Zinc finger BED domain-containing protein RICESLEEPER
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0360411 RchiOBHm_Chr3g0479201 RchiOBHm_Chr5g0016291 RchiOBHm_Chr5g0071091 |
| rosa_laevigata | RLG00000004355 RLG00000012312 RLG00000019508 RLG00000019971 RLG00000036427 |
| rosa_multiflora | Rmu_sc0011390.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00009370 Rroxscaffold_2G00107450 |
| rosa_rugosa | Rorug01G0201800 |
| rosa_samantha | Rh1BG230500 Rh1CG077400 Rh2DG192900 Rh4BG427800 Rh7AG180300 Rh7CG180400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 77 |
| AccB1I | GGYRCC | 1 cut(s) | 77 |
| AciI | CCGC | 1 cut(s) | 13 |
| AcsI | RAATTY | 3 cut(s) | 266, 718, 816 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AfaI | GTAC | 1 cut(s) | 79 |
| AgsI | TTSAA | 6 cut(s) | 503, 542, 658, 716, 724, 854 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 172, 204 |
| AluBI | AGCT | 6 cut(s) | 38, 104, 131, 173, 523, 534 |
| AluI | AGCT | 6 cut(s) | 38, 104, 131, 173, 523, 534 |
| Alw21I | GWGCWC | 3 cut(s) | 40, 133, 204 |
| Alw26I | GTCTC | 1 cut(s) | 306 |
| Ama87I | CYCGRG | 1 cut(s) | 168 |
| ApeKI | GCWGC | 2 cut(s) | 896, 899 |
| ApoI | RAATTY | 3 cut(s) | 266, 718, 816 |
| Asp718I | GGTACC | 1 cut(s) | 77 |
| AspS9I | GGNCC | 3 cut(s) | 302, 592, 930 |
| AsuC2I | CCSGG | 1 cut(s) | 390 |
| AsuHPI | GGTGA | 1 cut(s) | 443 |
| AvaI | CYCGRG | 1 cut(s) | 168 |
| AvaII | GGWCC | 3 cut(s) | 302, 592, 930 |
| AxyI | CCTNAGG | 1 cut(s) | 297 |
| BanI | GGYRCC | 1 cut(s) | 77 |
| BanII | GRGCYC | 2 cut(s) | 40, 133 |
| Bbv12I | GWGCWC | 3 cut(s) | 40, 133, 204 |
| BbvI | GCAGC | 2 cut(s) | 908, 911 |
| BccI | CCATC | 2 cut(s) | 142, 887 |
| BcnI | CCSGG | 1 cut(s) | 390 |
| BcoDI | GTCTC | 1 cut(s) | 306 |
| BfaI | CTAG | 3 cut(s) | 54, 59, 308 |
| BfmI | CTRYAG | 1 cut(s) | 676 |
| BisI | GCNGC | 2 cut(s) | 897, 900 |
| BlsI | GCNGC | 2 cut(s) | 898, 901 |
| Bme1390I | CCNGG | 1 cut(s) | 390 |
| Bme18I | GGWCC | 3 cut(s) | 302, 592, 930 |
| BmeT110I | CYCGRG | 1 cut(s) | 168 |
| BmgT120I | GGNCC | 3 cut(s) | 302, 592, 930 |
| BmiI | GGNNCC | 3 cut(s) | 79, 303, 594 |
| BmrFI | CCNGG | 1 cut(s) | 390 |
| BpuEI | CTTGAG | 3 cut(s) | 24, 105, 330 |
| BpuMI | CCSGG | 1 cut(s) | 390 |
| Bsa29I | ATCGAT | 1 cut(s) | 753 |
