Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012679

Physical Location & Seq

Genomic Coordinates Reverse (-)

28106291 .. 28110066

Gene Structure 3776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGGGCGATGATATTGGCGCGAGGAAAGCTGATGACACTATCGGACGAATGTTGTCTTCCGGCTCCGGCTCCGGCTCGGATTCCAAGCGCGTCTCAGGCTCGGATTCCAAGATCTCCGGCTCAGAAGCCGAGGTCCTTCCTCATGCGGTCTCCGATTCCGGTGGAGTCTCAGGCGCCGATTCCGAGATCTCCGGTTCAGAAGCCGAGCTTCTTCCTCATACGGTCTCCGATTCAGATCTCGACTCAGGCTCGGATTCCAAGATCTCCGGCACAGATCCCGACGTTGTACCTCTAGCTCCGCGCGGTCACGGACGTTCACTCGGTGGTAGCCGCCTTCCAAACTTGGTCAGATGTTTATTAGGCCTCGTGCAGAAGTTTTGTGAGTGGAGGTCGAGGCCATGTGGCAGGAGGTATAGGCCACAGTGCTGGAGGTCGAGGCCATTTTGCAGGAGGTATAGGCCAGGGTGCCGGGGGACGAGGCCACATTGTCATAGGGCGAGGCCATGGTTCCGGTGGGAGGTATTCAATCAACTACTTTTTAAGATTCGTTGTGCGCCTTGTGAGAGTATATGCATACTAGTATCTTTTAGCAGTTGTTTATATTCAATGCAAACTCAAATTAAATTATTTGTGTGTTCTTATCAAAGACTTTATATAGACTGGTGTGTTTCAGTAGAACCTAAAAAGATTTATAAAGGCAATCTCCCTCCAACTTTCTCTTCAATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

244

Amino Acids

26.94

Weight (kDa)

