Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011976

Physical Location & Seq

Genomic Coordinates Reverse (-)

13747734 .. 13750019

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAATCCAATGGGAAAGATGAGGGAATGGAAGAGCAACAGAGCTTGGAAAGCAGTGAGATTGAGAAAAACAAAGTGGGGATAATGAGAGCCCTTGTGGAAAGAGAAGATCCCTCCGCCAAGGAAGTGGATGATTTCATGATCCGGAGATTTCTTCGGGCTCGTGATCTTGACATTGAGAAGGCTTCTAACCTCTTCCTCAAGTACCTGAGTTGGAGGAAAGCATTTATGCCAAATGGTTCCATCTCAGAGTCGGAGATTCCAAGAGAACTAGCTCATAACAAGTTGTTTATGCAAGGCGTGGACAAGAAGGGGCGCCCCATTGTTGTTGTCTATGGTGGGAGGCATAAGCACACCAAACTAGAGGAGTTTAAACGTTTTGTAGTCTACACTCTTGAGAAGATATGTGCCAGAATGCCAGCGGGGCAGGAAAAGTTTTTATCCATTGCAGATCTTGAGGGATGGGGGTATGCCAATAGTGATGTTCGTGGATACTTAGCAGCTCTAACAATCTTACAGGATTGCTATCCGGAGAGGCTTGGCAAGTTATTTATTGTCCATTCACCGTACCTATTCATGACTGCTTGGAAGATGGTTTACCCTTTTATCGATGACAAAACCAAAAAAAAGATCATTTTTGTTGAGAACAAAAAGCTGCACTCCACATTACTCAGTGATATTGATGAGAGCCAGCTACCGGATACATATGGCGGCAAATTGCCATTAGTTCCGATCCAAGACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

249

Amino Acids

28.6

Weight (kDa)