| BsaBI | GATNNNNATC | 1 cut(s) | 411 |
| Bse1I | ACTGG | 1 cut(s) | 79 |
| Bse21I | CCTNAGG | 1 cut(s) | 297 |
| Bse8I | GATNNNNATC | 1 cut(s) | 411 |
| BseCI | ATCGAT | 1 cut(s) | 753 |
| BseGI | GGATG | 1 cut(s) | 357 |
| BseJI | GATNNNNATC | 1 cut(s) | 411 |
| BseNI | ACTGG | 1 cut(s) | 79 |
| BseXI | GCAGC | 2 cut(s) | 908, 911 |
| BshNI | GGYRCC | 1 cut(s) | 77 |
| BshVI | ATCGAT | 1 cut(s) | 753 |
| BsiHKAI | GWGCWC | 3 cut(s) | 40, 133, 204 |
| BsiHKCI | CYCGRG | 1 cut(s) | 168 |
| BsiSI | CCGG | 1 cut(s) | 390 |
| BslFI | GGGAC | 2 cut(s) | 355, 578 |
| BsmAI | GTCTC | 1 cut(s) | 306 |
| BsmFI | GGGAC | 2 cut(s) | 355, 578 |
| BsoBI | CYCGRG | 1 cut(s) | 168 |
| Bsp1286I | GDGCHC | 3 cut(s) | 40, 133, 204 |
| Bsp143I | GATC | 1 cut(s) | 949 |
| BspACI | CCGC | 1 cut(s) | 13 |
| BspDI | ATCGAT | 1 cut(s) | 753 |
| BspLI | GGNNCC | 3 cut(s) | 79, 303, 594 |
| BspT107I | GGYRCC | 1 cut(s) | 77 |
| BsrI | ACTGG | 1 cut(s) | 79 |
| BssMI | GATC | 1 cut(s) | 949 |
| Bst4CI | ACNGT | 1 cut(s) | 886 |
| Bst6I | CTCTTC | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 1 cut(s) | 426 |
| BstDEI | CTNAG | 3 cut(s) | 279, 297, 957 |
| BstF5I | GGATG | 1 cut(s) | 357 |
| BstKTI | GATC | 1 cut(s) | 952 |
| BstMAI | GTCTC | 1 cut(s) | 306 |
| BstMBI | GATC | 1 cut(s) | 949 |
| BstNSI | RCATGY | 1 cut(s) | 498 |
| BstSCI | CCNGG | 1 cut(s) | 388 |
| BstSFI | CTRYAG | 1 cut(s) | 676 |
| BstV1I | GCAGC | 2 cut(s) | 908, 911 |
| Bsu15I | ATCGAT | 1 cut(s) | 753 |
| Bsu36I | CCTNAGG | 1 cut(s) | 297 |
| BsuTUI | ATCGAT | 1 cut(s) | 753 |
| BtsCI | GGATG | 1 cut(s) | 357 |
| BtsI | GCAGTG | 1 cut(s) | 582 |
| BtsIMutI | CAGTG | 2 cut(s) | 582, 693 |
| Cac8I | GCNNGC | 1 cut(s) | 426 |
| Cfr13I | GGNCC | 3 cut(s) | 302, 592, 930 |
| ClaI | ATCGAT | 1 cut(s) | 753 |
| Csp6I | GTAC | 1 cut(s) | 78 |
| CviAII | CATG | 4 cut(s) | 375, 495, 569, 730 |
| CviJI | RGCY | 8 cut(s) | 38, 104, 131, 173, 278, 523, 534, 902 |
| CviKI_1 | RGCY | 8 cut(s) | 38, 104, 131, 173, 278, 523, 534, 902 |
| CviQI | GTAC | 1 cut(s) | 78 |
| DdeI | CTNAG | 3 cut(s) | 279, 297, 957 |
| DpnI | GATC | 1 cut(s) | 951 |
| DpnII | GATC | 1 cut(s) | 949 |
| DraI | TTTAAA | 1 cut(s) | 19 |
| Eam1104I | CTCTTC | 1 cut(s) | 26 |
| EarI | CTCTTC | 1 cut(s) | 26 |
| Ecl136II | GAGCTC | 2 cut(s) | 38, 131 |
