq

Genomic Coordinates Reverse (-)

79108 .. 80410

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001188.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggtttgcgtggattggtttgatgtgttggcaattgatggggatgtaaagagaggtcagttcctccttgagccaccggtggtgggcagtgtgcaccatgcccttgttatctcccctttgtctctagccttatttcttgctttccaacctaaaggccttgtctctttgaggaattctaggcccaaaacacttactcaaagtgtcgcgggtgtagggttccttagggaggcggcgctgtgccatttcaaagttctgtttgcaattgagatagataaggcttatccacgtgatttctttcaaaaagggcaagtgagggtgttgctcaaaaaggaagatggaactccatataatccagccattactactaggaaacagctgatgcttcgagttgccgaggtagttcctagacatcctggtaggaccaagaagcaggagccagcatccagatctactgggccttccaaatctgggaagcatggaaagaaaaagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005786 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006617 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0042886 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP19

Protein Analysis

164

Amino Acids

18.21

Weight (kDa)

10.29

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008899)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327181 RchiOBHm_Chr2g0111241 RchiOBHm_Chr2g0159241 RchiOBHm_Chr3g0475201 RchiOBHm_Chr4g0415451 RchiOBHm_Chr4g0423091 RchiOBHm_Chr6g0301911 RchiOBHm_Chr7g0211901
rosa_laevigata	RLG00000002424 RLG00000002665 RLG00000030096
rosa_multiflora	Rmu_sc0001188.1_g000020 Rmu_sc0008092.1_g000009
rosa_roxburghii	Rroxscaffold_159G00433070 Rroxscaffold_1G00021660 Rroxscaffold_2G00080380 Rroxscaffold_3G00249060 Rroxscaffold_4G00310440 Rroxscaffold_4G00325180 Rroxscaffold_5G00342910 Rroxscaffold_5G00385840 Rroxscaffold_7G00195250
rosa_samantha	Rh7CG130100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	206
AciI	CCGC	2 cut(s)	206, 230
AcsI	RAATTY	1 cut(s)	172
AcvI	CACGTG	1 cut(s)	287
AfiI	CCNNNNNNNGG	3 cut(s)	83, 226, 468
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	247, 299
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	126, 166
Alw44I	GTGCAC	1 cut(s)	92
AoxI	GGCC	3 cut(s)	154, 179, 455
ApaLI	GTGCAC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	172
AsiGI	ACCGGT	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	3 cut(s)	180, 420, 455
AvaII	GGWCC	1 cut(s)	420
AxyI	CCTNAGG	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	96
BbrPI	CACGTG	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	2 cut(s)	32, 329
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	126, 166
BfaI	CTAG	4 cut(s)	125, 177, 366, 405
BfoI	RGCGCY	1 cut(s)	236
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	420
BmgT120I	GGNCC	3 cut(s)	180, 420, 455
BmiI	GGNNCC	2 cut(s)	218, 435
BmrFI	CCNGG	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	369, 449
BmuI	ACTGGG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 226, 468
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	457
Bse21I	CCTNAGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	3 cut(s)	49, 409, 440
BseLI	CCNNNNNNNGG	3 cut(s)	83, 226, 468
BseNI	ACTGG	1 cut(s)	457
BseSI	GKGCMC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	3 cut(s)	156, 181, 457
BshTI	ACCGGT	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	3 cut(s)	83, 226, 468
BsmAI	GTCTC	2 cut(s)	126, 166
BsnI	GGCC	3 cut(s)	156, 181, 457
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	446
BspACI	CCGC	2 cut(s)	206, 230
BspANI	GGCC	3 cut(s)	156, 181, 457
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	218, 435
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	457
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	221
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	3 cut(s)	49, 409, 440
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	449
BstMAI	GTCTC	2 cut(s)	126, 166
BstMBI	GATC	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
Bsu36I	CCTNAGG	1 cut(s)	221
BsuRI	GGCC	3 cut(s)	156, 181, 457
BtsCI	GGATG	3 cut(s)	49, 409, 440
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	180, 420, 455
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	2 cut(s)	98, 476
CviJI	RGCY	9 cut(s)	73, 128, 156, 181, 278, 356, 376, 436, 457
CviKI_1	RGCY	9 cut(s)	73, 128, 156, 181, 278, 356, 376, 436, 457
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
Eco147I	AGGCCT	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	420
Eco72I	CACGTG	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	412
FaeI	CATG	2 cut(s)	101, 479
FaiI	YATR	4 cut(s)	99, 346, 348, 477
FatI	CATG	2 cut(s)	97, 475
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	3 cut(s)	56, 396, 427
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	4 cut(s)	125, 177, 366, 405
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	156, 181, 457
HapII	CCGG	1 cut(s)	77
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	101, 479
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	444
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	468
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	94, 260
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	101, 479
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	446
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	9 cut(s)	90, 366, 399, 416, 426, 438, 450, 453, 457
LweI	GCATC	2 cut(s)	369, 449
MaeI	CTAG	4 cut(s)	125, 177, 366, 405
MaeII	ACGT	1 cut(s)	286
MalI	GATC	1 cut(s)	448
MboI	GATC	1 cut(s)	446
MboII	GAAGA	1 cut(s)	344
MfeI	CAATTG	2 cut(s)	33, 261
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	3 cut(s)	33, 172, 261
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	6 cut(s)	47, 74, 162, 220, 306, 388
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	414
MunI	CAATTG	2 cut(s)	33, 261
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	206
NdeII	GATC	1 cut(s)	446
NlaIII	CATG	2 cut(s)	101, 479
NlaIV	GGNNCC	2 cut(s)	218, 435
NmeAIII	GCCGAG	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	156
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	232
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	412
PspCI	CACGTG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	218, 435
PspPI	GGNCC	3 cut(s)	180, 420, 455
PsuI	RGATCY	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	376
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	446
Sau96I	GGNCC	3 cut(s)	180, 420, 455
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	5 cut(s)	58, 151, 289, 378, 399
SfaNI	GCATC	2 cut(s)	369, 449
SgrAI	CRCCGGYG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	33, 172, 261
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	206, 230
SspMI	CTAG	4 cut(s)	125, 177, 366, 405
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	412
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	385
TasI	AATT	3 cut(s)	33, 172, 261
TauI	GCSGC	1 cut(s)	233
TscAI	CASTG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	420
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	172
XspI	CTAG	4 cut(s)	125, 177, 366, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.