DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821 |
| rosa_roxburghii | Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730 |
| rosa_rugosa | Rorug02G0307200 |
| rosa_samantha | Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 152 |
| AciI | CCGC | 1 cut(s) | 133 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 243 |
| AgsI | TTSAA | 2 cut(s) | 176, 241 |
| AluBI | AGCT | 2 cut(s) | 74, 334 |
| AluI | AGCT | 2 cut(s) | 74, 334 |
| Alw26I | GTCTC | 1 cut(s) | 293 |
| Aor13HI | TCCGGA | 1 cut(s) | 152 |
| AoxI | GGCC | 2 cut(s) | 85, 234 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 278, 310 |
| AsuHPI | GGTGA | 1 cut(s) | 125 |
| AsuII | TTCGAA | 2 cut(s) | 260, 344 |
| BanII | GRGCYC | 1 cut(s) | 170 |
| BbsI | GAAGAC | 2 cut(s) | 130, 333 |
| BccI | CCATC | 2 cut(s) | 77, 112 |
| BceAI | ACGGC | 3 cut(s) | 86, 131, 146 |
| BcoDI | GTCTC | 1 cut(s) | 293 |
| BfaI | CTAG | 2 cut(s) | 248, 335 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 364 |
| BglII | AGATCT | 1 cut(s) | 337 |
| BisI | GCNGC | 1 cut(s) | 134 |
| BlsI | GCNGC | 1 cut(s) | 135 |
| BmrI | ACTGGG | 1 cut(s) | 22 |
| BmuI | ACTGGG | 1 cut(s) | 22 |
| BpiI | GAAGAC | 2 cut(s) | 130, 333 |
| Bpu14I | TTCGAA | 2 cut(s) | 260, 344 |
| BpuEI | CTTGAG | 2 cut(s) | 81, 196 |
| BsaJI | CCNNGG | 1 cut(s) | 106 |
| BsaWI | WCCGGW | 1 cut(s) | 152 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 243 |
| Bse1I | ACTGG | 2 cut(s) | 28, 225 |
| BseAI | TCCGGA | 1 cut(s) | 152 |
| BseDI | CCNNGG | 1 cut(s) | 106 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BseMII | CTCAG | 3 cut(s) | 27, 291, 374 |
| BseNI | ACTGG | 2 cut(s) | 28, 225 |
| BshFI | GGCC | 2 cut(s) | 87, 236 |
| BsiSI | CCGG | 1 cut(s) | 153 |
| BslFI | GGGAC | 2 cut(s) | 266, 372 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BsmAI | GTCTC | 1 cut(s) | 293 |
| BsmFI | GGGAC | 2 cut(s) | 266, 372 |
| BsnI | GGCC | 2 cut(s) | 87, 236 |
| Bsp119I | TTCGAA | 2 cut(s) | 260, 344 |
| Bsp1286I | GDGCHC | 1 cut(s) | 170 |
| Bsp13I | TCCGGA | 1 cut(s) | 152 |
| Bsp143I | GATC | 1 cut(s) | 337 |
| BspACI | CCGC | 1 cut(s) | 133 |
| BspANI | GGCC | 2 cut(s) | 87, 236 |
| BspCNI | CTCAG | 3 cut(s) | 26, 290, 373 |
| BspEI | TCCGGA | 1 cut(s) | 152 |
| BspT104I | TTCGAA | 2 cut(s) | 260, 344 |
| BsrI | ACTGG | 2 cut(s) | 28, 225 |
| BssECI | CCNNGG | 1 cut(s) | 106 |
| BssMI | GATC | 1 cut(s) | 337 |
| BssT1I | CCWWGG | 1 cut(s) | 106 |
| Bst4CI | ACNGT | 1 cut(s) | 180 |
| BstBI | TTCGAA | 2 cut(s) | 260, 344 |
| BstC8I | GCNNGC | 1 cut(s) | 356 |
| BstDEI | CTNAG | 4 cut(s) | 13, 277, 303, 360 |
| BstKTI | GATC | 1 cut(s) | 340 |
| BstMAI | GTCTC | 1 cut(s) | 293 |
| BstMBI | GATC | 1 cut(s) | 337 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 364 |
| BstV2I | GAAGAC | 2 cut(s) | 130, 333 |
| BstX2I | RGATCY | 1 cut(s) | 337 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 232 |
| BstYI | RGATCY | 1 cut(s) | 337 |
| BsuRI | GGCC | 2 cut(s) | 87, 236 |
| BtsIMutI | CAGTG | 3 cut(s) | 185, 232, 368 |
| Cac8I | GCNNGC | 1 cut(s) | 356 |
| CviAII | CATG | 1 cut(s) | 368 |
