Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0017000

Physical Location & Seq

Genomic Coordinates Reverse (-)

50782944 .. 50784439

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG398100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGAATACAACGGCGGCGTTTCGTTGCCGTTTCTGGAGAGGCAGAGGGCTCACTTCAACAGTGTTTTGAGAGCAATGATTGTTTTCACTACTCAGGCGATTGCGCCAGTGAAGTGGCCTTCAAGGGGCTAGGGGACTTTTCAAAGAAGAAGCTGGACTCGGACTCGGAGTATGAGTCGGAGACTGAGGTGGTTGAGCTGACTAATGAAGACGAGCGGGCTCTTTTGAAATTGGGCTTGCCTCAGTGGCATGGCATTTTTTCGCCTTTTCCTATTCAGGCACTGATTGAGAAAACCAATCTGAATCCCAAGGAAGTTGGGGATATTGTTGTCGGTACTGTGTTGGCTCCAAGATCTCAAAGAGCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

123

Amino Acids

13.6

Weight (kDa)

4.8

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017000)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821
rosa_roxburghii	Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730
rosa_rugosa	Rorug02G0307200
rosa_samantha	Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	217
AciI	CCGC	2 cut(s)	16, 217
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	4 cut(s)	59, 124, 144, 229
AluBI	AGCT	4 cut(s)	154, 199, 365, 369
AluI	AGCT	4 cut(s)	154, 199, 365, 369
Alw26I	GTCTC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	107
AsuNHI	GCTAGC	1 cut(s)	365
BanII	GRGCYC	2 cut(s)	53, 223
BbsI	GAAGAC	1 cut(s)	216
BceAI	ACGGC	2 cut(s)	14, 29
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	131, 366
BglI	GCCNNNNNGGC	1 cut(s)	247
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	348
BmtI	GCTAGC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	3 cut(s)	108, 177, 257
BseNI	ACTGG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	53, 223
Bsp143I	GATC	1 cut(s)	353
BspACI	CCGC	2 cut(s)	16, 217
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	3 cut(s)	107, 178, 256
BspLI	GGNNCC	1 cut(s)	348
BspOI	GCTAGC	1 cut(s)	369
BsrBI	CCGCTC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	63, 340
BstC8I	GCNNGC	3 cut(s)	219, 239, 367
BstDEI	CTNAG	3 cut(s)	94, 186, 243
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	356
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	353
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	119
BtsIMutI	CAGTG	4 cut(s)	68, 115, 251, 281
Cac8I	GCNNGC	3 cut(s)	219, 239, 367
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	1 cut(s)	251
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	3 cut(s)	94, 186, 243
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	2 cut(s)	53, 223
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	2 cut(s)	53, 223
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	1 cut(s)	254
FaiI	YATR	2 cut(s)	174, 252
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	250
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	53, 223
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	2 cut(s)	131, 366
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	4 cut(s)	158, 164, 176, 304
Hpy188I	TCNGA	4 cut(s)	163, 169, 181, 303
Hpy188III	TCNNGA	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	63, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	3 cut(s)	94, 186, 243
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	5 cut(s)	21, 81, 121, 140, 263
MaeI	CTAG	2 cut(s)	131, 366
MalI	GATC	1 cut(s)	355
MbiI	CCGCTC	1 cut(s)	217
MboI	GATC	1 cut(s)	353
MboII	GAAGA	2 cut(s)	160, 221
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	53, 223
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	3 cut(s)	152, 158, 185
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	4 cut(s)	34, 40, 181, 252
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	353
NheI	GCTAGC	1 cut(s)	365
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	3 cut(s)	152, 158, 184
PpsI	GAGTC	3 cut(s)	152, 158, 184
PspN4I	GGNNCC	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	1 cut(s)	353
SchI	GAGTC	3 cut(s)	152, 158, 185
SduI	GDGCHC	2 cut(s)	53, 223
SetI	ASST	5 cut(s)	156, 192, 201, 367, 371
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	16, 217
SspMI	CTAG	2 cut(s)	131, 366
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	63, 340
TasI	AATT	1 cut(s)	230
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	304
TscAI	CASTG	4 cut(s)	68, 115, 251, 288
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	4 cut(s)	68, 115, 251, 288
XspI	CTAG	2 cut(s)	131, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.