Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017000

Physical Location & Seq

Genomic Coordinates Forward (+)

87772623 .. 87776793

Gene Structure 4171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG552400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 611 bp

ATGGCCTCGATTCTCAAGCCGTCCAATAGGGTGAGATGGGAAGACGATGGCGACGATGAAGAGGCCTTCAAGGGGCAAGGGGAGTTTTTGAAGGAGGAACTGGACTCGAAGTCGGAGTATAAGTCGGAAAGTGAGGTGGTTGAGCCGGCTAATGAAGAAGAGTTGGCTCTTTTGAAATTGTGGTTGCCTAAGCGGCTTGAGGATAGCTTTGAGAGGCGTGGCATTTCTTCACTTTTTCCCATTCAGCTCAATGGTGAAACAGAAAGCGACCACCTTCCGGAGGTATCCATGGCAATGAGGACTGTTGGTAATGTGGGAGTTCAAATTGTTTGGAAGCATATCAGAATGACACAAGACCTTGTGAACGCTGCGAAGAAGAAGAGGGATTTGTACCAGTCTGAGCACCCGAAGATCCAATACGAGAAGAAGCTCTGGAGGCTAAACCTGCCGAAATCAGATCCTGCTTTGCTTCCTCGCACTGCCACCGCCATTGGAGGAGAACGACGATGTCTTCTGAGCTTGGGTCAGATCAAAAAGGCTTGCGCACCAGAGAAGGAGAGGAAATTGCACAAGTCTGAGCACTTCGTGAGTTCGAGTGGAACCCAGAAATG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

203

Amino Acids

23.21

Weight (kDa)

6.98

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017000)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821
rosa_roxburghii	Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730
rosa_rugosa	Rorug02G0307200
rosa_samantha	Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	544
Acc36I	ACCTGC	1 cut(s)	453
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	2 cut(s)	193, 486
AclWI	GGATC	2 cut(s)	406, 452
AdeI	CACNNNGTG	1 cut(s)	586
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	72, 277, 280
AgsI	TTSAA	4 cut(s)	70, 91, 175, 323
AhdI	GACNNNNNGTC	1 cut(s)	109
AluBI	AGCT	4 cut(s)	207, 247, 430, 519
AluI	AGCT	4 cut(s)	207, 247, 430, 519
Alw21I	GWGCWC	2 cut(s)	405, 582
AlwI	GGATC	2 cut(s)	406, 452
AlwNI	CAGNNNCTG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	2 cut(s)	3, 63
ApeKI	GCWGC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	43, 266
BarI	GAAGNNNNNNTAC	2 cut(s)	401, 433
BbsI	GAAGAC	2 cut(s)	48, 503
Bbv12I	GWGCWC	2 cut(s)	405, 582
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	30, 41
BceAI	ACGGC	1 cut(s)	4
BciVI	GTATCC	1 cut(s)	295
BfuAI	ACCTGC	1 cut(s)	453
BfuI	GTATCC	1 cut(s)	295
BglI	GCCNNNNNGGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	194, 369
BlsI	GCNGC	2 cut(s)	195, 370
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	601
BpiI	GAAGAC	2 cut(s)	48, 503
BpmI	CTGGAG	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 277, 280
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	105, 394
Bse3DI	GCAATG	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	72, 277, 280
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	390, 506, 567
BseNI	ACTGG	2 cut(s)	105, 394
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	2 cut(s)	5, 65
BsiHKAI	GWGCWC	2 cut(s)	405, 582
BsiSI	CCGG	2 cut(s)	146, 278
BslI	CCNNNNNNNGG	3 cut(s)	72, 277, 280
BsnI	GGCC	2 cut(s)	5, 65
Bsp1286I	GDGCHC	2 cut(s)	405, 582
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	411, 457, 528
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	2 cut(s)	193, 486
BspANI	GGCC	2 cut(s)	5, 65
BspCNI	CTCAG	3 cut(s)	391, 507, 568
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	453
BspPI	GGATC	2 cut(s)	406, 452
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	105, 394
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	411, 457, 528
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	3 cut(s)	54, 153, 374
BstC8I	GCNNGC	2 cut(s)	147, 541
BstDEI	CTNAG	4 cut(s)	189, 399, 515, 576
BstDSI	CCRYGG	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	3 cut(s)	414, 460, 531
BstMBI	GATC	3 cut(s)	411, 457, 528
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 436, 445
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	2 cut(s)	48, 503
BstX2I	RGATCY	2 cut(s)	411, 457
BstYI	RGATCY	2 cut(s)	411, 457
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	5, 65
BtgI	CCRYGG	1 cut(s)	288
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	147, 541
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	391
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	1 cut(s)	289
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	4 cut(s)	189, 399, 515, 576
DpnI	GATC	3 cut(s)	413, 459, 530
DpnII	GATC	3 cut(s)	411, 457, 528
DraIII	CACNNNGTG	1 cut(s)	586
DriI	GACNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	3 cut(s)	54, 153, 374
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	3 cut(s)	54, 153, 374
Eco130I	CCWWGG	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	1 cut(s)	292
FaiI	YATR	3 cut(s)	120, 290, 339
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	194, 369
Fsp4HI	GCNGC	2 cut(s)	194, 369
FspI	TGCGCA	1 cut(s)	544
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	2 cut(s)	194, 369
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	5, 65
HapII	CCGG	2 cut(s)	146, 278
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	2 cut(s)	10, 104
HpaII	CCGG	2 cut(s)	146, 278
HphI	GGTGA	2 cut(s)	43, 266
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	8 cut(s)	115, 127, 344, 400, 457, 516, 528, 577
Hpy188III	TCNNGA	3 cut(s)	278, 433, 586
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	2 cut(s)	56, 507
HpyAV	CCTTC	4 cut(s)	76, 85, 284, 547
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	568
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 436, 445
HpyF3I	CTNAG	4 cut(s)	189, 399, 515, 576
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	543
Kpn2I	TCCGGA	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	411, 457, 528
LpnPI	CCDG	8 cut(s)	86, 159, 291, 407, 418, 458, 474, 561
Lsp1109I	GCAGC	1 cut(s)	355
MalI	GATC	3 cut(s)	413, 459, 530
MboI	GATC	3 cut(s)	411, 457, 528
MflI	RGATCY	2 cut(s)	411, 457
MhlI	GDGCHC	2 cut(s)	405, 582
MluCI	AATT	3 cut(s)	176, 324, 563
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	93, 105
MroI	TCCGGA	1 cut(s)	277
MroNI	GCCGGC	1 cut(s)	145
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	2 cut(s)	146, 278
MwoI	GCNNNNNNNGC	3 cut(s)	193, 436, 445
NaeI	GCCGGC	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	411, 457, 528
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	601
NsbI	TGCGCA	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	507
PkrI	GCNGC	2 cut(s)	195, 370
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	411, 457
PsyI	GACNNNGTC	1 cut(s)	507
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	293
SatI	GCNGC	2 cut(s)	194, 369
Sau3AI	GATC	3 cut(s)	411, 457, 528
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	405, 582
SetI	ASST	9 cut(s)	138, 209, 249, 276, 285, 360, 432, 447, 521
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	2 cut(s)	14, 197
SmoI	CTYRAG	2 cut(s)	14, 197
Sse9I	AATT	3 cut(s)	176, 324, 563
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	193, 486
StuI	AGGCCT	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	3 cut(s)	8, 107, 593
TasI	AATT	3 cut(s)	176, 324, 563
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	72, 168
TspRI	CASTG	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	507
XagI	CCTNNNNNAGG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.