Rh4DG289200

Random slug protein 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011976
Physical Location & Seq
Forward (+)
51051830 .. 51053798
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG289200.1

Sequence Viewer

Length: 633 bp
ATGGTTAAAGAAGTGGATGATTTCATGATCCGGAGATTTCTTCGGGCTCGTGATCATGACATTGAGAAGGCTTCTAACCTCTTCCTCAAGTACCTGAGTTGGAGGAAAGCATTTATGCCAAATGGTTCCATCTCAGAGTCGGAGATTCCAAGAGAACTAGCTCATAACAAGTTGTTTATGCAAGGCGTGGACAAGACGGGGCGCCCCATTGTTGTTGTCTATGGTGGGAGGCATAAGCACACCAAGCTAGAGGAGTTTAAACGTTTTGTAGTCTACACTCTTGAGAAGATATGTGCCAGAATGCCAGCGGGGCAGGAAAAGTTTTTATCCATTGCAGATATTGAAGGATGGGGGTATGCCAACAGTGATGTTCGTGGATACTTAGCAGCTCTAACAATCTTACAGGATTGCTATCCGGAGAGGCTTGGCAAGTTATTTATTGTCCATTCACCGTACCTATTCATGACTGCTTGGAAGATGGTTTACCCTTTTATCGATGACAAAACCAAAAAAAAGATCATTTTTGTTGAGAACAAAAAGCTGAACTCCACATTACTTGGTGATATTGATGAGAGCCAGCTACCGGATGTATACGGCGGCAAATTGCCATTAGTTCCGATCCAAGACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

210

Amino Acids

24.31

Weight (kDa)