| Eco24I | GRGCYC | 2 cut(s) | 40, 133 |
| Eco47I | GGWCC | 3 cut(s) | 302, 592, 930 |
| Eco53kI | GAGCTC | 2 cut(s) | 38, 131 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| Eco81I | CCTNAGG | 1 cut(s) | 297 |
| Eco88I | CYCGRG | 1 cut(s) | 168 |
| EcoICRI | GAGCTC | 2 cut(s) | 38, 131 |
| EcoO109I | RGGNCCY | 2 cut(s) | 302, 592 |
| EcoT22I | ATGCAT | 1 cut(s) | 774 |
| EcoT38I | GRGCYC | 2 cut(s) | 40, 133 |
| FaeI | CATG | 4 cut(s) | 378, 498, 572, 733 |
| FaqI | GGGAC | 2 cut(s) | 355, 578 |
| FatI | CATG | 4 cut(s) | 374, 494, 568, 729 |
| Fnu4HI | GCNGC | 2 cut(s) | 897, 900 |
| FokI | GGATG | 1 cut(s) | 364 |
| FriOI | GRGCYC | 2 cut(s) | 40, 133 |
| Fsp4HI | GCNGC | 2 cut(s) | 897, 900 |
| FspBI | CTAG | 3 cut(s) | 54, 59, 308 |
| GluI | GCNGC | 2 cut(s) | 897, 900 |
| HapII | CCGG | 1 cut(s) | 390 |
| Hin1II | CATG | 4 cut(s) | 378, 498, 572, 733 |
| HinfI | GANTC | 4 cut(s) | 50, 326, 343, 839 |
| HpaII | CCGG | 1 cut(s) | 390 |
| HphI | GGTGA | 1 cut(s) | 443 |
| Hpy188I | TCNGA | 2 cut(s) | 148, 417 |
| Hpy188III | TCNNGA | 3 cut(s) | 41, 248, 476 |
| HpyAV | CCTTC | 2 cut(s) | 38, 387 |
| HpyCH4III | ACNGT | 1 cut(s) | 886 |
| HpyCH4V | TGCA | 4 cut(s) | 575, 772, 795, 896 |
| HpyF3I | CTNAG | 3 cut(s) | 279, 297, 957 |
| Hsp92II | CATG | 4 cut(s) | 378, 498, 572, 733 |
| KpnI | GGTACC | 1 cut(s) | 81 |
| Kzo9I | GATC | 1 cut(s) | 949 |
| LmnI | GCTCC | 3 cut(s) | 128, 136, 199 |
| LpnPI | CCDG | 6 cut(s) | 60, 108, 111, 403, 414, 489 |
| Lsp1109I | GCAGC | 2 cut(s) | 908, 911 |
| MaeI | CTAG | 3 cut(s) | 54, 59, 308 |
| MaeIII | GTNAC | 2 cut(s) | 115, 158 |
| MalI | GATC | 1 cut(s) | 951 |
| MboI | GATC | 1 cut(s) | 949 |
| MboII | GAAGA | 7 cut(s) | 43, 119, 122, 129, 263, 275, 661 |
| MhlI | GDGCHC | 3 cut(s) | 40, 133, 204 |
| MluCI | AATT | 5 cut(s) | 266, 448, 718, 787, 816 |
| MlyI | GAGTC | 2 cut(s) | 337, 848 |
| MnlI | CCTC | 7 cut(s) | 91, 97, 151, 177, 267, 315, 771 |
| Mph1103I | ATGCAT | 1 cut(s) | 774 |
| MseI | TTAA | 8 cut(s) | 18, 71, 207, 471, 588, 615, 875, 939 |
| MspI | CCGG | 1 cut(s) | 390 |
| MspR9I | CCNGG | 1 cut(s) | 390 |
| NciI | CCSGG | 1 cut(s) | 390 |
| NdeII | GATC | 1 cut(s) | 949 |
| NlaIII | CATG | 4 cut(s) | 378, 498, 572, 733 |
| NlaIV | GGNNCC | 3 cut(s) | 79, 303, 594 |
