Rorug04G0229400

Random slug protein 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
39337984 .. 39339879
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0229400.1

Sequence Viewer

Length: 1206 bp
ATGATGTCAAACGCTTCTTCCTTTCTAGGCATATCAACAAACACCATTCGTGCACCAATCCATTATCCTGTACTTCAAAAACTTCTCTCTATCTTCTCTAATGGCTTCCACTACCAAAGAAACCGCCTCAGATTTTCTTCCTCTTATCACAGTCTTCAAAGATCACAGAGTCATGGGCTCACCATATGTGACCCCATCTCTTCCAAACCCAGAAACCAATTTCTTCTCCAACCTCATCACCAATGCAGTCCCAAAGAGATAGACAGAGAGCTTCTCCCATTTCTCAGAATCTACAAAGACGGCTCTGTTGAACGACTCATGGGCTCCCCATATGTACCCCCAACACTTGCTGACCCAGATTCAGTAGTGTCATCAAAAGACGTCACAATTTCACAAAATCCTTTGATTTCTGCCAGACTCTTCCTCCCAAAACTCAATGAGCCTCACAAGAAAATACCCATCTTGGTTTACTACCATGGTGGAGCTTTCTGCGTCGAATCTGCCTTCTCTTTTGATCACCACAGGTTTCTCAACAGCTTGGTGTCCCAAGCCAAAGTTGTTGCTGTGTCAGTCGAGTACAGAATGGCTCCTGAGCACTCTCTCCCCATTGCATATGACGATAGCTGGGCAGCACTGAATTGGGTTGCCTTGCATTTTGCTGATAATGGCATCAATGAAGAGCCCTGGTTGATCAGTCACGGCGACCCGAATCGGTTATTTCTGGGTGGTGATAGTGCAGGAGCTAACATTGCTCATAATGTGGCAATGAGAGTTGGGAAAGAAGGATTGCCTAATGGTATAAATTTTTTGGGAGTCTTTCTTACACACCCATTTTTTTGGGGCTCCAAGCCAATTGAGGGAGACCCTTGTGAAGAGCCTGAGAAGGATTTGGCTTGTTTGGTTTGGGACATGGCGTACCCTTCAGCCCCTGGGGGGATTGATAATCCAATGATCAATCCTGTTGCTCCAGAAGCACCAAGCTTGGCTGGACTTGGGTGTTCAAAGGTGCTTATTAGTGTTTCTGAGAACGATGAGCTGAGGCATAGAGGTGTGGGTTACTATGAGGCAGTGAAAAGAAGTGGGTTTGAAGGTGAAGCAGAGTTGGTTGAAGTGGAAGGAGAGGATCATGCATTTCATATTTTGAAATTTGAGACTCGGAAAGCTAAGGAATTGACAAAAAAGTTGGCTGATTTCCTCCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

401

Amino Acids

44.6

Weight (kDa)

