DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821 |
| rosa_roxburghii | Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730 |
| rosa_rugosa | Rorug02G0307200 |
| rosa_samantha | Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 141 |
| AgsI | TTSAA | 3 cut(s) | 139, 160, 355 |
| AluBI | AGCT | 4 cut(s) | 74, 169, 232, 236 |
| AluI | AGCT | 4 cut(s) | 74, 169, 232, 236 |
| Alw26I | GTCTC | 1 cut(s) | 191 |
| AoxI | GGCC | 1 cut(s) | 85 |
| AspLEI | GCGC | 1 cut(s) | 122 |
| AsuII | TTCGAA | 1 cut(s) | 242 |
| AsuNHI | GCTAGC | 1 cut(s) | 232 |
| BbsI | GAAGAC | 1 cut(s) | 231 |
| BccI | CCATC | 1 cut(s) | 77 |
| BceAI | ACGGC | 1 cut(s) | 86 |
| BcoDI | GTCTC | 1 cut(s) | 191 |
| BfaI | CTAG | 2 cut(s) | 146, 233 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 262 |
| BmrI | ACTGGG | 1 cut(s) | 22 |
| BmtI | GCTAGC | 1 cut(s) | 236 |
| BmuI | ACTGGG | 1 cut(s) | 22 |
| BpiI | GAAGAC | 1 cut(s) | 231 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 158, 190 |
| Bpu14I | TTCGAA | 1 cut(s) | 242 |
| BpuEI | CTTGAG | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 2 cut(s) | 106, 324 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 141 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseDI | CCNNGG | 2 cut(s) | 106, 324 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 141 |
| BseMII | CTCAG | 4 cut(s) | 27, 192, 195, 272 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseRI | GAGGAG | 1 cut(s) | 126 |
| BshFI | GGCC | 1 cut(s) | 87 |
| BslFI | GGGAC | 1 cut(s) | 164 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 141 |
| BsmAI | GTCTC | 1 cut(s) | 191 |
| BsmFI | GGGAC | 1 cut(s) | 164 |
| BsnI | GGCC | 1 cut(s) | 87 |
| Bsp119I | TTCGAA | 1 cut(s) | 242 |
| BspANI | GGCC | 1 cut(s) | 87 |
| BspCNI | CTCAG | 4 cut(s) | 26, 193, 194, 271 |
| BspOI | GCTAGC | 1 cut(s) | 236 |
| BspT104I | TTCGAA | 1 cut(s) | 242 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 2 cut(s) | 106, 324 |
| BssT1I | CCWWGG | 2 cut(s) | 106, 324 |
| BstBI | TTCGAA | 1 cut(s) | 242 |
| BstC8I | GCNNGC | 2 cut(s) | 234, 254 |
| BstDEI | CTNAG | 4 cut(s) | 13, 181, 201, 258 |
| BstHHI | GCGC | 1 cut(s) | 122 |
| BstMAI | GTCTC | 1 cut(s) | 191 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 262 |
| BstV2I | GAAGAC | 1 cut(s) | 231 |
| BsuRI | GGCC | 1 cut(s) | 87 |
| BtsI | GCAGTG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 2 cut(s) | 266, 303 |
| Cac8I | GCNNGC | 2 cut(s) | 234, 254 |
| CfoI | GCGC | 1 cut(s) | 122 |
| CviAII | CATG | 1 cut(s) | 266 |
| DdeI | CTNAG | 4 cut(s) | 13, 181, 201, 258 |
| Eco130I | CCWWGG | 2 cut(s) | 106, 324 |
| EcoT14I | CCWWGG | 2 cut(s) | 106, 324 |
| ErhI | CCWWGG | 2 cut(s) | 106, 324 |
| FaeI | CATG | 1 cut(s) | 269 |
| FaiI | YATR | 2 cut(s) | 189, 267 |
| FaqI | GGGAC | 1 cut(s) | 164 |
| FatI | CATG | 1 cut(s) | 265 |
| FspBI | CTAG | 2 cut(s) | 146, 233 |
| GlaI | GCGC | 1 cut(s) | 121 |
| HaeIII | GGCC | 1 cut(s) | 87 |
| HhaI | GCGC | 1 cut(s) | 122 |
| Hin1II | CATG | 1 cut(s) | 269 |
| Hin6I | GCGC | 1 cut(s) | 120 |
| HinP1I | GCGC | 1 cut(s) | 120 |
| HinfI | GANTC | 5 cut(s) | 92, 173, 179, 191, 319 |
| Hpy188I | TCNGA | 4 cut(s) | 178, 184, 196, 318 |
| HpyAV | CCTTC | 2 cut(s) | 145, 157 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 262 |
| HpyF3I | CTNAG | 4 cut(s) | 13, 181, 201, 258 |
| Hsp92II | CATG | 1 cut(s) | 269 |
| HspAI | GCGC | 1 cut(s) | 120 |
| LmnI | GCTCC | 2 cut(s) | 71, 166 |
| LpnPI | CCDG | 3 cut(s) | 41, 155, 278 |
| MaeI | CTAG | 2 cut(s) | 146, 233 |
| MboII | GAAGA | 2 cut(s) | 172, 236 |
| MluCI | AATT | 2 cut(s) | 36, 245 |
| MlyI | GAGTC | 3 cut(s) | 167, 173, 200 |
| MmeI | TCCRAC | 1 cut(s) | 174 |
| MnlI | CCTC | 7 cut(s) | 18, 29, 66, 98, 104, 196, 267 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 262 |
| NheI | GCTAGC | 1 cut(s) | 232 |
| NlaIII | CATG | 1 cut(s) | 269 |
| NspV | TTCGAA | 1 cut(s) | 242 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 87 |
| PfeI | GAWTC | 2 cut(s) | 92, 319 |
| PleI | GAGTC | 3 cut(s) | 167, 173, 199 |
| PpsI | GAGTC | 3 cut(s) | 167, 173, 199 |
| SchI | GAGTC | 3 cut(s) | 167, 173, 200 |
| SetI | ASST | 6 cut(s) | 10, 76, 171, 207, 234, 238 |
| SfuI | TTCGAA | 1 cut(s) | 242 |
| SmlI | CTYRAG | 1 cut(s) | 96 |
| SmoI | CTYRAG | 1 cut(s) | 96 |
| Sse9I | AATT | 2 cut(s) | 36, 245 |
| SspMI | CTAG | 2 cut(s) | 146, 233 |
| StyI | CCWWGG | 2 cut(s) | 106, 324 |
| TaqI | TCGA | 2 cut(s) | 90, 242 |
| TasI | AATT | 2 cut(s) | 36, 245 |
| TfiI | GAWTC | 2 cut(s) | 92, 319 |
| TscAI | CASTG | 2 cut(s) | 266, 303 |
| TspDTI | ATGAA | 3 cut(s) | 17, 141, 237 |
| TspRI | CASTG | 2 cut(s) | 266, 303 |
| XspI | CTAG | 2 cut(s) | 146, 233 |