| NmuCI | GTSAC | 1 cut(s) | 115 |
| NsiI | ATGCAT | 1 cut(s) | 774 |
| NspI | RCATGY | 1 cut(s) | 498 |
| PaeR7I | CTCGAG | 1 cut(s) | 168 |
| PfeI | GAWTC | 2 cut(s) | 50, 326 |
| PfoI | TCCNGGA | 1 cut(s) | 388 |
| PkrI | GCNGC | 2 cut(s) | 898, 901 |
| PleI | GAGTC | 2 cut(s) | 337, 847 |
| PpsI | GAGTC | 2 cut(s) | 337, 847 |
| PpuMI | RGGWCCY | 2 cut(s) | 302, 592 |
| Psp124BI | GAGCTC | 2 cut(s) | 40, 133 |
| Psp5II | RGGWCCY | 2 cut(s) | 302, 592 |
| PspN4I | GGNNCC | 3 cut(s) | 79, 303, 594 |
| PspPI | GGNCC | 3 cut(s) | 302, 592, 930 |
| PspPPI | RGGWCCY | 2 cut(s) | 302, 592 |
| PspXI | VCTCGAGB | 1 cut(s) | 168 |
| RsaI | GTAC | 1 cut(s) | 79 |
| RsaNI | GTAC | 1 cut(s) | 78 |
| SacI | GAGCTC | 2 cut(s) | 40, 133 |
| SaqAI | TTAA | 8 cut(s) | 18, 71, 207, 471, 588, 615, 875, 939 |
| SatI | GCNGC | 2 cut(s) | 897, 900 |
| Sau3AI | GATC | 1 cut(s) | 949 |
| Sau96I | GGNCC | 3 cut(s) | 302, 592, 930 |
| SchI | GAGTC | 2 cut(s) | 337, 848 |
| ScrFI | CCNGG | 1 cut(s) | 390 |
| SduI | GDGCHC | 3 cut(s) | 40, 133, 204 |
| SfcI | CTRYAG | 1 cut(s) | 676 |
| Sfr274I | CTCGAG | 1 cut(s) | 168 |
| SinI | GGWCC | 3 cut(s) | 302, 592, 930 |
| SlaI | CTCGAG | 1 cut(s) | 168 |
| SmlI | CTYRAG | 4 cut(s) | 39, 120, 168, 345 |
| SmoI | CTYRAG | 4 cut(s) | 39, 120, 168, 345 |
| Sse9I | AATT | 5 cut(s) | 266, 448, 718, 787, 816 |
| SsiI | CCGC | 1 cut(s) | 13 |
| SspMI | CTAG | 3 cut(s) | 54, 59, 308 |
| SstI | GAGCTC | 2 cut(s) | 40, 133 |
| StyD4I | CCNGG | 1 cut(s) | 388 |
| TaaI | ACNGT | 1 cut(s) | 886 |
| TaqI | TCGA | 2 cut(s) | 169, 753 |
| TasI | AATT | 5 cut(s) | 266, 448, 718, 787, 816 |
| TfiI | GAWTC | 2 cut(s) | 50, 326 |
| Tru1I | TTAA | 8 cut(s) | 18, 71, 207, 471, 588, 615, 875, 939 |
| Tru9I | TTAA | 8 cut(s) | 18, 71, 207, 471, 588, 615, 875, 939 |
| TscAI | CASTG | 2 cut(s) | 582, 700 |
| TseFI | GTSAC | 1 cut(s) | 115 |
| TseI | GCWGC | 2 cut(s) | 896, 899 |
| Tsp45I | GTSAC | 1 cut(s) | 115 |
| TspDTI | ATGAA | 3 cut(s) | 470, 495, 503 |
| TspRI | CASTG | 2 cut(s) | 582, 700 |
| VpaK11BI | GGWCC | 3 cut(s) | 302, 592, 930 |
| XapI | RAATTY | 3 cut(s) | 266, 718, 816 |
| XceI | RCATGY | 1 cut(s) | 498 |
| XhoI | CTCGAG | 1 cut(s) | 168 |
| XspI | CTAG | 3 cut(s) | 54, 59, 308 |
| Zsp2I | ATGCAT | 1 cut(s) | 774 |