DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0415481 RchiOBHm_Chr5g0048821 |
| rosa_roxburghii | Rroxscaffold_1G00024610 Rroxscaffold_3G00242260 Rroxscaffold_3G00273780 Rroxscaffold_4G00295920 Rroxscaffold_7G00175730 |
| rosa_rugosa | Rorug02G0307200 |
| rosa_samantha | Rh4DG264700 Rh5AG385300 Rh5BG552400 Rh5CG347300 Rh5CG575000 Rh7CG398100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 118 |
| AccIII | TCCGGA | 1 cut(s) | 46 |
| AcyI | GRCGYC | 1 cut(s) | 119 |
| AgsI | TTSAA | 1 cut(s) | 70 |
| Alw21I | GWGCWC | 1 cut(s) | 135 |
| Aor13HI | TCCGGA | 1 cut(s) | 46 |
| AoxI | GGCC | 1 cut(s) | 144 |
| ApeKI | GCWGC | 1 cut(s) | 101 |
| AspLEI | GCGC | 1 cut(s) | 121 |
| BanI | GGYRCC | 1 cut(s) | 118 |
| BanII | GRGCYC | 1 cut(s) | 64 |
| Bbv12I | GWGCWC | 1 cut(s) | 135 |
| BbvI | GCAGC | 1 cut(s) | 88 |
| BccI | CCATC | 1 cut(s) | 31 |
| BceAI | ACGGC | 2 cut(s) | 40, 132 |
| BfaI | CTAG | 1 cut(s) | 151 |
| BfoI | RGCGCY | 1 cut(s) | 122 |
| BisI | GCNGC | 1 cut(s) | 102 |
| BlsI | GCNGC | 1 cut(s) | 103 |
| BmiI | GGNNCC | 1 cut(s) | 120 |
| Bpu10I | CCTNAGC | 1 cut(s) | 105 |
| BsaHI | GRCGYC | 1 cut(s) | 119 |
| BsaWI | WCCGGW | 1 cut(s) | 46 |
| BseAI | TCCGGA | 1 cut(s) | 46 |
| BseMII | CTCAG | 2 cut(s) | 119, 148 |
| BseXI | GCAGC | 1 cut(s) | 88 |
| BshFI | GGCC | 1 cut(s) | 146 |
| BshNI | GGYRCC | 1 cut(s) | 118 |
| BsiHKAI | GWGCWC | 1 cut(s) | 135 |
| BsiSI | CCGG | 1 cut(s) | 47 |
| BsnI | GGCC | 1 cut(s) | 146 |
| Bsp1286I | GDGCHC | 2 cut(s) | 64, 135 |
| Bsp13I | TCCGGA | 1 cut(s) | 46 |
| BspANI | GGCC | 1 cut(s) | 146 |
| BspCNI | CTCAG | 2 cut(s) | 118, 147 |
| BspEI | TCCGGA | 1 cut(s) | 46 |
| BspLI | GGNNCC | 1 cut(s) | 120 |
| BspT107I | GGYRCC | 1 cut(s) | 118 |
| BssNI | GRCGYC | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 1 cut(s) | 74 |
| Bst6I | CTCTTC | 1 cut(s) | 135 |
| BstACI | GRCGYC | 1 cut(s) | 119 |
| BstDEI | CTNAG | 2 cut(s) | 105, 134 |
| BstH2I | RGCGCY | 1 cut(s) | 122 |
| BstHHI | GCGC | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 107, 116 |
| BstV1I | GCAGC | 1 cut(s) | 88 |
| BsuRI | GGCC | 1 cut(s) | 146 |
| BtgZI | GCGATG | 1 cut(s) | 42 |
| BtsIMutI | CAGTG | 2 cut(s) | 79, 142 |
| CfoI | GCGC | 1 cut(s) | 121 |
| CviJI | RGCY | 2 cut(s) | 62, 146 |
| CviKI_1 | RGCY | 2 cut(s) | 62, 146 |
| DdeI | CTNAG | 2 cut(s) | 105, 134 |