9.0

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012679)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360411 RchiOBHm_Chr3g0479201 RchiOBHm_Chr5g0016291 RchiOBHm_Chr5g0071091
rosa_laevigata	RLG00000004355 RLG00000012312 RLG00000019508 RLG00000019971 RLG00000036427
rosa_multiflora	Rmu_sc0011390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009370 Rroxscaffold_2G00107450
rosa_rugosa	Rorug01G0201800
rosa_samantha	Rh1BG230500 Rh1CG077400 Rh2DG192900 Rh4BG427800 Rh7AG180300 Rh7CG180400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AccB1I	GGYRCC	2 cut(s)	176, 468
AccII	CGCG	4 cut(s)	23, 93, 304, 306
AciI	CCGC	4 cut(s)	149, 302, 306, 334
AclWI	GGATC	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	529, 609, 726
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	1 cut(s)	706
AluBI	AGCT	3 cut(s)	32, 211, 299
AluI	AGCT	3 cut(s)	32, 211, 299
Alw26I	GTCTC	4 cut(s)	100, 157, 175, 232
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	7 cut(s)	364, 398, 419, 440, 461, 482, 503
AspLEI	GCGC	5 cut(s)	23, 93, 179, 306, 559
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	2 cut(s)	176, 468
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	4 cut(s)	100, 157, 175, 232
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	2 cut(s)	296, 581
BfoI	RGCGCY	1 cut(s)	180
BglII	AGATCT	4 cut(s)	114, 189, 238, 264
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	465, 473
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	5 cut(s)	67, 73, 178, 470, 512
BmrFI	CCNGG	2 cut(s)	465, 473
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	451
BpuMI	CCSGG	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	157, 232
BsaJI	CCNNGG	4 cut(s)	132, 464, 472, 506
BsaWI	WCCGGW	3 cut(s)	161, 194, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	668
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	4 cut(s)	132, 464, 472, 506
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMII	CTCAG	4 cut(s)	111, 138, 186, 261
BseNI	ACTGG	1 cut(s)	668
BsgI	GTGCAG	1 cut(s)	392
Bsh1236I	CGCG	4 cut(s)	23, 93, 304, 306
BshFI	GGCC	7 cut(s)	366, 400, 421, 442, 463, 484, 505
BshNI	GGYRCC	2 cut(s)	176, 468
BsiSI	CCGG	9 cut(s)	63, 69, 75, 120, 162, 195, 270, 472, 514
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	4 cut(s)	100, 157, 175, 232
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	7 cut(s)	366, 400, 421, 442, 463, 484, 505
Bso31I	GGTCTC	2 cut(s)	157, 232
Bsp143I	GATC	5 cut(s)	114, 189, 238, 264, 277
Bsp19I	CCATGG	1 cut(s)	506
BspACI	CCGC	4 cut(s)	149, 302, 306, 334
BspANI	GGCC	7 cut(s)	366, 400, 421, 442, 463, 484, 505
BspCNI	CTCAG	4 cut(s)	110, 137, 185, 260
BspFNI	CGCG	4 cut(s)	23, 93, 304, 306
BspLI	GGNNCC	5 cut(s)	67, 73, 178, 470, 512
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	2 cut(s)	176, 468
BspTNI	GGTCTC	2 cut(s)	157, 232
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	4 cut(s)	132, 464, 472, 506
BssMI	GATC	5 cut(s)	114, 189, 238, 264, 277
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	226, 426
Bst6I	CTCTTC	1 cut(s)	727
BstACI	GRCGYC	1 cut(s)	177
BstDEI	CTNAG	4 cut(s)	97, 124, 172, 247
BstDSI	CCRYGG	1 cut(s)	506
BstFNI	CGCG	4 cut(s)	23, 93, 304, 306
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	5 cut(s)	23, 93, 179, 306, 559
BstKTI	GATC	5 cut(s)	117, 192, 241, 267, 280
BstMAI	GTCTC	4 cut(s)	100, 157, 175, 232
BstMBI	GATC	5 cut(s)	114, 189, 238, 264, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 99
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	2 cut(s)	463, 471
BstUI	CGCG	4 cut(s)	23, 93, 304, 306
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	5 cut(s)	114, 189, 238, 264, 277
BstXI	CCANNNNNNTGG	1 cut(s)	429
BstYI	RGATCY	5 cut(s)	114, 189, 238, 264, 277
BsuRI	GGCC	7 cut(s)	366, 400, 421, 442, 463, 484, 505
BtgI	CCRYGG	1 cut(s)	506
BtgZI	GCGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	431
CfoI	GCGC	5 cut(s)	23, 93, 179, 306, 559
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	3 cut(s)	146, 402, 507
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	4 cut(s)	97, 124, 172, 247
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	5 cut(s)	116, 191, 240, 266, 279
DpnII	GATC	5 cut(s)	114, 189, 238, 264, 277
DraIII	CACNNNGTG	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	727
EarI	CTCTTC	1 cut(s)	727
Eco130I	CCWWGG	1 cut(s)	506
Eco147I	AGGCCT	1 cut(s)	366
Eco31I	GGTCTC	2 cut(s)	157, 232
Eco47I	GGWCC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	506
EcoT22I	ATGCAT	1 cut(s)	578
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	506
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	3 cut(s)	149, 405, 510
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	3 cut(s)	145, 401, 506
Fnu4HI	GCNGC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	2 cut(s)	296, 581
GlaI	GCGC	5 cut(s)	22, 92, 178, 305, 558
GluI	GCNGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	451
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	7 cut(s)	366, 400, 421, 442, 463, 484, 505
HapII	CCGG	9 cut(s)	63, 69, 75, 120, 162, 195, 270, 472, 514
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	5 cut(s)	23, 93, 179, 306, 559
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	149, 405, 510
Hin6I	GCGC	5 cut(s)	21, 91, 177, 304, 557
HinP1I	GCGC	5 cut(s)	21, 91, 177, 304, 557
HinfI	GANTC	9 cut(s)	83, 107, 158, 168, 182, 233, 245, 257, 547
HpaII	CCGG	9 cut(s)	63, 69, 75, 120, 162, 195, 270, 472, 514
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188III	TCNNGA	2 cut(s)	242, 281
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	149, 347
HpyCH4III	ACNGT	2 cut(s)	226, 426
HpyCH4IV	ACGT	2 cut(s)	285, 316
HpyCH4V	TGCA	4 cut(s)	373, 450, 576, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 99
HpyF3I	CTNAG	4 cut(s)	97, 124, 172, 247
HpySE526I	ACGT	2 cut(s)	285, 316
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	149, 405, 510
HspAI	GCGC	5 cut(s)	21, 91, 177, 304, 557
KasI	GGCGCC	1 cut(s)	176
Kzo9I	GATC	5 cut(s)	114, 189, 238, 264, 277
LmnI	GCTCC	3 cut(s)	71, 77, 304
MaeI	CTAG	2 cut(s)	296, 581
MaeII	ACGT	2 cut(s)	285, 316
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	5 cut(s)	116, 191, 240, 266, 279
MboI	GATC	5 cut(s)	114, 189, 238, 264, 277
MboII	GAAGA	3 cut(s)	51, 206, 714
MflI	RGATCY	5 cut(s)	114, 189, 238, 264, 277
MluCI	AATT	2 cut(s)	621, 626
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	2 cut(s)	177, 239
Mph1103I	ATGCAT	1 cut(s)	578
MseI	TTAA	2 cut(s)	543, 624
MspI	CCGG	9 cut(s)	63, 69, 75, 120, 162, 195, 270, 472, 514
MspR9I	CCNGG	2 cut(s)	465, 473
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	4 cut(s)	23, 93, 304, 306
MwoI	GCNNNNNNNGC	2 cut(s)	29, 99
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	506
NdeII	GATC	5 cut(s)	114, 189, 238, 264, 277
NlaIII	CATG	3 cut(s)	149, 405, 510
NlaIV	GGNNCC	5 cut(s)	67, 73, 178, 470, 512
NmeAIII	GCCGAG	2 cut(s)	157, 232
NmuCI	GTSAC	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	578
PceI	AGGCCT	1 cut(s)	366
PfeI	GAWTC	7 cut(s)	83, 107, 158, 182, 233, 257, 547
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	2 cut(s)	176, 239
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	2 cut(s)	176, 239
PpuMI	RGGWCCY	1 cut(s)	136
PsiI	TTATAA	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	5 cut(s)	67, 73, 178, 470, 512
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PsuI	RGATCY	5 cut(s)	114, 189, 238, 264, 277
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	543, 624
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	5 cut(s)	114, 189, 238, 264, 277
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	177, 239
ScrFI	CCNGG	2 cut(s)	465, 473
SfoI	GGCGCC	1 cut(s)	178
SinI	GGWCC	1 cut(s)	136
SpeI	ACTAGT	1 cut(s)	580
Sse9I	AATT	2 cut(s)	621, 626
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	4 cut(s)	149, 302, 306, 334
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	296, 581
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	463, 471
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	2 cut(s)	226, 426
TaiI	ACGT	2 cut(s)	288, 319
TaqI	TCGA	3 cut(s)	243, 395, 437
TasI	AATT	2 cut(s)	621, 626
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	7 cut(s)	83, 107, 158, 182, 233, 257, 547
Tru1I	TTAA	2 cut(s)	543, 624
Tru9I	TTAA	2 cut(s)	543, 624
TscAI	CASTG	1 cut(s)	431
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	513
XspI	CTAG	2 cut(s)	296, 581
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.