DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821 |
| rosa_roxburghii | Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730 |
| rosa_rugosa | Rorug02G0307200 |
| rosa_samantha | Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 18, 21, 24 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 150 |
| AgsI | TTSAA | 4 cut(s) | 67, 148, 169, 253 |
| AhlI | ACTAGT | 1 cut(s) | 8 |
| AluBI | AGCT | 1 cut(s) | 285 |
| AluI | AGCT | 1 cut(s) | 285 |
| Alw21I | GWGCWC | 1 cut(s) | 132 |
| AoxI | GGCC | 2 cut(s) | 36, 141 |
| BbsI | GAAGAC | 1 cut(s) | 240 |
| Bbv12I | GWGCWC | 1 cut(s) | 132 |
| BbvCI | CCTCAGC | 1 cut(s) | 267 |
| BcuI | ACTAGT | 1 cut(s) | 8 |
| BfaI | CTAG | 2 cut(s) | 9, 155 |
| BisI | GCNGC | 2 cut(s) | 19, 22 |
| BlsI | GCNGC | 2 cut(s) | 20, 23 |
| BpiI | GAAGAC | 1 cut(s) | 240 |
| BpmI | CTGGAG | 1 cut(s) | 65 |
| Bpu10I | CCTNAGC | 1 cut(s) | 267 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 185, 215 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 150 |
| Bse118I | RCCGGY | 1 cut(s) | 223 |
| Bse1I | ACTGG | 1 cut(s) | 183 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 150 |
| BseMII | CTCAG | 2 cut(s) | 145, 281 |
| BseNI | ACTGG | 1 cut(s) | 183 |
| BshFI | GGCC | 2 cut(s) | 38, 143 |
| BsiHKAI | GWGCWC | 1 cut(s) | 132 |
| BsiSI | CCGG | 1 cut(s) | 224 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 150 |
| BsnI | GGCC | 2 cut(s) | 38, 143 |
| Bsp1286I | GDGCHC | 1 cut(s) | 132 |
| BspACI | CCGC | 3 cut(s) | 18, 21, 24 |
| BspANI | GGCC | 2 cut(s) | 38, 143 |
| BspCNI | CTCAG | 2 cut(s) | 144, 280 |
| BsrFI | RCCGGY | 1 cut(s) | 223 |
| BsrI | ACTGG | 1 cut(s) | 183 |
| BssAI | RCCGGY | 1 cut(s) | 223 |
| Bst6I | CTCTTC | 1 cut(s) | 132 |
| BstC8I | GCNNGC | 2 cut(s) | 225, 263 |
| BstDEI | CTNAG | 2 cut(s) | 131, 267 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 104 |
| BstV2I | GAAGAC | 1 cut(s) | 240 |
| BsuRI | GGCC | 2 cut(s) | 38, 143 |
| BtsIMutI | CAGTG | 1 cut(s) | 139 |
| Cac8I | GCNNGC | 2 cut(s) | 225, 263 |
| Cfr10I | RCCGGY | 1 cut(s) | 223 |
| CviAII | CATG | 1 cut(s) | 104 |
| CviJI | RGCY | 8 cut(s) | 38, 59, 143, 154, 223, 227, 245, 285 |
| CviKI_1 | RGCY | 8 cut(s) | 38, 59, 143, 154, 223, 227, 245, 285 |
| DdeI | CTNAG | 2 cut(s) | 131, 267 |
| Eam1104I | CTCTTC | 1 cut(s) | 132 |
| EarI | CTCTTC | 1 cut(s) | 132 |
| Eco147I | AGGCCT | 1 cut(s) | 143 |
| FaeI | CATG | 1 cut(s) | 107 |
| FaiI | YATR | 2 cut(s) | 105, 198 |
| FatI | CATG | 1 cut(s) | 103 |
| Fnu4HI | GCNGC | 2 cut(s) | 19, 22 |
| Fsp4HI | GCNGC | 2 cut(s) | 19, 22 |
| FspBI | CTAG | 2 cut(s) | 9, 155 |
| GluI | GCNGC | 2 cut(s) | 19, 22 |
| GsuI | CTGGAG | 1 cut(s) | 65 |
| HaeIII | GGCC | 2 cut(s) | 38, 143 |
| HapII | CCGG | 1 cut(s) | 224 |
| Hin1II | CATG | 1 cut(s) | 107 |
| HinfI | GANTC | 3 cut(s) | 182, 188, 200 |
| HpaII | CCGG | 1 cut(s) | 224 |
| Hpy188I | TCNGA | 4 cut(s) | 187, 193, 205, 324 |
| Hpy188III | TCNNGA | 1 cut(s) | 44 |
| HpyAV | CCTTC | 2 cut(s) | 154, 163 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 104 |
| HpyF3I | CTNAG | 2 cut(s) | 131, 267 |
| Hsp92II | CATG | 1 cut(s) | 107 |
| KroI | GCCGGC | 1 cut(s) | 223 |
| KroNI | GCCGGC | 1 cut(s) | 225 |
| LpnPI | CCDG | 3 cut(s) | 29, 164, 237 |
| MaeI | CTAG | 2 cut(s) | 9, 155 |
| MaeIII | GTNAC | 1 cut(s) | 112 |
| MboII | GAAGA | 3 cut(s) | 149, 245, 297 |
| MhlI | GDGCHC | 1 cut(s) | 132 |
| MluCI | AATT | 2 cut(s) | 121, 254 |
| MlyI | GAGTC | 3 cut(s) | 176, 182, 209 |
| MmeI | TCCRAC | 1 cut(s) | 183 |
| MnlI | CCTC | 7 cut(s) | 42, 48, 133, 166, 205, 276, 285 |
| MroNI | GCCGGC | 1 cut(s) | 223 |
| MspI | CCGG | 1 cut(s) | 224 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 104 |
| NaeI | GCCGGC | 1 cut(s) | 225 |
| NgoMIV | GCCGGC | 1 cut(s) | 223 |
| NlaIII | CATG | 1 cut(s) | 107 |
| PceI | AGGCCT | 1 cut(s) | 143 |
| PdiI | GCCGGC | 1 cut(s) | 225 |
| PkrI | GCNGC | 2 cut(s) | 20, 23 |
| PleI | GAGTC | 3 cut(s) | 176, 182, 208 |
| PpsI | GAGTC | 3 cut(s) | 176, 182, 208 |
| SatI | GCNGC | 2 cut(s) | 19, 22 |
| SchI | GAGTC | 3 cut(s) | 176, 182, 209 |
| SduI | GDGCHC | 1 cut(s) | 132 |
| SetI | ASST | 2 cut(s) | 216, 287 |
| SpeI | ACTAGT | 1 cut(s) | 8 |
| Sse9I | AATT | 2 cut(s) | 121, 254 |
| SseBI | AGGCCT | 1 cut(s) | 143 |
| SsiI | CCGC | 3 cut(s) | 18, 21, 24 |
| SspMI | CTAG | 2 cut(s) | 9, 155 |
| StuI | AGGCCT | 1 cut(s) | 143 |
| TasI | AATT | 2 cut(s) | 121, 254 |
| TauI | GCSGC | 2 cut(s) | 21, 24 |
| TscAI | CASTG | 1 cut(s) | 139 |
| TspDTI | ATGAA | 1 cut(s) | 246 |
| TspRI | CASTG | 1 cut(s) | 139 |
| XspI | CTAG | 2 cut(s) | 9, 155 |