| DinI | GGCGCC | 1 cut(s) | 120 |
| Eam1104I | CTCTTC | 1 cut(s) | 135 |
| EarI | CTCTTC | 1 cut(s) | 135 |
| Eco147I | AGGCCT | 1 cut(s) | 146 |
| Eco24I | GRGCYC | 1 cut(s) | 64 |
| EcoT38I | GRGCYC | 1 cut(s) | 64 |
| EgeI | GGCGCC | 1 cut(s) | 120 |
| EheI | GGCGCC | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 1 cut(s) | 102 |
| FriOI | GRGCYC | 1 cut(s) | 64 |
| Fsp4HI | GCNGC | 1 cut(s) | 102 |
| FspBI | CTAG | 1 cut(s) | 151 |
| GlaI | GCGC | 1 cut(s) | 120 |
| GluI | GCNGC | 1 cut(s) | 102 |
| HaeII | RGCGCY | 1 cut(s) | 122 |
| HaeIII | GGCC | 1 cut(s) | 146 |
| HapII | CCGG | 1 cut(s) | 47 |
| HhaI | GCGC | 1 cut(s) | 121 |
| Hin1I | GRCGYC | 1 cut(s) | 119 |
| Hin6I | GCGC | 1 cut(s) | 119 |
| HinP1I | GCGC | 1 cut(s) | 119 |
| HpaII | CCGG | 1 cut(s) | 47 |
| Hpy188III | TCNNGA | 1 cut(s) | 47 |
| HpyCH4III | ACNGT | 1 cut(s) | 74 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 107, 116 |
| HpyF3I | CTNAG | 2 cut(s) | 105, 134 |
| Hsp92I | GRCGYC | 1 cut(s) | 119 |
| HspAI | GCGC | 1 cut(s) | 119 |
| KasI | GGCGCC | 1 cut(s) | 118 |
| Kpn2I | TCCGGA | 1 cut(s) | 46 |
| LpnPI | CCDG | 2 cut(s) | 60, 92 |
| Lsp1109I | GCAGC | 1 cut(s) | 88 |
| MaeI | CTAG | 1 cut(s) | 151 |
| MboII | GAAGA | 1 cut(s) | 152 |
| MhlI | GDGCHC | 2 cut(s) | 64, 135 |
| MluCI | AATT | 1 cut(s) | 124 |
| Mly113I | GGCGCC | 1 cut(s) | 119 |
| MnlI | CCTC | 3 cut(s) | 45, 51, 136 |
| MroI | TCCGGA | 1 cut(s) | 46 |
| MspI | CCGG | 1 cut(s) | 47 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 107, 116 |
| NarI | GGCGCC | 1 cut(s) | 119 |
| NlaIV | GGNNCC | 1 cut(s) | 120 |
| PceI | AGGCCT | 1 cut(s) | 146 |
| PkrI | GCNGC | 1 cut(s) | 103 |
| PluTI | GGCGCC | 1 cut(s) | 122 |
| PspN4I | GGNNCC | 1 cut(s) | 120 |
| SatI | GCNGC | 1 cut(s) | 102 |
| SduI | GDGCHC | 2 cut(s) | 64, 135 |
| SfoI | GGCGCC | 1 cut(s) | 120 |
| SgeI | CNNG | 3 cut(s) | 24, 59, 119 |
| Sse9I | AATT | 1 cut(s) | 124 |
| SseBI | AGGCCT | 1 cut(s) | 146 |
| SspDI | GGCGCC | 1 cut(s) | 118 |
| SspMI | CTAG | 1 cut(s) | 151 |
| StuI | AGGCCT | 1 cut(s) | 146 |
| TaaI | ACNGT | 1 cut(s) | 74 |
| TaqI | TCGA | 1 cut(s) | 35 |
| TasI | AATT | 1 cut(s) | 124 |
| TscAI | CASTG | 2 cut(s) | 79, 142 |
| TseI | GCWGC | 1 cut(s) | 101 |
| TspRI | CASTG | 2 cut(s) | 79, 142 |
| XspI | CTAG | 1 cut(s) | 151 |