6.22

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 141 - 257 1.6e-08 Carboxylesterase family
BD-FAE PF20434 147 - 262 1e-08 BD-FAE
Abhydrolase_3 PF07859 155 - 379 3.3e-46 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011976)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 384
AciI CCGC 1 cut(s) 124
AclWI GGATC 1 cut(s) 1131
AcsI RAATTY 2 cut(s) 802, 1145
AcuI CTGAAG 1 cut(s) 906
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 4 cut(s) 72, 336, 578, 917
AfiI CCNNNNNNNGG 2 cut(s) 857, 933
AgsI TTSAA 7 cut(s) 77, 158, 311, 1002, 1088, 1109, 1144
AjnI CCWGG 2 cut(s) 683, 928
AluBI AGCT 8 cut(s) 271, 485, 537, 624, 743, 981, 1036, 1163
AluI AGCT 8 cut(s) 271, 485, 537, 624, 743, 981, 1036, 1163
Alw21I GWGCWC 2 cut(s) 55, 597
Alw26I GTCTC 2 cut(s) 855, 1145
Alw44I GTGCAC 1 cut(s) 51
AlwI GGATC 1 cut(s) 1131
AlwNI CAGNNNCTG 1 cut(s) 929
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 629
ApoI RAATTY 2 cut(s) 802, 1145
AsuHPI GGTGA 5 cut(s) 172, 230, 509, 740, 1103
BaeGI GKGCMC 1 cut(s) 55
BanII GRGCYC 4 cut(s) 180, 326, 684, 845
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 55, 597
BbvCI CCTCAGC 1 cut(s) 1037
BbvI GCAGC 1 cut(s) 641
BccI CCATC 2 cut(s) 203, 467
BceAI ACGGC 2 cut(s) 316, 715
BciT130I CCWGG 2 cut(s) 685, 930
BclI TGATCA 3 cut(s) 514, 690, 951
BcoDI GTCTC 2 cut(s) 855, 1145
BfaI CTAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 630
BlsI GCNGC 1 cut(s) 631
Bme1390I CCNGG 2 cut(s) 685, 930
BmiI GGNNCC 3 cut(s) 325, 588, 844
BmrFI CCNGG 2 cut(s) 685, 930
BmsI GCATC 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 258, 290
BpmI CTGGAG 1 cut(s) 951
Bpu10I CCTNAGC 3 cut(s) 591, 1037, 1164
BpuEI CTTGAG 1 cut(s) 1184
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 855
BsaJI CCNNGG 4 cut(s) 475, 683, 928, 929
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 2 cut(s) 857, 933
Bse3DI GCAATG 3 cut(s) 606, 747, 771
BseBI CCWGG 2 cut(s) 685, 930
BseDI CCNNGG 4 cut(s) 475, 683, 928, 929
BseLI CCNNNNNNNGG 2 cut(s) 857, 933
BseMI GCAATG 3 cut(s) 606, 747, 771
BseMII CTCAG 6 cut(s) 142, 298, 582, 870, 1014, 1028
BseRI GAGGAG 1 cut(s) 1187
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 1 cut(s) 641
BseYI CCCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 756
BsiHKAI GWGCWC 2 cut(s) 55, 597
BslFI GGGAC 3 cut(s) 234, 529, 920
BslI CCNNNNNNNGG 2 cut(s) 857, 933
BsmAI GTCTC 2 cut(s) 855, 1145
BsmFI GGGAC 3 cut(s) 234, 529, 920
Bso31I GGTCTC 1 cut(s) 855
Bsp1286I GDGCHC 6 cut(s) 55, 180, 326, 597, 684, 845
Bsp143I GATC 5 cut(s) 161, 514, 690, 951, 1123
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 1 cut(s) 124
BspCNI CTCAG 6 cut(s) 141, 297, 583, 871, 1015, 1029
BspLI GGNNCC 3 cut(s) 325, 588, 844
BspPI GGATC 1 cut(s) 1131
BspQI GCTCTTC 2 cut(s) 672, 867
BspTNI GGTCTC 1 cut(s) 855
BsrDI GCAATG 3 cut(s) 606, 747, 771
BssECI CCNNGG 4 cut(s) 475, 683, 928, 929
BssMI GATC 5 cut(s) 161, 514, 690, 951, 1123
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 475
Bst2UI CCWGG 2 cut(s) 685, 930
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 4 cut(s) 205, 425, 672, 867
BstACI GRCGYC 1 cut(s) 381
BstDEI CTNAG 7 cut(s) 128, 284, 591, 879, 1023, 1037, 1164
BstDSI CCRYGG 1 cut(s) 475
BstKTI GATC 5 cut(s) 164, 517, 693, 954, 1126
BstMAI GTCTC 2 cut(s) 855, 1145
BstMBI GATC 5 cut(s) 161, 514, 690, 951, 1123
BstMWI GCNNNNNNNGC 2 cut(s) 749, 971
BstNI CCWGG 2 cut(s) 685, 930
BstSCI CCNGG 2 cut(s) 683, 928
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 641
BstV2I GAAGAC 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 837
BtgI CCRYGG 1 cut(s) 475
BtsI GCAGTG 1 cut(s) 1074
BtsIMutI CAGTG 2 cut(s) 632, 1074
CaiI CAGNNNCTG 1 cut(s) 929
CseI GACGC 1 cut(s) 481
Csp6I GTAC 4 cut(s) 71, 335, 577, 916
CviAII CATG 5 cut(s) 173, 319, 476, 910, 1127
CviQI GTAC 4 cut(s) 71, 335, 577, 916
DdeI CTNAG 7 cut(s) 128, 284, 591, 879, 1023, 1037, 1164
DpnI GATC 5 cut(s) 163, 516, 692, 953, 1125
DpnII GATC 5 cut(s) 161, 514, 690, 951, 1123
Eam1104I CTCTTC 4 cut(s) 205, 425, 672, 867
EarI CTCTTC 4 cut(s) 205, 425, 672, 867
