Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017000

Physical Location & Seq

Genomic Coordinates Forward (+)

81462594 .. 81484104

Gene Structure 21511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG575000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCGGGTGACGCCGCAAACTGGTGTGAACAGCGCGGCAAGGGTCCGGGCCAAACAGAATGAAGAGGCCTTCAAGGGGCAAGGGGAGTTTTTGAAGGAGGAACTGGACTCGAAGTCGGAGTATAAGTCGGAAAGTGAGGTGGTTGAGCCGGCTAATGAAGAAGAGTTGGCTCTTTTGAAATTGTGGTTGCCTAAGCGGCTTGAGGATAGCTTTGAGAGGCGTGGCATTTCTTCACTTTTTCCCATTCAGATTTCACTAATTGTGAAGTCAATTGAAAAAAGCGACCACCTTCCGGAGGTATCCATGGCAATGAGGACTGTTGGTAATGTGGGAGTTCAAATTGTTTGGAAGCATATCAGAATGACACAAGACCTTGTGAACGCTGCGTCTGAGCACCCGAAGATCCAATACGAGAAGAAGCTCTGGAGGCTAAACCTGCCGAAATCAGATCCTGCTTTGCTTCCTCGCACTGCCACCGCCATTGGAGGAGAACGACGATGTCTTCTGAGCTTGGGTCAGATCAAAAAGGCTTGCGCACCAGAGAAGGAGAGGAAATTGCACAAGTCTGAGCACTTCGTGAGTTCGAGTGGAACCCAGAAATGTTTGTGGTCAGTGCTCATGAATCATGATGGACTAGAACACACAAAGCAGTACTACAGATCATGTTTGCTTTTGACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

227

Amino Acids

25.82

Weight (kDa)