8.98

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 55 - 200 1.6e-37 CRAL/TRIO domain
CRAL_TRIO_2 PF13716 67 - 180 6.4e-08 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01630
fragaria_vesca FvH4_4g22590
malus_domestica MD13G1131200.v1.1 MD16G1141400.v1.1
prunus_persica Prupe.1G214400_v2.0.a1
pyrus_communis pycom13g11450 pycom16g11190
rosa_chinensis RchiOBHm_Chr4g0428831
rosa_laevigata RLG00000007122
rosa_multiflora Rmu_sc0008612.1_g000001
rosa_roxburghii Rroxscaffold_5G00370510
rosa_rugosa Rorug04G0229300 Rorug04G0229400 Rorug04G0229500
rosa_samantha Rh4AG286200 Rh4BG292000 Rh4CG308000 Rh4DG289200
rosa_wichuraiana Rw4G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 201
AccI GTMKAC 2 cut(s) 273, 591
AccIII TCCGGA 2 cut(s) 30, 415
AciI CCGC 2 cut(s) 308, 597
AclI AACGTT 1 cut(s) 262
AclWI GGATC 2 cut(s) 22, 613
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 2 cut(s) 92, 455
AfiI CCNNNNNNNGG 1 cut(s) 583
AgsI TTSAA 1 cut(s) 344
AluBI AGCT 5 cut(s) 161, 247, 389, 541, 580
AluI AGCT 5 cut(s) 161, 247, 389, 541, 580
AlwI GGATC 2 cut(s) 22, 613
Aor13HI TCCGGA 2 cut(s) 30, 415
ApeKI GCWGC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 441, 572
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 49
BarI GAAGNNNNNNTAC 2 cut(s) 467, 499
BauI CACGAG 1 cut(s) 48
BbvI GCAGC 1 cut(s) 398
BccI CCATC 3 cut(s) 137, 342, 472
BceAI ACGGC 1 cut(s) 610
BciVI GTATCC 1 cut(s) 371
BclI TGATCA 1 cut(s) 52
BfaI CTAG 2 cut(s) 158, 248
BfoI RGCGCY 1 cut(s) 205
BfuI GTATCC 1 cut(s) 371
BglI GCCNNNNNGGC 1 cut(s) 310
BisI GCNGC 2 cut(s) 387, 598
BlsI GCNGC 2 cut(s) 388, 599
BmiI GGNNCC 2 cut(s) 127, 203
BpuEI CTTGAG 2 cut(s) 71, 302
Bsa29I ATCGAT 1 cut(s) 495
BsaBI GATNNNNATC 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 202
BsaWI WCCGGW 3 cut(s) 30, 415, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 411
BseAI TCCGGA 2 cut(s) 30, 415
BseCI ATCGAT 1 cut(s) 495
BseGI GGATG 3 cut(s) 22, 353, 592
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 86, 147
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 398
BshNI GGYRCC 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 495
BsiSI CCGG 3 cut(s) 31, 416, 584
BslI CCNNNNNNNGG 1 cut(s) 583
BsmI GAATGC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 49
Bsp13I TCCGGA 2 cut(s) 30, 415
Bsp143I GATC 4 cut(s) 27, 52, 516, 618
BspACI CCGC 2 cut(s) 308, 597
BspCNI CTCAG 2 cut(s) 87, 146
BspDI ATCGAT 1 cut(s) 495
BspEI TCCGGA 2 cut(s) 30, 415
BspHI TCATGA 3 cut(s) 24, 55, 462
BspLI GGNNCC 2 cut(s) 127, 203
BspPI GGATC 2 cut(s) 22, 613
BspT107I GGYRCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 330
BssMI GATC 4 cut(s) 27, 52, 516, 618
BssNAI GTATAC 1 cut(s) 592
BssNI GRCGYC 1 cut(s) 202
BssSI CACGAG 1 cut(s) 48
Bst1107I GTATAC 1 cut(s) 592
Bst2BI CACGAG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 365, 453
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 306, 578
BstDEI CTNAG 3 cut(s) 95, 133, 382
BstF5I GGATG 3 cut(s) 22, 353, 592
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 4 cut(s) 30, 55, 519, 621
BstMBI GATC 4 cut(s) 27, 52, 516, 618
BstMWI GCNNNNNNNGC 2 cut(s) 244, 310
BstV1I GCAGC 1 cut(s) 398
BstZ17I GTATAC 1 cut(s) 592
Bsu15I ATCGAT 1 cut(s) 495
BsuI GTATCC 1 cut(s) 371
BsuTUI ATCGAT 1 cut(s) 495
BtsCI GGATG 3 cut(s) 22, 353, 592
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 2 cut(s) 306, 578
CciI TCATGA 3 cut(s) 24, 55, 462
CfoI GCGC 1 cut(s) 204
ClaI ATCGAT 1 cut(s) 495
Csp6I GTAC 2 cut(s) 91, 454
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 3 cut(s) 25, 56, 463
CviJI RGCY 9 cut(s) 47, 71, 161, 247, 389, 424, 541, 576, 580
CviKI_1 RGCY 9 cut(s) 47, 71, 161, 247, 389, 424, 541, 576, 580
CviQI GTAC 2 cut(s) 91, 454
DdeI CTNAG 3 cut(s) 95, 133, 382
DinI GGCGCC 1 cut(s) 203
DpnI GATC 4 cut(s) 29, 54, 518, 620
DpnII GATC 4 cut(s) 27, 52, 516, 618
DraI TTTAAA 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 49
EgeI GGCGCC 1 cut(s) 203
EheI GGCGCC 1 cut(s) 203
FaeI CATG 3 cut(s) 28, 59, 466
FatI CATG 3 cut(s) 24, 55, 462
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 2 cut(s) 273, 591
Fnu4HI GCNGC 2 cut(s) 387, 598
FokI GGATG 3 cut(s) 29, 360, 599
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 387, 598
FspBI CTAG 2 cut(s) 158, 248
GlaI GCGC 1 cut(s) 203
GluI GCNGC 2 cut(s) 387, 598
HaeII RGCGCY 1 cut(s) 205
HapII CCGG 3 cut(s) 31, 416, 584
HhaI GCGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 3 cut(s) 28, 59, 466
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HinfI GANTC 2 cut(s) 137, 145
HpaII CCGG 3 cut(s) 31, 416, 584
HphI GGTGA 2 cut(s) 441, 572
Hpy166II GTNNAC 4 cut(s) 190, 274, 484, 592
Hpy188I TCNGA 3 cut(s) 136, 142, 618
Hpy188III TCNNGA 7 cut(s) 25, 31, 50, 56, 281, 416, 463
Hpy8I GTNNAC 4 cut(s) 190, 274, 484, 592
HpyAV CCTTC 2 cut(s) 61, 338
HpyCH4III ACNGT 2 cut(s) 365, 453
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 181, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 310
HpyF3I CTNAG 3 cut(s) 95, 133, 382
HpySE526I ACGT 1 cut(s) 262
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 3 cut(s) 28, 59, 466
HspAI GCGC 1 cut(s) 202
KasI GGCGCC 1 cut(s) 201
Kpn2I TCCGGA 2 cut(s) 30, 415
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 4 cut(s) 27, 52, 516, 618
LpnPI CCDG 9 cut(s) 44, 107, 299, 310, 318, 389, 429, 590, 597
Lsp1109I GCAGC 1 cut(s) 398
MaeI CTAG 2 cut(s) 158, 248
MaeII ACGT 1 cut(s) 262
MalI GATC 4 cut(s) 29, 54, 518, 620
MboI GATC 4 cut(s) 27, 52, 516, 618
MboII GAAGA 4 cut(s) 32, 73, 298, 487
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 1 cut(s) 602
Mly113I GGCGCC 1 cut(s) 202
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 80, 120
MnlI CCTC 6 cut(s) 89, 95, 96, 222, 244, 414
MroI TCCGGA 2 cut(s) 30, 415
MseI TTAA 2 cut(s) 6, 258
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 3 cut(s) 31, 416, 584
MssI GTTTAAAC 1 cut(s) 259
Mva1269I GAATGC 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 244, 310
NarI GGCGCC 1 cut(s) 202
NdeII GATC 4 cut(s) 27, 52, 516, 618
NlaIII CATG 3 cut(s) 28, 59, 466
NlaIV GGNNCC 2 cut(s) 127, 203
PagI TCATGA 3 cut(s) 24, 55, 462
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 388, 599
PleI GAGTC 1 cut(s) 145
PluTI GGCGCC 1 cut(s) 205
PmeI GTTTAAAC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 145
Psp1406I AACGTT 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 127, 203
RsaI GTAC 2 cut(s) 92, 455
RsaNI GTAC 2 cut(s) 91, 454
SaqAI TTAA 2 cut(s) 6, 258
SatI GCNGC 2 cut(s) 387, 598
Sau3AI GATC 4 cut(s) 27, 52, 516, 618
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 49
SetI ASST 9 cut(s) 81, 96, 163, 249, 265, 391, 459, 543, 582
SfoI GGCGCC 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 86, 281
SmoI CTYRAG 2 cut(s) 86, 281
Sse9I AATT 1 cut(s) 602
SsiI CCGC 2 cut(s) 308, 597
SspDI GGCGCC 1 cut(s) 201
SspMI CTAG 2 cut(s) 158, 248
TaaI ACNGT 2 cut(s) 365, 453
TaiI ACGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 495
TasI AATT 1 cut(s) 602
TauI GCSGC 1 cut(s) 600
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 6, 258
Tru9I TTAA 2 cut(s) 6, 258
TscAI CASTG 1 cut(s) 370
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 13, 451
TspRI CASTG 1 cut(s) 370
XmiI GTMKAC 2 cut(s) 273, 591
XspI CTAG 2 cut(s) 158, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.