Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017000

Physical Location & Seq

Genomic Coordinates Forward (+)

34664938 .. 34668058

Gene Structure 3121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGAAAACGAGGGCAGCGAGCAATAGTAGCGGCGACGTTTCGATGCGTTTCGGAGTGGCAAAGGGCTCACTTCAACGGTGTTTTGAGAACGATAAGTGTTTTCGCTACTCGAGCGATTACGGCGCCCGGTTCTGCACTTAGTGAAGAGGCCTTCAAGGGGCTAGGGACCTTTTTGAAGGAGGAGCTAGACTCGGAGTCGGAGAGTGAGGCTTGCAAGATCCGAATTGCTGAAAGAGTAACTGCATCGGAAGAACTGCTTCCACAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

90

Amino Acids

9.84

Weight (kDa)

6.58

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017000)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821
rosa_roxburghii	Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730
rosa_rugosa	Rorug02G0307200
rosa_samantha	Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	125
AdeI	CACNNNGTG	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	76, 157, 178
AhdI	GACNNNNNGTC	1 cut(s)	196
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
AlwI	GGATC	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	16
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	129
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	129
BfaI	CTAG	2 cut(s)	164, 188
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	2 cut(s)	17, 33
BlsI	GCNGC	2 cut(s)	18, 34
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	168
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	126, 169
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	35, 254
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpuMI	CCSGG	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	126, 169
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	124
BssMI	GATC	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	21, 214
BstDEI	CTNAG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 113, 122
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	21, 214
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	168
CviJI	RGCY	5 cut(s)	68, 152, 163, 187, 212
CviKI_1	RGCY	5 cut(s)	68, 152, 163, 187, 212
DdeI	CTNAG	1 cut(s)	140
DinI	GGCGCC	1 cut(s)	126
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
DraIII	CACNNNGTG	1 cut(s)	143
DriI	GACNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	141
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	141
Eco147I	AGGCCT	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	70
EgeI	GGCGCC	1 cut(s)	126
EheI	GGCGCC	1 cut(s)	126
FalI	AAGNNNNNCTT	1 cut(s)	243
FaqI	GGGAC	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	17, 33
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	2 cut(s)	17, 33
FspBI	CTAG	2 cut(s)	164, 188
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	17, 33
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	2 cut(s)	191, 197
HpaII	CCGG	1 cut(s)	129
Hpy188I	TCNGA	5 cut(s)	55, 196, 202, 224, 250
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	163, 172
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	137, 216, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 113, 122
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	125
HspAI	GCGC	1 cut(s)	125
KasI	GGCGCC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	35, 254
MaeI	CTAG	2 cut(s)	164, 188
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	2 cut(s)	158, 263
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	225
Mly113I	GGCGCC	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	185, 206
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	5, 142, 175, 202
MroXI	GAANNNNTTC	1 cut(s)	258
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	29, 113, 122
NarI	GGCGCC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	219
NlaIV	GGNNCC	2 cut(s)	126, 169
PaeR7I	CTCGAG	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	18, 34
PleI	GAGTC	2 cut(s)	185, 205
PluTI	GGCGCC	1 cut(s)	128
PpsI	GAGTC	2 cut(s)	185, 205
PpuMI	RGGWCCY	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	126, 169
PspPI	GGNCC	1 cut(s)	168
PspPPI	RGGWCCY	1 cut(s)	168
PspXI	VCTCGAGB	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	219
SatI	GCNGC	2 cut(s)	17, 33
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	2 cut(s)	185, 206
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	3 cut(s)	41, 173, 189
SfaNI	GCATC	2 cut(s)	35, 254
SfoI	GGCGCC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	225
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	32
SspDI	GGCGCC	1 cut(s)	124
SspMI	CTAG	2 cut(s)	164, 188
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	43, 112
TasI	AATT	1 cut(s)	225
TauI	GCSGC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	168
XhoI	CTCGAG	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	2 cut(s)	164, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.