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 4 cut(s) 180, 326, 684, 845
Eco31I GGTCTC 1 cut(s) 855
Eco57I CTGAAG 1 cut(s) 906
EcoRII CCWGG 2 cut(s) 683, 928
EcoT14I CCWWGG 1 cut(s) 475
EcoT22I ATGCAT 1 cut(s) 1132
EcoT38I GRGCYC 4 cut(s) 180, 326, 684, 845
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 5 cut(s) 176, 322, 479, 913, 1130
FaqI GGGAC 3 cut(s) 234, 529, 920
FatI CATG 5 cut(s) 172, 318, 475, 909, 1126
FauNDI CATATG 3 cut(s) 185, 331, 613
FbaI TGATCA 3 cut(s) 514, 690, 951
Fnu4HI GCNGC 1 cut(s) 630
FriOI GRGCYC 4 cut(s) 180, 326, 684, 845
Fsp4HI GCNGC 1 cut(s) 630
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 630
GsaI CCCAGC 1 cut(s) 628
GsuI CTGGAG 1 cut(s) 951
HgaI GACGC 1 cut(s) 481
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 5 cut(s) 176, 322, 479, 913, 1130
HindIII AAGCTT 1 cut(s) 979
HinfI GANTC 9 cut(s) 169, 288, 315, 359, 417, 497, 709, 813, 1153
HphI GGTGA 5 cut(s) 172, 230, 509, 740, 1103
Hpy166II GTNNAC 2 cut(s) 53, 469
Hpy188I TCNGA 4 cut(s) 131, 287, 1024, 1158
Hpy188III TCNNGA 2 cut(s) 590, 968
Hpy8I GTNNAC 2 cut(s) 53, 469
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 6 cut(s) 514, 776, 877, 930, 1082, 1109
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 6 cut(s) 53, 246, 611, 652, 737, 1130
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 971
HpyF3I CTNAG 7 cut(s) 128, 284, 591, 879, 1023, 1037, 1164
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 5 cut(s) 176, 322, 479, 913, 1130
Ksp22I TGATCA 3 cut(s) 514, 690, 951
Kzo9I GATC 5 cut(s) 161, 514, 690, 951, 1123
LguI GCTCTTC 2 cut(s) 672, 867
LmnI GCTCC 6 cut(s) 329, 482, 592, 740, 848, 970
Lsp1109I GCAGC 1 cut(s) 641
LweI GCATC 1 cut(s) 678
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 4 cut(s) 188, 382, 695, 1055
MalI GATC 5 cut(s) 163, 516, 692, 953, 1125
MboI GATC 5 cut(s) 161, 514, 690, 951, 1123
MboII GAAGA 9 cut(s) 9, 85, 129, 146, 192, 215, 412, 689, 884
MfeI CAATTG 1 cut(s) 852
MhlI GDGCHC 6 cut(s) 55, 180, 326, 597, 684, 845
MluCI AATT 7 cut(s) 218, 387, 637, 802, 852, 1145, 1169
MlyI GAGTC 5 cut(s) 178, 309, 411, 822, 1147
MmeI TCCRAC 1 cut(s) 253
Mph1103I ATGCAT 1 cut(s) 1132
MslI CAYNNNNRTG 1 cut(s) 1047
MspR9I CCNGG 2 cut(s) 685, 930
MunI CAATTG 1 cut(s) 852
MvaI CCWGG 2 cut(s) 685, 930
MwoI GCNNNNNNNGC 2 cut(s) 749, 971
NcoI CCATGG 1 cut(s) 475
NdeI CATATG 3 cut(s) 185, 331, 613
NdeII GATC 5 cut(s) 161, 514, 690, 951, 1123
NlaIII CATG 5 cut(s) 176, 322, 479, 913, 1130
NlaIV GGNNCC 3 cut(s) 325, 588, 844
NmuCI GTSAC 3 cut(s) 188, 382, 695
NsiI ATGCAT 1 cut(s) 1132
PasI CCCWGGG 1 cut(s) 929
PciSI GCTCTTC 2 cut(s) 672, 867
PfeI GAWTC 4 cut(s) 288, 359, 497, 709
PkrI GCNGC 1 cut(s) 631
PleI GAGTC 5 cut(s) 177, 309, 411, 821, 1147
PpsI GAGTC 5 cut(s) 177, 309, 411, 821, 1147
Psp6I CCWGG 2 cut(s) 683, 928
PspFI CCCAGC 1 cut(s) 624
PspGI CCWGG 2 cut(s) 683, 928
PspN4I GGNNCC 3 cut(s) 325, 588, 844
PstNI CAGNNNCTG 1 cut(s) 929
RsaI GTAC 4 cut(s) 72, 336, 578, 917
RsaNI GTAC 4 cut(s) 71, 335, 577, 916
RseI CAYNNNNRTG 1 cut(s) 1047
SapI GCTCTTC 2 cut(s) 672, 867
SatI GCNGC 1 cut(s) 630
Sau3AI GATC 5 cut(s) 161, 514, 690, 951, 1123
SchI GAGTC 5 cut(s) 178, 309, 411, 822, 1147
ScrFI CCNGG 2 cut(s) 685, 930
SduI GDGCHC 6 cut(s) 55, 180, 326, 597, 684, 845
SfaNI GCATC 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 1047
SmlI CTYRAG 1 cut(s) 1199
SmoI CTYRAG 1 cut(s) 1199
Sse9I AATT 7 cut(s) 218, 387, 637, 802, 852, 1145, 1169
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 683, 928
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 495, 573
TasI AATT 7 cut(s) 218, 387, 637, 802, 852, 1145, 1169
TatI WGTACW 2 cut(s) 70, 576
TfiI GAWTC 4 cut(s) 288, 359, 497, 709
TscAI CASTG 2 cut(s) 639, 1074
TseFI GTSAC 3 cut(s) 188, 382, 695
TseI GCWGC 1 cut(s) 629
Tsp45I GTSAC 3 cut(s) 188, 382, 695
TspDTI ATGAA 2 cut(s) 690, 1124
TspRI CASTG 2 cut(s) 639, 1074
VneI GTGCAC 1 cut(s) 51
XapI RAATTY 2 cut(s) 802, 1145
XspI CTAG 1 cut(s) 26
ZraI GACGTC 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.