RchiOBHm_Chr4g0428831

Random slug protein 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011976
Physical Location & Seq
Forward (+)
53765715 .. 53768175
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39768

Sequence Viewer

Length: 609 bp
ATGATCCGGAGATTTCTTCGGGCTCGTGATCATGACATTGAGAAGGCTTCTAACCTCTTCCTCAAGTACCTGAGTTGGAGGAAAGCATTTATGCCAAATGGTTCCATCTCAGAGTCGGAGATTCCAAGAGAACTAGCTCATAACAAGTTGTTTATGCAAGGCGTGGACAAGACGGGGCGCCCCATTGTTGTTGTCTATGGTGGGAGGCATAAGCACACCAAGCTAGAGGAGTTTAAACGTTTTGTAGTCTACACTCTTGAGAAGATATGTGCCAGAATGCCAGCGGGGCAGGAAAAGTTTTTATCCATTGCAGATCTTGAAGGATGGGGGTATGCCAACAGTGATGTTCGTGGATACTTAGCAGCTCTAACAATCTTACAGGATTGCTATCCGGAGAGGCTTGGCAAGTTATTTATTGTCCATTCACCGTACCTATTCATGACTGCTTGGAAGATGGTTTATCCTTTTATCGATGACAAAACCAAAAAAAAGATCATTTTTGTTGAGAACAAAAAGCTGAACTCCACATTACTTGGTGATATTGATGAGAGCCAGCTACCGGATGTATATGGCGGCAAATTGCCATTAGTTCCGATCCAAGACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

202

Amino Acids

23.35

Weight (kDa)

