Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017000

Physical Location & Seq

Genomic Coordinates Forward (+)

65456786 .. 65467105

Gene Structure 10320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCCAAGTGCGAAATCGCCGGTACAAGTTCATTTCGGTCTTCTCTAACAAACCCTAAAGCGGCCATCAAAGGTTTATTTACGAAATTGAAAGGTTCGGGTTCCGGTACAAAGGGTTCGGGGGCCTTCAAGGGACTAGGGGACTTTTTGGAGGAGTTGGACTCGGATTCGGAATATGAGTCGGAGAGTGAGGTGGTTGAGCCGGCTAATGAAGACGAGCTGGCTTTTTCGAAATTAGGCTTGCCTCGGCGGCTTGTGGATAGCCTTGAGAGGCATGGCTTTTCTTCCCGTTTTCCCATTCATTCGGAAAACCAATCTGAATCCCAAGGAAGTTGGGGATATTGTTCTAGGTACCGTGTTGGCTCCAGGTCTCAAAGAGCTAGCAAATGCGGGATAGCTGCTTCTATAAGATCTACATCAGTTATGACATTGGCAAAGAGAGACCCAACTCCATTGCACCGGGCAGCTAGGGTACTAATAAATTCTCAAATGGCAAATGGAGATTTTCCCAGAAGAGGCCTGTGGAGTAAAGGAACTAGAGCGGATGAGAAAATGAAACCTGATATGCCTCTTGATTATACGGTTTTCCAATTGTCACCCAAGCATTCAAGTGGTCTAGTTAGCATCCTCATAGCTAAACCAAACACAACACTCGTATTAGAAAATGGTTCCACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

226

Amino Acids

24.56

Weight (kDa)

