DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821 |
| rosa_roxburghii | Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730 |
| rosa_rugosa | Rorug02G0307200 |
| rosa_samantha | Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 157 |
| AcsI | RAATTY | 1 cut(s) | 47 |
| AgsI | TTSAA | 3 cut(s) | 34, 55, 138 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 47, 79 |
| AluBI | AGCT | 1 cut(s) | 127 |
| AluI | AGCT | 1 cut(s) | 127 |
| AoxI | GGCC | 1 cut(s) | 27 |
| ApoI | RAATTY | 1 cut(s) | 47 |
| AspS9I | GGNCC | 1 cut(s) | 27 |
| BbsI | GAAGAC | 1 cut(s) | 126 |
| BbvCI | CCTCAGC | 1 cut(s) | 153 |
| BfaI | CTAG | 1 cut(s) | 41 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 157 |
| BisI | GCNGC | 1 cut(s) | 158 |
| BlsI | GCNGC | 1 cut(s) | 159 |
| BmgT120I | GGNCC | 1 cut(s) | 27 |
| BmiI | GGNNCC | 1 cut(s) | 28 |
| BpiI | GAAGAC | 1 cut(s) | 126 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 53, 85 |
| Bpu10I | CCTNAGC | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 1 cut(s) | 194 |
| Bse118I | RCCGGY | 1 cut(s) | 109 |
| BseMII | CTCAG | 2 cut(s) | 31, 167 |
| BseRI | GAGGAG | 1 cut(s) | 74 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BsiSI | CCGG | 1 cut(s) | 110 |
| BslFI | GGGAC | 1 cut(s) | 51 |
| BsmFI | GGGAC | 1 cut(s) | 51 |
| BsnI | GGCC | 1 cut(s) | 29 |
| BspACI | CCGC | 1 cut(s) | 157 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspCNI | CTCAG | 2 cut(s) | 30, 166 |
| BspLI | GGNNCC | 1 cut(s) | 28 |
| BsrFI | RCCGGY | 1 cut(s) | 109 |
| BssAI | RCCGGY | 1 cut(s) | 109 |
| BstC8I | GCNNGC | 3 cut(s) | 111, 129, 149 |
| BstDEI | CTNAG | 2 cut(s) | 17, 153 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 157 |
| BstV2I | GAAGAC | 1 cut(s) | 126 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BtsIMutI | CAGTG | 1 cut(s) | 25 |
| Cac8I | GCNNGC | 3 cut(s) | 111, 129, 149 |
| Cfr10I | RCCGGY | 1 cut(s) | 109 |
| Cfr13I | GGNCC | 1 cut(s) | 27 |
| CviAII | CATG | 1 cut(s) | 182 |
| CviJI | RGCY | 9 cut(s) | 29, 109, 113, 127, 131, 147, 160, 171, 186 |
| CviKI_1 | RGCY | 9 cut(s) | 29, 109, 113, 127, 131, 147, 160, 171, 186 |
| DdeI | CTNAG | 2 cut(s) | 17, 153 |
| EcoO109I | RGGNCCY | 1 cut(s) | 27 |
| FaeI | CATG | 1 cut(s) | 185 |
| FaiI | YATR | 3 cut(s) | 14, 84, 183 |
| FaqI | GGGAC | 1 cut(s) | 51 |
| FatI | CATG | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 1 cut(s) | 158 |
| Fsp4HI | GCNGC | 1 cut(s) | 158 |
| FspBI | CTAG | 1 cut(s) | 41 |
| GluI | GCNGC | 1 cut(s) | 158 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| HapII | CCGG | 1 cut(s) | 110 |
| Hin1II | CATG | 1 cut(s) | 185 |
| HinfI | GANTC | 3 cut(s) | 68, 74, 86 |
| HpaII | CCGG | 1 cut(s) | 110 |
| Hpy188I | TCNGA | 4 cut(s) | 73, 79, 91, 214 |
| HpyAV | CCTTC | 3 cut(s) | 17, 40, 49 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 157 |
| HpyF3I | CTNAG | 2 cut(s) | 17, 153 |
| Hsp92II | CATG | 1 cut(s) | 185 |
| KroI | GCCGGC | 1 cut(s) | 109 |
| KroNI | GCCGGC | 1 cut(s) | 111 |
| LpnPI | CCDG | 2 cut(s) | 113, 123 |
| MaeI | CTAG | 1 cut(s) | 41 |
| MboII | GAAGA | 1 cut(s) | 131 |
| MluCI | AATT | 3 cut(s) | 7, 47, 140 |
| MlyI | GAGTC | 2 cut(s) | 62, 95 |
| MmeI | TCCRAC | 2 cut(s) | 45, 69 |
| MnlI | CCTC | 4 cut(s) | 52, 91, 162, 171 |
| MroNI | GCCGGC | 1 cut(s) | 109 |
| MspA1I | CMGCKG | 1 cut(s) | 157 |
| MspI | CCGG | 1 cut(s) | 110 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 157 |
| NaeI | GCCGGC | 1 cut(s) | 111 |
| NgoMIV | GCCGGC | 1 cut(s) | 109 |
| NlaIII | CATG | 1 cut(s) | 185 |
| NlaIV | GGNNCC | 1 cut(s) | 28 |
| PdiI | GCCGGC | 1 cut(s) | 111 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| PkrI | GCNGC | 1 cut(s) | 159 |
| PleI | GAGTC | 2 cut(s) | 62, 94 |
| PpsI | GAGTC | 2 cut(s) | 62, 94 |
| PspN4I | GGNNCC | 1 cut(s) | 28 |
| PspPI | GGNCC | 1 cut(s) | 27 |
| SatI | GCNGC | 1 cut(s) | 158 |
| Sau96I | GGNCC | 1 cut(s) | 27 |
| SchI | GAGTC | 2 cut(s) | 62, 95 |
| SetI | ASST | 2 cut(s) | 102, 129 |
| SmlI | CTYRAG | 1 cut(s) | 173 |
| SmoI | CTYRAG | 1 cut(s) | 173 |
| Sse9I | AATT | 3 cut(s) | 7, 47, 140 |
| SsiI | CCGC | 1 cut(s) | 157 |
| SspMI | CTAG | 1 cut(s) | 41 |
| TasI | AATT | 3 cut(s) | 7, 47, 140 |
| TauI | GCSGC | 1 cut(s) | 160 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| TscAI | CASTG | 1 cut(s) | 25 |
| TspDTI | ATGAA | 2 cut(s) | 132, 197 |
| TspRI | CASTG | 1 cut(s) | 25 |
| XapI | RAATTY | 1 cut(s) | 47 |
| XspI | CTAG | 1 cut(s) | 41 |