Rroxscaffold_3G00249060

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
42614298 .. 42616731
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249060.1

Sequence Viewer

Length: 219 bp
ATGAGGCCTCTTGCATGTTTTGGAAATTATCAGTTTTTACAACTTGAAATGGTTTGCGTGGATTGGATTGATATGTTGGCAATTGATGGGGAAGTAAGGAGAGGTCAGTTCCTCCTTGAGCCACCGGTGGTGGGCAGTGTACACCATGCCCTTGATTATTGTTATCTCCCCTTTGTCTCTAGCCTTGTGATTATTGAATTCCGGAAAGTGAATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.26

Weight (kDa)

5.04

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 201
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 131
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 2 cut(s) 47, 197
Alw26I GTCTC 1 cut(s) 181
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 197
AsiGI ACCGGT 1 cut(s) 124
BccI CCATC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 180, 217
BpuEI CTTGAG 1 cut(s) 137
BsaWI WCCGGW 2 cut(s) 124, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 131
BshFI GGCC 1 cut(s) 7
BshTI ACCGGT 1 cut(s) 124
BsiSI CCGG 2 cut(s) 125, 202
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 7
Bsp13I TCCGGA 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 139
BspANI GGCC 1 cut(s) 7
BspEI TCCGGA 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 124
BsrGI TGTACA 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 18
BsuRI GGCC 1 cut(s) 7
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 124
Csp6I GTAC 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 124
CviAII CATG 2 cut(s) 15, 146
CviJI RGCY 4 cut(s) 7, 121, 183, 216
CviKI_1 RGCY 4 cut(s) 7, 121, 183, 216
CviQI GTAC 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 197
FaeI CATG 2 cut(s) 18, 149
FaiI YATR 3 cut(s) 16, 74, 147
FatI CATG 2 cut(s) 14, 145
FspBI CTAG 2 cut(s) 180, 217
HaeIII GGCC 1 cut(s) 7
HapII CCGG 2 cut(s) 125, 202
Hin1II CATG 2 cut(s) 18, 149
HpaII CCGG 2 cut(s) 125, 202
Hpy166II GTNNAC 2 cut(s) 140, 142
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 140, 142
HpyCH4V TGCA 1 cut(s) 14
Hsp92II CATG 2 cut(s) 18, 149
Kpn2I TCCGGA 1 cut(s) 201
LpnPI CCDG 2 cut(s) 138, 215
MaeI CTAG 2 cut(s) 180, 217
MfeI CAATTG 1 cut(s) 81
MluCI AATT 3 cut(s) 25, 81, 197
MnlI CCTC 3 cut(s) 18, 95, 122
MroI TCCGGA 1 cut(s) 201
MspI CCGG 2 cut(s) 125, 202
MunI CAATTG 1 cut(s) 81
NlaIII CATG 2 cut(s) 18, 149
NspI RCATGY 1 cut(s) 18
PceI AGGCCT 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 124
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SetI ASST 1 cut(s) 106
SgrAI CRCCGGYG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 3 cut(s) 25, 81, 197
SseBI AGGCCT 1 cut(s) 7
SspMI CTAG 2 cut(s) 180, 217
StuI AGGCCT 1 cut(s) 7
TasI AATT 3 cut(s) 25, 81, 197
TatI WGTACW 1 cut(s) 139
TscAI CASTG 1 cut(s) 142
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 18
XspI CTAG 2 cut(s) 180, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.