9.1

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017000)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821
rosa_roxburghii	Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730
rosa_rugosa	Rorug02G0307200
rosa_samantha	Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	444
AccII	CGCG	1 cut(s)	35
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	5 cut(s)	4, 14, 35, 196, 477
AclWI	GGATC	2 cut(s)	397, 443
AcyI	GRCGYC	1 cut(s)	11
AdeI	CACNNNGTG	1 cut(s)	577
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	4 cut(s)	20, 75, 292, 295
AgsI	TTSAA	5 cut(s)	73, 94, 178, 275, 338
AhdI	GACNNNNNGTC	1 cut(s)	112
AluBI	AGCT	3 cut(s)	210, 421, 510
AluI	AGCT	3 cut(s)	210, 421, 510
Alw21I	GWGCWC	3 cut(s)	396, 573, 618
AlwI	GGATC	2 cut(s)	397, 443
AlwNI	CAGNNNCTG	1 cut(s)	452
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	2 cut(s)	48, 66
ApeKI	GCWGC	1 cut(s)	383
AspLEI	GCGC	2 cut(s)	35, 536
AspS9I	GGNCC	2 cut(s)	43, 48
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	43
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	3 cut(s)	396, 573, 618
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	1 cut(s)	623
BciVI	GTATCC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	47
BfaI	CTAG	1 cut(s)	635
BfmI	CTRYAG	1 cut(s)	655
BfuAI	ACCTGC	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	310
BglI	GCCNNNNNGGC	1 cut(s)	196
BisI	GCNGC	4 cut(s)	14, 36, 197, 384
BlsI	GCNGC	4 cut(s)	15, 37, 198, 385
BmcAI	AGTACT	1 cut(s)	653
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	43, 48
BmiI	GGNNCC	2 cut(s)	44, 592
BmrFI	CCNGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 75, 292, 295
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	25, 108
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	4 cut(s)	20, 75, 292, 295
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	3 cut(s)	381, 497, 558
BseNI	ACTGG	2 cut(s)	25, 108
BseRI	GAGGAG	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	50, 68
BsiHKAI	GWGCWC	3 cut(s)	396, 573, 618
BsiSI	CCGG	3 cut(s)	46, 149, 293
BslI	CCNNNNNNNGG	4 cut(s)	20, 75, 292, 295
BsnI	GGCC	2 cut(s)	50, 68
Bsp1286I	GDGCHC	3 cut(s)	396, 573, 618
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	402, 448, 519, 659
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	5 cut(s)	4, 14, 35, 196, 477
BspANI	GGCC	2 cut(s)	50, 68
BspCNI	CTCAG	3 cut(s)	382, 498, 559
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	2 cut(s)	618, 625
BspLI	GGNNCC	2 cut(s)	44, 592
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	397, 443
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	25, 108
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	402, 448, 519, 659
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	2 cut(s)	57, 156
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	150, 532
BstDEI	CTNAG	4 cut(s)	192, 390, 506, 567
BstDSI	CCRYGG	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	35, 536
BstKTI	GATC	4 cut(s)	405, 451, 522, 662
BstMBI	GATC	4 cut(s)	402, 448, 519, 659
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 196, 427, 436
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	655
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	2 cut(s)	402, 448
BstYI	RGATCY	2 cut(s)	402, 448
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	50, 68
BtgI	CCRYGG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	468, 618
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	150, 532
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	2 cut(s)	618, 625
CfoI	GCGC	2 cut(s)	35, 536
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	43, 48
CseI	GACGC	2 cut(s)	19, 375
Csp6I	GTAC	1 cut(s)	652
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	4 cut(s)	304, 619, 626, 663
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	4 cut(s)	192, 390, 506, 567
DpnI	GATC	4 cut(s)	404, 450, 521, 661
DpnII	GATC	4 cut(s)	402, 448, 519, 659
DraIII	CACNNNGTG	1 cut(s)	577
DriI	GACNNNNNGTC	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	57, 156
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	2 cut(s)	57, 156
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	307, 622, 629, 666
FaiI	YATR	6 cut(s)	123, 305, 354, 620, 627, 664
FatI	CATG	4 cut(s)	303, 618, 625, 662
Fnu4HI	GCNGC	4 cut(s)	14, 36, 197, 384
Fsp4HI	GCNGC	4 cut(s)	14, 36, 197, 384
FspBI	CTAG	1 cut(s)	635
FspI	TGCGCA	1 cut(s)	535
GlaI	GCGC	2 cut(s)	34, 535
GluI	GCNGC	4 cut(s)	14, 36, 197, 384
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	2 cut(s)	50, 68
HapII	CCGG	3 cut(s)	46, 149, 293
HgaI	GACGC	2 cut(s)	19, 375
HhaI	GCGC	2 cut(s)	35, 536
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	4 cut(s)	307, 622, 629, 666
Hin6I	GCGC	2 cut(s)	33, 534
HinP1I	GCGC	2 cut(s)	33, 534
HinfI	GANTC	3 cut(s)	107, 622, 676
HpaII	CCGG	3 cut(s)	46, 149, 293
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	28, 379
Hpy188I	TCNGA	9 cut(s)	118, 130, 249, 359, 391, 448, 507, 519, 568
Hpy188III	TCNNGA	5 cut(s)	293, 424, 577, 619, 626
Hpy8I	GTNNAC	2 cut(s)	28, 379
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	4 cut(s)	79, 88, 299, 538
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 196, 427, 436
HpyF3I	CTNAG	4 cut(s)	192, 390, 506, 567
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	4 cut(s)	307, 622, 629, 666
HspAI	GCGC	2 cut(s)	33, 534
Kpn2I	TCCGGA	1 cut(s)	292
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	402, 448, 519, 659
Lsp1109I	GCAGC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	635
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	4 cut(s)	404, 450, 521, 661
MboI	GATC	4 cut(s)	402, 448, 519, 659
MboII	GAAGA	7 cut(s)	74, 170, 173, 222, 412, 427, 494
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	2 cut(s)	402, 448
MhlI	GDGCHC	3 cut(s)	396, 573, 618
MluCI	AATT	5 cut(s)	179, 258, 270, 339, 554
MlyI	GAGTC	2 cut(s)	101, 670
MmeI	TCCRAC	2 cut(s)	96, 108
MroI	TCCGGA	1 cut(s)	292
MroNI	GCCGGC	1 cut(s)	148
MseI	TTAA	1 cut(s)	682
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	3 cut(s)	46, 149, 293
MspR9I	CCNGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	10, 196, 427, 436
NaeI	GCCGGC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	4 cut(s)	402, 448, 519, 659
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	4 cut(s)	307, 622, 629, 666
NlaIV	GGNNCC	2 cut(s)	44, 592
NmuCI	GTSAC	1 cut(s)	7
NsbI	TGCGCA	1 cut(s)	535
PagI	TCATGA	2 cut(s)	618, 625
PceI	AGGCCT	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	622
PflFI	GACNNNGTC	1 cut(s)	498
PkrI	GCNGC	4 cut(s)	15, 37, 198, 385
PleI	GAGTC	2 cut(s)	101, 670
PpsI	GAGTC	2 cut(s)	101, 670
PspN4I	GGNNCC	2 cut(s)	44, 592
PspPI	GGNCC	2 cut(s)	43, 48
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	402, 448
PsyI	GACNNNGTC	1 cut(s)	498
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	682
SatI	GCNGC	4 cut(s)	14, 36, 197, 384
Sau3AI	GATC	4 cut(s)	402, 448, 519, 659
Sau96I	GGNCC	2 cut(s)	43, 48
ScaI	AGTACT	1 cut(s)	653
SchI	GAGTC	2 cut(s)	101, 670
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	396, 573, 618
SetI	ASST	8 cut(s)	141, 212, 291, 300, 375, 423, 438, 512
SfcI	CTRYAG	1 cut(s)	655
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	5 cut(s)	179, 258, 270, 339, 554
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	5 cut(s)	4, 14, 35, 196, 477
SspMI	CTAG	1 cut(s)	635
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	110, 584
TasI	AATT	5 cut(s)	179, 258, 270, 339, 554
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	3 cut(s)	16, 38, 199
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TscAI	CASTG	2 cut(s)	475, 618
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	75, 171, 635
TspRI	CASTG	2 cut(s)	475, 618
Tth111I	GACNNNGTC	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	293
XspI	CTAG	1 cut(s)	635
ZrmI	AGTACT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.