9.28

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017000)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821
rosa_roxburghii	Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730
rosa_rugosa	Rorug02G0307200
rosa_samantha	Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	542
AciI	CCGC	4 cut(s)	62, 250, 390, 542
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	481
AfaI	GTAC	4 cut(s)	25, 109, 353, 474
AfiI	CCNNNNNNNGG	2 cut(s)	61, 515
AgsI	TTSAA	3 cut(s)	91, 130, 609
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	5 cut(s)	220, 380, 398, 467, 635
AluI	AGCT	5 cut(s)	220, 380, 398, 467, 635
Alw26I	GTCTC	2 cut(s)	375, 435
AoxI	GGCC	3 cut(s)	63, 123, 517
ApeKI	GCWGC	2 cut(s)	398, 464
ApoI	RAATTY	1 cut(s)	481
Asp718I	GGTACC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	588
AsuII	TTCGAA	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	351
BbsI	GAAGAC	2 cut(s)	33, 219
BbvI	GCAGC	2 cut(s)	385, 476
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	375, 435
BfaI	CTAG	6 cut(s)	137, 348, 381, 468, 537, 617
BglI	GCCNNNNNGGC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	4 cut(s)	63, 251, 399, 465
BlsI	GCNGC	4 cut(s)	64, 252, 400, 466
Bme1390I	CCNGG	2 cut(s)	367, 461
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	5 cut(s)	103, 124, 353, 364, 670
BmrFI	CCNGG	2 cut(s)	367, 461
BmsI	GCATC	1 cut(s)	633
BmtI	GCTAGC	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	33, 219
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	1 cut(s)	349
Bpu14I	TTCGAA	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	415
BsaI	GGTCTC	2 cut(s)	375, 435
BsaJI	CCNNGG	2 cut(s)	245, 325
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 515
Bse118I	RCCGGY	2 cut(s)	20, 202
Bse3DI	GCAATG	1 cut(s)	452
Bse8I	GATNNNNATC	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	245, 325
BseGI	GGATG	2 cut(s)	550, 624
BseJI	GATNNNNATC	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	61, 515
BseMI	GCAATG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	385, 476
BshFI	GGCC	3 cut(s)	65, 125, 519
BshNI	GGYRCC	1 cut(s)	351
BsiSI	CCGG	4 cut(s)	21, 105, 203, 460
BslFI	GGGAC	2 cut(s)	147, 155
BslI	CCNNNNNNNGG	2 cut(s)	61, 515
BsmAI	GTCTC	2 cut(s)	375, 435
BsmFI	GGGAC	2 cut(s)	147, 155
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	3 cut(s)	65, 125, 519
Bso31I	GGTCTC	2 cut(s)	375, 435
Bsp119I	TTCGAA	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	410
BspACI	CCGC	4 cut(s)	62, 250, 390, 542
BspANI	GGCC	3 cut(s)	65, 125, 519
BspLI	GGNNCC	5 cut(s)	103, 124, 353, 364, 670
BspOI	GCTAGC	1 cut(s)	384
BspT104I	TTCGAA	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	351
BspTNI	GGTCTC	2 cut(s)	375, 435
BsrBI	CCGCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	20, 202
BssAI	RCCGGY	2 cut(s)	20, 202
BssECI	CCNNGG	2 cut(s)	245, 325
BssMI	GATC	1 cut(s)	410
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	356, 583
Bst6I	CTCTTC	1 cut(s)	508
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	4 cut(s)	204, 222, 242, 382
BstF5I	GGATG	2 cut(s)	550, 624
BstKTI	GATC	1 cut(s)	413
BstMAI	GTCTC	2 cut(s)	375, 435
BstMBI	GATC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	365, 459
BstV1I	GCAGC	2 cut(s)	385, 476
BstV2I	GAAGAC	2 cut(s)	33, 219
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	65, 125, 519
BtsCI	GGATG	2 cut(s)	550, 624
Cac8I	GCNNGC	4 cut(s)	204, 222, 242, 382
Cfr10I	RCCGGY	2 cut(s)	20, 202
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	4 cut(s)	24, 108, 352, 473
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	4 cut(s)	24, 108, 352, 473
DpnI	GATC	1 cut(s)	412
DpnII	GATC	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	519
Eco31I	GGTCTC	2 cut(s)	375, 435
EcoO109I	RGGNCCY	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	1 cut(s)	278
FaiI	YATR	8 cut(s)	177, 276, 407, 425, 566, 579, 632, 679
FaqI	GGGAC	2 cut(s)	147, 155
FatI	CATG	1 cut(s)	274
FauI	CCCGC	1 cut(s)	383
Fnu4HI	GCNGC	4 cut(s)	63, 251, 399, 465
FokI	GGATG	2 cut(s)	557, 611
Fsp4HI	GCNGC	4 cut(s)	63, 251, 399, 465
FspBI	CTAG	6 cut(s)	137, 348, 381, 468, 537, 617
GluI	GCNGC	4 cut(s)	63, 251, 399, 465
GsuI	CTGGAG	1 cut(s)	349
HaeIII	GGCC	3 cut(s)	65, 125, 519
HapII	CCGG	4 cut(s)	21, 105, 203, 460
Hin1II	CATG	1 cut(s)	278
HinfI	GANTC	4 cut(s)	161, 167, 179, 320
HpaII	CCGG	4 cut(s)	21, 105, 203, 460
HphI	GGTGA	1 cut(s)	588
Hpy188I	TCNGA	5 cut(s)	166, 172, 184, 307, 319
Hpy188III	TCNNGA	1 cut(s)	572
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	356, 583
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	278
KpnI	GGTACC	1 cut(s)	355
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	410
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	2 cut(s)	385, 476
LweI	GCATC	1 cut(s)	633
MaeI	CTAG	6 cut(s)	137, 348, 381, 468, 537, 617
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	1 cut(s)	412
MbiI	CCGCTC	1 cut(s)	542
MboI	GATC	1 cut(s)	410
MboII	GAAGA	4 cut(s)	33, 224, 276, 525
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	1 cut(s)	410
MluCI	AATT	4 cut(s)	86, 233, 481, 590
MlyI	GAGTC	2 cut(s)	155, 188
MmeI	TCCRAC	2 cut(s)	138, 162
MnlI	CCTC	7 cut(s)	145, 184, 255, 264, 509, 579, 638
MroNI	GCCGGC	1 cut(s)	202
MslI	CAYNNNNRTG	1 cut(s)	609
MspI	CCGG	4 cut(s)	21, 105, 203, 460
MspR9I	CCNGG	2 cut(s)	367, 461
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	250
NaeI	GCCGGC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	1 cut(s)	410
NgoMIV	GCCGGC	1 cut(s)	202
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	5 cut(s)	103, 124, 353, 364, 670
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	594
NspV	TTCGAA	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	519
PctI	GAATGC	1 cut(s)	604
PdiI	GCCGGC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	167, 320
PkrI	GCNGC	4 cut(s)	64, 252, 400, 466
PleI	GAGTC	2 cut(s)	155, 187
PpsI	GAGTC	2 cut(s)	155, 187
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	5 cut(s)	103, 124, 353, 364, 670
PspPI	GGNCC	1 cut(s)	123
PsrI	GAACNNNNNNTAC	2 cut(s)	100, 132
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	4 cut(s)	25, 109, 353, 474
RsaNI	GTAC	4 cut(s)	24, 108, 352, 473
RseI	CAYNNNNRTG	1 cut(s)	609
SatI	GCNGC	4 cut(s)	63, 251, 399, 465
Sau3AI	GATC	1 cut(s)	410
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	2 cut(s)	155, 188
ScrFI	CCNGG	2 cut(s)	367, 461
SfaNI	GCATC	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	4 cut(s)	86, 233, 481, 590
SseBI	AGGCCT	1 cut(s)	519
SsiI	CCGC	4 cut(s)	62, 250, 390, 542
SspMI	CTAG	6 cut(s)	137, 348, 381, 468, 537, 617
StuI	AGGCCT	1 cut(s)	519
StyD4I	CCNGG	2 cut(s)	365, 459
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	356, 583
TaqI	TCGA	1 cut(s)	230
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	86, 233, 481, 590
TauI	GCSGC	2 cut(s)	65, 253
TfiI	GAWTC	2 cut(s)	167, 320
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	2 cut(s)	398, 464
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	4 cut(s)	21, 225, 290, 569
XapI	RAATTY	1 cut(s)	481
XspI	CTAG	6 cut(s)	137, 348, 381, 468, 537, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.