| DdeI | CTNAG | 4 cut(s) | 13, 277, 303, 360 |
| DpnI | GATC | 1 cut(s) | 339 |
| DpnII | GATC | 1 cut(s) | 337 |
| Eco130I | CCWWGG | 1 cut(s) | 106 |
| Eco24I | GRGCYC | 1 cut(s) | 170 |
| EcoT14I | CCWWGG | 1 cut(s) | 106 |
| EcoT38I | GRGCYC | 1 cut(s) | 170 |
| ErhI | CCWWGG | 1 cut(s) | 106 |
| FaeI | CATG | 1 cut(s) | 371 |
| FaiI | YATR | 2 cut(s) | 291, 369 |
| FaqI | GGGAC | 2 cut(s) | 266, 372 |
| FatI | CATG | 1 cut(s) | 367 |
| Fnu4HI | GCNGC | 1 cut(s) | 134 |
| FriOI | GRGCYC | 1 cut(s) | 170 |
| Fsp4HI | GCNGC | 1 cut(s) | 134 |
| FspBI | CTAG | 2 cut(s) | 248, 335 |
| GluI | GCNGC | 1 cut(s) | 134 |
| HaeIII | GGCC | 2 cut(s) | 87, 236 |
| HapII | CCGG | 1 cut(s) | 153 |
| Hin1II | CATG | 1 cut(s) | 371 |
| HinfI | GANTC | 4 cut(s) | 92, 275, 281, 293 |
| HpaII | CCGG | 1 cut(s) | 153 |
| HphI | GGTGA | 1 cut(s) | 125 |
| Hpy188I | TCNGA | 3 cut(s) | 280, 298, 396 |
| Hpy188III | TCNNGA | 1 cut(s) | 153 |
| HpyAV | CCTTC | 2 cut(s) | 247, 259 |
| HpyCH4III | ACNGT | 1 cut(s) | 180 |
| HpyCH4V | TGCA | 1 cut(s) | 222 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 364 |
| HpyF3I | CTNAG | 4 cut(s) | 13, 277, 303, 360 |
| Hsp92II | CATG | 1 cut(s) | 371 |
| Kpn2I | TCCGGA | 1 cut(s) | 152 |
| Kzo9I | GATC | 1 cut(s) | 337 |
| LmnI | GCTCC | 1 cut(s) | 71 |
| LpnPI | CCDG | 4 cut(s) | 41, 166, 238, 257 |
| MaeI | CTAG | 2 cut(s) | 248, 335 |
| MalI | GATC | 1 cut(s) | 339 |
| MboI | GATC | 1 cut(s) | 337 |
| MboII | GAAGA | 3 cut(s) | 135, 274, 338 |
| MflI | RGATCY | 1 cut(s) | 337 |
| MhlI | GDGCHC | 1 cut(s) | 170 |
| MluCI | AATT | 3 cut(s) | 36, 196, 347 |
| MlyI | GAGTC | 3 cut(s) | 269, 275, 302 |
| MmeI | TCCRAC | 1 cut(s) | 276 |
| MnlI | CCTC | 8 cut(s) | 18, 29, 66, 98, 104, 151, 369, 394 |
| MroI | TCCGGA | 1 cut(s) | 152 |
| MspI | CCGG | 1 cut(s) | 153 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 364 |
| NdeII | GATC | 1 cut(s) | 337 |
| NlaIII | CATG | 1 cut(s) | 371 |
| NspV | TTCGAA | 2 cut(s) | 260, 344 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 87 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 1 cut(s) | 135 |
| PleI | GAGTC | 3 cut(s) | 269, 275, 301 |
| PpsI | GAGTC | 3 cut(s) | 269, 275, 301 |
| PsuI | RGATCY | 1 cut(s) | 337 |
| SatI | GCNGC | 1 cut(s) | 134 |
| Sau3AI | GATC | 1 cut(s) | 337 |
| SchI | GAGTC | 3 cut(s) | 269, 275, 302 |
| SduI | GDGCHC | 1 cut(s) | 170 |
| SetI | ASST | 6 cut(s) | 10, 76, 115, 309, 336, 405 |
| SfuI | TTCGAA | 2 cut(s) | 260, 344 |
| SmlI | CTYRAG | 2 cut(s) | 96, 211 |
| SmoI | CTYRAG | 2 cut(s) | 96, 211 |
| Sse9I | AATT | 3 cut(s) | 36, 196, 347 |
| SsiI | CCGC | 1 cut(s) | 133 |
| SspMI | CTAG | 2 cut(s) | 248, 335 |
| StyI | CCWWGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 1 cut(s) | 180 |
| TaqI | TCGA | 4 cut(s) | 90, 260, 284, 344 |
| TasI | AATT | 3 cut(s) | 36, 196, 347 |
| TauI | GCSGC | 1 cut(s) | 136 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| TscAI | CASTG | 3 cut(s) | 185, 232, 368 |
| TspDTI | ATGAA | 2 cut(s) | 17, 339 |
| TspRI | CASTG | 3 cut(s) | 185, 232, 368 |
| XspI | CTAG | 2 cut(s) | 248, 335 |