RLG00000030096

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
55116987 .. 55118318
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030096

Sequence Viewer

Length: 327 bp
ATGGCTGGAGCTAATGATGAGTGGGTACCTCGACTGGAGAATGGGGGCGAAGAAATTCCAAATTACGAGGACAGTGATGATGGTCAAGATGATAGCCTGTATGATGATGATCATGATGGATTGCTTGATGAGGAAGAAGAGTCTGGTCAAGATGATTCATCTAGAGATGATGAATCTGCTGATGGTAATTATAATTCTGCTGCAGAGGATGAGGAATATGCAGCATATAGTGTTGATGATGATTTCCTATTTGAGTGGTTAACAGAAGATGAGGGGTTGGTCAAACAATTGGAGGAGAGGGATGTTCTAAAGTTGGTGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.25

Weight (kDa)

4.05

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
Acc65I GGTACC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 25
AcsI RAATTY 1 cut(s) 54
AfaI GTAC 1 cut(s) 27
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 200, 221
ApoI RAATTY 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 54
Asp718I GGTACC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 187, 233
BccI CCATC 3 cut(s) 74, 110, 176
BclI TGATCA 1 cut(s) 109
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 201, 222
BlsI GCNGC 2 cut(s) 202, 223
BmiI GGNNCC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 27, 56
BsaBI GATNNNNATC 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 108
BseGI GGATG 2 cut(s) 214, 307
BseJI GATNNNNATC 1 cut(s) 108
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 187, 233
BshNI GGYRCC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 109
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 39
BssMI GATC 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 132
BstF5I GGATG 2 cut(s) 214, 307
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 187, 233
BtsCI GGATG 2 cut(s) 214, 307
BtsIMutI CAGTG 1 cut(s) 79
CciI TCATGA 1 cut(s) 112
Csp6I GTAC 1 cut(s) 26
CviAII CATG 1 cut(s) 113
CviJI RGCY 3 cut(s) 5, 11, 96
CviKI_1 RGCY 3 cut(s) 5, 11, 96
CviQI GTAC 1 cut(s) 26
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
FaeI CATG 1 cut(s) 116
FaiI YATR 6 cut(s) 102, 114, 192, 219, 226, 228
FatI CATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 201, 222
FokI GGATG 2 cut(s) 221, 314
Fsp4HI GCNGC 2 cut(s) 201, 222
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 201, 222
GsuI CTGGAG 2 cut(s) 27, 56
Hin1II CATG 1 cut(s) 116
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 3 cut(s) 140, 155, 173
HpaI GTTAAC 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 261
Hpy188III TCNNGA 4 cut(s) 86, 113, 149, 162
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 203, 221
Hsp92II CATG 1 cut(s) 116
KpnI GGTACC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 109
KspAI GTTAAC 1 cut(s) 261
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 3 cut(s) 20, 110, 129
Lsp1109I GCAGC 2 cut(s) 187, 233
MaeI CTAG 1 cut(s) 162
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 4 cut(s) 62, 146, 149, 278
MfeI CAATTG 1 cut(s) 287
MluCI AATT 5 cut(s) 54, 61, 187, 193, 287
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 8 cut(s) 39, 61, 124, 199, 205, 265, 286, 291
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 260
MunI CAATTG 1 cut(s) 287
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 27
PagI TCATGA 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 155, 173
PkrI GCNGC 2 cut(s) 202, 223
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PsiI TTATAA 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 205
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 2 cut(s) 201, 222
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 1 cut(s) 149
SetI ASST 2 cut(s) 13, 31
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 5 cut(s) 54, 61, 187, 193, 287
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 31
TasI AATT 5 cut(s) 54, 61, 187, 193, 287
TfiI GAWTC 2 cut(s) 155, 173
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 79
TseI GCWGC 2 cut(s) 200, 221
TspDTI ATGAA 2 cut(s) 147, 186
TspRI CASTG 1 cut(s) 79
XapI RAATTY 1 cut(s) 54
XbaI TCTAGA 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.