9.23

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 47 - 192 6.9e-38 CRAL/TRIO domain
CRAL_TRIO_2 PF13716 59 - 172 5.5e-08 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01630
fragaria_vesca FvH4_4g22590
malus_domestica MD13G1131200.v1.1 MD16G1141400.v1.1
prunus_persica Prupe.1G214400_v2.0.a1
pyrus_communis pycom13g11450 pycom16g11190
rosa_chinensis RchiOBHm_Chr4g0428831
rosa_laevigata RLG00000007122
rosa_multiflora Rmu_sc0008612.1_g000001
rosa_roxburghii Rroxscaffold_5G00370510
rosa_rugosa Rorug04G0229300 Rorug04G0229400 Rorug04G0229500
rosa_samantha Rh4AG286200 Rh4BG292000 Rh4CG308000 Rh4DG289200
rosa_wichuraiana Rw4G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 249
AccIII TCCGGA 2 cut(s) 6, 391
AciI CCGC 2 cut(s) 284, 573
AclI AACGTT 1 cut(s) 238
AclWI GGATC 1 cut(s) 589
AcyI GRCGYC 1 cut(s) 178
AfaI GTAC 2 cut(s) 68, 431
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 1 cut(s) 320
AluBI AGCT 5 cut(s) 137, 223, 365, 517, 556
AluI AGCT 5 cut(s) 137, 223, 365, 517, 556
AlwI GGATC 1 cut(s) 589
Aor13HI TCCGGA 2 cut(s) 6, 391
ApeKI GCWGC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 417, 548
BanI GGYRCC 1 cut(s) 177
BanII GRGCYC 1 cut(s) 25
BauI CACGAG 1 cut(s) 24
BbvI GCAGC 1 cut(s) 374
BccI CCATC 3 cut(s) 113, 318, 448
BciVI GTATCC 1 cut(s) 347
BclI TGATCA 1 cut(s) 28
BfaI CTAG 2 cut(s) 134, 224
BfoI RGCGCY 1 cut(s) 181
BfuI GTATCC 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 286
BglII AGATCT 1 cut(s) 313
BisI GCNGC 2 cut(s) 363, 574
BlsI GCNGC 2 cut(s) 364, 575
BmiI GGNNCC 2 cut(s) 103, 179
BpuEI CTTGAG 2 cut(s) 47, 278
Bsa29I ATCGAT 1 cut(s) 471
BsaBI GATNNNNATC 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 178
BsaWI WCCGGW 3 cut(s) 6, 391, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse3DI GCAATG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 387
BseAI TCCGGA 2 cut(s) 6, 391
BseCI ATCGAT 1 cut(s) 471
BseGI GGATG 2 cut(s) 329, 568
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 62, 123
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 471
BsiSI CCGG 3 cut(s) 7, 392, 560
BslI CCNNNNNNNGG 1 cut(s) 559
BsmI GAATGC 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 25
Bsp13I TCCGGA 2 cut(s) 6, 391
Bsp143I GATC 5 cut(s) 3, 28, 313, 492, 594
BspACI CCGC 2 cut(s) 284, 573
BspCNI CTCAG 2 cut(s) 63, 122
BspDI ATCGAT 1 cut(s) 471
BspEI TCCGGA 2 cut(s) 6, 391
BspHI TCATGA 2 cut(s) 31, 438
BspLI GGNNCC 2 cut(s) 103, 179
BspPI GGATC 1 cut(s) 589
BspT107I GGYRCC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 306
BssMI GATC 5 cut(s) 3, 28, 313, 492, 594
BssNI GRCGYC 1 cut(s) 178
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 341, 429
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 282, 554
BstDEI CTNAG 3 cut(s) 71, 109, 358
BstF5I GGATG 2 cut(s) 329, 568
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 5 cut(s) 6, 31, 316, 495, 597
BstMBI GATC 5 cut(s) 3, 28, 313, 492, 594
BstMWI GCNNNNNNNGC 2 cut(s) 220, 286
BstV1I GCAGC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
Bsu15I ATCGAT 1 cut(s) 471
BsuI GTATCC 1 cut(s) 347
BsuTUI ATCGAT 1 cut(s) 471
BtsCI GGATG 2 cut(s) 329, 568
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 282, 554
CciI TCATGA 2 cut(s) 31, 438
CfoI GCGC 1 cut(s) 180
ClaI ATCGAT 1 cut(s) 471
Csp6I GTAC 2 cut(s) 67, 430
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 2 cut(s) 32, 439
CviJI RGCY 9 cut(s) 23, 47, 137, 223, 365, 400, 517, 552, 556
CviKI_1 RGCY 9 cut(s) 23, 47, 137, 223, 365, 400, 517, 552, 556
CviQI GTAC 2 cut(s) 67, 430
DdeI CTNAG 3 cut(s) 71, 109, 358
DinI GGCGCC 1 cut(s) 179
DpnI GATC 5 cut(s) 5, 30, 315, 494, 596
DpnII GATC 5 cut(s) 3, 28, 313, 492, 594
DraI TTTAAA 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 25
EgeI GGCGCC 1 cut(s) 179
EheI GGCGCC 1 cut(s) 179
FaeI CATG 2 cut(s) 35, 442
FatI CATG 2 cut(s) 31, 438
FauI CCCGC 1 cut(s) 277
FbaI TGATCA 1 cut(s) 28
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 363, 574
FokI GGATG 2 cut(s) 336, 575
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 363, 574
FspBI CTAG 2 cut(s) 134, 224
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 363, 574
HaeII RGCGCY 1 cut(s) 181
HapII CCGG 3 cut(s) 7, 392, 560
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 2 cut(s) 35, 442
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 2 cut(s) 113, 121
HpaII CCGG 3 cut(s) 7, 392, 560
HphI GGTGA 2 cut(s) 417, 548
Hpy166II GTNNAC 2 cut(s) 166, 250
Hpy188I TCNGA 3 cut(s) 112, 118, 594
Hpy188III TCNNGA 7 cut(s) 7, 26, 32, 257, 317, 392, 439
Hpy8I GTNNAC 2 cut(s) 166, 250
HpyAV CCTTC 2 cut(s) 37, 314
HpyCH4III ACNGT 2 cut(s) 341, 429
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 157, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 286
HpyF3I CTNAG 3 cut(s) 71, 109, 358
HpySE526I ACGT 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 2 cut(s) 35, 442
HspAI GCGC 1 cut(s) 178
KasI GGCGCC 1 cut(s) 177
Kpn2I TCCGGA 2 cut(s) 6, 391
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 5 cut(s) 3, 28, 313, 492, 594
LpnPI CCDG 9 cut(s) 20, 83, 275, 286, 294, 365, 405, 566, 573
Lsp1109I GCAGC 1 cut(s) 374
MaeI CTAG 2 cut(s) 134, 224
MaeII ACGT 1 cut(s) 238
MalI GATC 5 cut(s) 5, 30, 315, 494, 596
MboI GATC 5 cut(s) 3, 28, 313, 492, 594
MboII GAAGA 4 cut(s) 8, 49, 274, 463
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 1 cut(s) 578
Mly113I GGCGCC 1 cut(s) 178
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 2 cut(s) 56, 96
MnlI CCTC 6 cut(s) 65, 71, 72, 198, 220, 390
MroI TCCGGA 2 cut(s) 6, 391
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 3 cut(s) 7, 392, 560
MssI GTTTAAAC 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 220, 286
NarI GGCGCC 1 cut(s) 178
NdeII GATC 5 cut(s) 3, 28, 313, 492, 594
NlaIII CATG 2 cut(s) 35, 442
NlaIV GGNNCC 2 cut(s) 103, 179
PagI TCATGA 2 cut(s) 31, 438
PctI GAATGC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 2 cut(s) 364, 575
PleI GAGTC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 181
PmeI GTTTAAAC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 121
Psp1406I AACGTT 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 103, 179
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 2 cut(s) 68, 431
RsaNI GTAC 2 cut(s) 67, 430
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 363, 574
Sau3AI GATC 5 cut(s) 3, 28, 313, 492, 594
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 25
SetI ASST 9 cut(s) 57, 72, 139, 225, 241, 367, 435, 519, 558
SfoI GGCGCC 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 62, 257
SmoI CTYRAG 2 cut(s) 62, 257
Sse9I AATT 1 cut(s) 578
SsiI CCGC 2 cut(s) 284, 573
SspDI GGCGCC 1 cut(s) 177
SspMI CTAG 2 cut(s) 134, 224
TaaI ACNGT 2 cut(s) 341, 429
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 471
TasI AATT 1 cut(s) 578
TauI GCSGC 1 cut(s) 576
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 346
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 427
TspRI CASTG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 2 cut(s) 134, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.