Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017000

Physical Location & Seq

Genomic Coordinates Reverse (-)

15979367 .. 15985500

Gene Structure 6134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTCGCAAGAATTGTGAGTTTCGATAGGGTCTTCAAAACGGGTATGCTGTCTGTAAATTGGAACTATCTTGATGAGGAGATGAACGAAGGAGGCGAAAGAGACGGAAGAAGAAGAGGAGCCTTCAAGGGACTAGGGGACTTTTTGAAGGAGTTGGACTCGGATTCGGAATATGATTCGGAGAGTGAGGTGGTTGAGCCGGCTAATGAAGACGAGCTGGCTTTTTCGAAATTAGGCTTGCCTCGGCGGCTTGTGGATAGCCTTGAGAGGCATGGCTTTTCTTCCCTTTTTCCCATTCATTCGGATATAGAACCATTGTCAATAGAATGGATAAGAGTTACCATGCTTTCTCCGGGTAGACAGAGAAAGCATGTCACCCTCATCCATTCTATTGACGAGGAGGAAGGACTTGTCACGGTGGCCGTGGAGGCGGTTTCGGCCATAGAAAAAGAAGCAAAGAGAAACCCAACTCCATTGCACCGTGCAGCTAGGGTACTAATAAATTCTCAAATGGCAAATAGAGATTTTCCCCAGAAGGTAAATCTGGCCAATTTTTCCCACAGTTCTTCACCAAAAGAGTTATATTTTCTCAACTGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

200

Amino Acids

22.69

Weight (kDa)

5.23

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017000)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821
rosa_roxburghii	Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730
rosa_rugosa	Rorug02G0307200
rosa_samantha	Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	358
AciI	CCGC	2 cut(s)	247, 431
AcoI	YGGCCR	3 cut(s)	420, 438, 546
AcsI	RAATTY	1 cut(s)	502
AfaI	GTAC	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	37, 127, 148
AluBI	AGCT	2 cut(s)	217, 488
AluI	AGCT	2 cut(s)	217, 488
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	3 cut(s)	420, 438, 546
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	502
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	2 cut(s)	367, 561
AsuII	TTCGAA	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	548
BbsI	GAAGAC	2 cut(s)	25, 216
BbvI	GCAGC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	407
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	134, 489
BglI	GCCNNNNNGGC	2 cut(s)	247, 428
BisI	GCNGC	2 cut(s)	248, 486
BlsI	GCNGC	2 cut(s)	249, 487
Bme1390I	CCNGG	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	354
BpiI	GAAGAC	2 cut(s)	25, 216
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	242, 423
Bse118I	RCCGGY	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	473
BseDI	CCNNGG	2 cut(s)	242, 423
BseGI	GGATG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	473
BseRI	GAGGAG	3 cut(s)	92, 132, 413
BseXI	GCAGC	1 cut(s)	497
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	3 cut(s)	422, 440, 548
BsiSI	CCGG	2 cut(s)	200, 353
BslFI	GGGAC	2 cut(s)	144, 152
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	144, 152
BsnI	GGCC	3 cut(s)	422, 440, 548
Bsp119I	TTCGAA	1 cut(s)	227
BspACI	CCGC	2 cut(s)	247, 431
BspANI	GGCC	3 cut(s)	422, 440, 548
BspLI	GGNNCC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	473
BsrFI	RCCGGY	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	242, 423
Bst4CI	ACNGT	4 cut(s)	418, 482, 563, 596
Bst6I	CTCTTC	1 cut(s)	109
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	201, 219, 239
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	381
BstMAI	GTCTC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 428, 437
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	2 cut(s)	25, 216
BsuRI	GGCC	3 cut(s)	422, 440, 548
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	381
Cac8I	GCNNGC	3 cut(s)	201, 219, 239
Cfr10I	RCCGGY	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	3 cut(s)	272, 343, 371
CviQI	GTAC	1 cut(s)	494
EaeI	YGGCCR	3 cut(s)	420, 438, 546
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	3 cut(s)	275, 346, 374
FaiI	YATR	8 cut(s)	47, 174, 273, 308, 344, 372, 443, 583
FaqI	GGGAC	2 cut(s)	144, 152
FatI	CATG	3 cut(s)	271, 342, 370
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	248, 486
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	2 cut(s)	248, 486
FspBI	CTAG	2 cut(s)	134, 489
GluI	GCNGC	2 cut(s)	248, 486
HaeIII	GGCC	3 cut(s)	422, 440, 548
HapII	CCGG	2 cut(s)	200, 353
Hin1II	CATG	3 cut(s)	275, 346, 374
HinfI	GANTC	3 cut(s)	158, 164, 176
HpaII	CCGG	2 cut(s)	200, 353
HphI	GGTGA	2 cut(s)	367, 561
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	4 cut(s)	163, 169, 181, 304
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	5 cut(s)	83, 133, 142, 398, 529
HpyCH4III	ACNGT	4 cut(s)	418, 482, 563, 596
HpyCH4V	TGCA	2 cut(s)	478, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 428, 437
Hsp92II	CATG	3 cut(s)	275, 346, 374
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	5 cut(s)	203, 213, 366, 530, 545
Lsp1109I	GCAGC	1 cut(s)	497
MaeI	CTAG	2 cut(s)	134, 489
MaeIII	GTNAC	3 cut(s)	337, 373, 412
MboII	GAAGA	7 cut(s)	25, 120, 123, 126, 221, 273, 558
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	5 cut(s)	12, 58, 230, 502, 550
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	135
Mox20I	TGGCCA	1 cut(s)	548
MroNI	GCCGGC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	1 cut(s)	601
Msp20I	TGGCCA	1 cut(s)	548
MspI	CCGG	2 cut(s)	200, 353
MspR9I	CCNGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	247, 428, 437
NaeI	GCCGGC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	354
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	275, 346, 374
NlaIV	GGNNCC	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	373, 412
NspI	RCATGY	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	164, 176
PkrI	GCNGC	2 cut(s)	249, 487
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	601
SatI	GCNGC	2 cut(s)	248, 486
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	4 cut(s)	192, 219, 490, 540
SfuI	TTCGAA	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	5 cut(s)	12, 58, 230, 502, 550
SsiI	CCGC	2 cut(s)	247, 431
SspMI	CTAG	2 cut(s)	134, 489
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	418, 482, 563, 596
TaqI	TCGA	2 cut(s)	24, 227
TasI	AATT	5 cut(s)	12, 58, 230, 502, 550
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	164, 176
Tru1I	TTAA	1 cut(s)	601
Tru9I	TTAA	1 cut(s)	601
TseFI	GTSAC	2 cut(s)	373, 412
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	2 cut(s)	373, 412
TspDTI	ATGAA	3 cut(s)	98, 222, 287
TspGWI	ACGGA	1 cut(s)	120
XapI	RAATTY	1 cut(s)	502
XceI	RCATGY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	358
XspI	CTAG	2 cut(s)	134, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.