6.97

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	93 - 238	2.6e-39	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	105 - 239	9.9e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01630
fragaria_vesca	FvH4_4g22590
malus_domestica	MD13G1131200.v1.1 MD16G1141400.v1.1
prunus_persica	Prupe.1G214400_v2.0.a1
pyrus_communis	pycom13g11450 pycom16g11190
rosa_chinensis	RchiOBHm_Chr4g0428831
rosa_laevigata	RLG00000007122
rosa_multiflora	Rmu_sc0008612.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370510
rosa_rugosa	Rorug04G0229300 Rorug04G0229400 Rorug04G0229500
rosa_samantha	Rh4AG286200 Rh4BG292000 Rh4CG308000 Rh4DG289200
rosa_wichuraiana	Rw4G024810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	387
AccIII	TCCGGA	2 cut(s)	144, 529
AciI	CCGC	3 cut(s)	117, 422, 711
AclI	AACGTT	1 cut(s)	376
AclWI	GGATC	3 cut(s)	104, 136, 727
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	206, 569
AfiI	CCNNNNNNNGG	1 cut(s)	697
AluBI	AGCT	5 cut(s)	45, 275, 503, 655, 694
AluI	AGCT	5 cut(s)	45, 275, 503, 655, 694
AlwI	GGATC	3 cut(s)	104, 136, 727
Aor13HI	TCCGGA	2 cut(s)	144, 529
ApeKI	GCWGC	2 cut(s)	500, 655
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	2 cut(s)	94, 163
BarI	GAAGNNNNNNTAC	2 cut(s)	581, 613
BauI	CACGAG	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	512, 642
BccI	CCATC	3 cut(s)	251, 456, 586
BciVI	GTATCC	2 cut(s)	485, 694
BfaI	CTAG	2 cut(s)	272, 362
BfoI	RGCGCY	1 cut(s)	319
BfuI	GTATCC	2 cut(s)	485, 694
BglI	GCCNNNNNGGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	3 cut(s)	501, 656, 712
BlsI	GCNGC	3 cut(s)	502, 657, 713
BmiI	GGNNCC	2 cut(s)	241, 317
BpuEI	CTTGAG	3 cut(s)	185, 416, 476
Bsa29I	ATCGAT	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	3 cut(s)	144, 529, 697
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	525
BseAI	TCCGGA	2 cut(s)	144, 529
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	136, 467
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	3 cut(s)	200, 261, 685
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	512, 642
BsgI	GTGCAG	1 cut(s)	641
BshNI	GGYRCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	609
BsiSI	CCGG	3 cut(s)	145, 530, 698
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	94, 163
Bsp13I	TCCGGA	2 cut(s)	144, 529
Bsp143I	GATC	6 cut(s)	109, 141, 166, 451, 630, 732
BspACI	CCGC	3 cut(s)	117, 422, 711
BspCNI	CTCAG	3 cut(s)	201, 260, 684
BspDI	ATCGAT	1 cut(s)	609
BspEI	TCCGGA	2 cut(s)	144, 529
BspHI	TCATGA	2 cut(s)	138, 576
BspLI	GGNNCC	2 cut(s)	241, 317
BspPI	GGATC	3 cut(s)	104, 136, 727
BspQI	GCTCTTC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	6 cut(s)	109, 141, 166, 451, 630, 732
BssNI	GRCGYC	1 cut(s)	316
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	567
Bst6I	CTCTTC	2 cut(s)	27, 200
BstACI	GRCGYC	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	420, 692
BstDEI	CTNAG	4 cut(s)	209, 247, 496, 671
BstF5I	GGATG	2 cut(s)	136, 467
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	6 cut(s)	112, 144, 169, 454, 633, 735
BstMBI	GATC	6 cut(s)	109, 141, 166, 451, 630, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 424
BstV1I	GCAGC	2 cut(s)	512, 642
BstX2I	RGATCY	2 cut(s)	109, 451
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	2 cut(s)	109, 451
Bsu15I	ATCGAT	1 cut(s)	609
BsuI	GTATCC	2 cut(s)	485, 694
BsuTUI	ATCGAT	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	136, 467
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	61, 679
Cac8I	GCNNGC	2 cut(s)	420, 692
CciI	TCATGA	2 cut(s)	138, 576
CfoI	GCGC	1 cut(s)	318
ClaI	ATCGAT	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	205, 568
CviAII	CATG	2 cut(s)	139, 577
CviQI	GTAC	2 cut(s)	205, 568
DdeI	CTNAG	4 cut(s)	209, 247, 496, 671
DinI	GGCGCC	1 cut(s)	317
DpnI	GATC	6 cut(s)	111, 143, 168, 453, 632, 734
DpnII	GATC	6 cut(s)	109, 141, 166, 451, 630, 732
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	27, 200
EarI	CTCTTC	2 cut(s)	27, 200
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	2 cut(s)	94, 163
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	2 cut(s)	94, 163
EgeI	GGCGCC	1 cut(s)	317
EheI	GGCGCC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	142, 580
FatI	CATG	2 cut(s)	138, 576
FauI	CCCGC	1 cut(s)	415
FauNDI	CATATG	1 cut(s)	706
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	501, 656, 712
FokI	GGATG	2 cut(s)	143, 474
FriOI	GRGCYC	2 cut(s)	94, 163
Fsp4HI	GCNGC	3 cut(s)	501, 656, 712
FspBI	CTAG	2 cut(s)	272, 362
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	3 cut(s)	501, 656, 712
HaeII	RGCGCY	1 cut(s)	319
HapII	CCGG	3 cut(s)	145, 530, 698
HhaI	GCGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	142, 580
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	5, 251, 259
HpaII	CCGG	3 cut(s)	145, 530, 698
HphI	GGTGA	1 cut(s)	555
Hpy166II	GTNNAC	3 cut(s)	304, 388, 598
Hpy188I	TCNGA	3 cut(s)	250, 256, 732
Hpy188III	TCNNGA	8 cut(s)	139, 145, 164, 170, 395, 455, 530, 577
Hpy8I	GTNNAC	3 cut(s)	304, 388, 598
HpyAV	CCTTC	2 cut(s)	175, 304
HpyCH4III	ACNGT	1 cut(s)	567
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	3 cut(s)	295, 449, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 424
HpyF3I	CTNAG	4 cut(s)	209, 247, 496, 671
HpySE526I	ACGT	1 cut(s)	376
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	142, 580
HspAI	GCGC	1 cut(s)	316
KasI	GGCGCC	1 cut(s)	315
Kpn2I	TCCGGA	2 cut(s)	144, 529
Kzo9I	GATC	6 cut(s)	109, 141, 166, 451, 630, 732
LguI	GCTCTTC	1 cut(s)	27
LpnPI	CCDG	9 cut(s)	158, 221, 413, 424, 432, 503, 543, 704, 711
Lsp1109I	GCAGC	2 cut(s)	512, 642
MaeI	CTAG	2 cut(s)	272, 362
MaeII	ACGT	1 cut(s)	376
MalI	GATC	6 cut(s)	111, 143, 168, 453, 632, 734
MboI	GATC	6 cut(s)	109, 141, 166, 451, 630, 732
MboII	GAAGA	6 cut(s)	44, 119, 146, 187, 412, 601
MflI	RGATCY	2 cut(s)	109, 451
MhlI	GDGCHC	2 cut(s)	94, 163
MluCI	AATT	1 cut(s)	716
Mly113I	GGCGCC	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	2 cut(s)	194, 234
MnlI	CCTC	9 cut(s)	16, 124, 203, 209, 210, 336, 358, 451, 528
MroI	TCCGGA	2 cut(s)	144, 529
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	3 cut(s)	145, 530, 698
MssI	GTTTAAAC	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	420
MwoI	GCNNNNNNNGC	2 cut(s)	51, 424
NarI	GGCGCC	1 cut(s)	316
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	6 cut(s)	109, 141, 166, 451, 630, 732
NlaIII	CATG	2 cut(s)	142, 580
NlaIV	GGNNCC	2 cut(s)	241, 317
PagI	TCATGA	2 cut(s)	138, 576
PciSI	GCTCTTC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	5, 259
PkrI	GCNGC	3 cut(s)	502, 657, 713
PleI	GAGTC	1 cut(s)	259
PluTI	GGCGCC	1 cut(s)	319
PmeI	GTTTAAAC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	259
Psp1406I	AACGTT	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	241, 317
PsuI	RGATCY	2 cut(s)	109, 451
RsaI	GTAC	2 cut(s)	206, 569
RsaNI	GTAC	2 cut(s)	205, 568
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	501, 656, 712
Sau3AI	GATC	6 cut(s)	109, 141, 166, 451, 630, 732
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	94, 163
SetI	ASST	9 cut(s)	47, 195, 210, 277, 379, 505, 573, 657, 696
SfoI	GGCGCC	1 cut(s)	317
SmlI	CTYRAG	3 cut(s)	200, 395, 455
SmoI	CTYRAG	3 cut(s)	200, 395, 455
Sse9I	AATT	1 cut(s)	716
SsiI	CCGC	3 cut(s)	117, 422, 711
SspDI	GGCGCC	1 cut(s)	315
SspMI	CTAG	2 cut(s)	272, 362
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	567
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	609
TasI	AATT	1 cut(s)	716
TauI	GCSGC	1 cut(s)	714
TfiI	GAWTC	2 cut(s)	5, 259
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	61, 679
TseI	GCWGC	2 cut(s)	500, 655
TspDTI	ATGAA	2 cut(s)	127, 565
TspRI	CASTG	2 cut(s)	61, 679
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	2 cut(s)	272, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.