Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011390.1

Orthogroup ID

OG0012679

Physical Location & Seq

Genomic Coordinates Reverse (-)

11318 .. 15165

Gene Structure 3848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011390.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgatcgagggtagaaaaggtctctcctttttcctttgtcctggtaataatggggtcaaacagtggtggagtcacaacagctcacactataacacagatttcttgtttctactagggcctctctcctcctccatcgaagactcccagagtcccaggccccagcctctcaacctcgcactcgtctctgctctccttcatcgaagactctcaagtctcaacctctcactcctccatcgaacactcccaacctcccaggccccagcctctcaacctcgtctcagcctcatcgaagaaccgagaccgaaacaacagctcaacctactcgatccaagtctcctccatcgaagactcgaagactcgaagactcgaaggctcctctactccatcgaagatcggaagctgtcgctcttcgctcactcctctctgccctcctcgaagattcgaaggctctcgatgggaaaactgggatttaaaagcggtaagaagaaagctcaagtacagaaaggaggagattctagtctagttgtttcttcaactggtacctctccctcaatccctgacagagctgaagaagatgtcacggatggaggagctccagcttcctcatctgacaaggttagtaacaatcctcgagctgatagaaaacgtagttgggtgtgggagcactttaaggaatataaggatgtaaaagtcactaaagtaaagggtcaagtagatattgtagaggaatttaggagggctaagtgtatatattgtcctaagggtcctctaggagactatgcttgtgatccctacaaaaatgggactcaagggatgattaggcacataaacaaatcatatcatgtaacctcagcctcttcaacctcttgtcctcctccaaaagctaagggaaagaatggtattggaactaatgatgaagttgttcaacttagtgaagatgactccgaggatgaaatggtgtctgatgattcagaaaacaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

327

Amino Acids

36.27

Weight (kDa)

9.23

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012679)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360411 RchiOBHm_Chr3g0479201 RchiOBHm_Chr5g0016291 RchiOBHm_Chr5g0071091
rosa_laevigata	RLG00000004355 RLG00000012312 RLG00000019508 RLG00000019971 RLG00000036427
rosa_multiflora	Rmu_sc0011390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009370 Rroxscaffold_2G00107450
rosa_rugosa	Rorug01G0201800
rosa_samantha	Rh1BG230500 Rh1CG077400 Rh2DG192900 Rh4BG427800 Rh7AG180300 Rh7CG180400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	210
Acc65I	GGTACC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	539
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	2 cut(s)	320, 782
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	2 cut(s)	498, 541
AgsI	TTSAA	3 cut(s)	534, 861, 926
AjnI	CCWGG	3 cut(s)	40, 152, 252
AjuI	GAANNNNNNNTTGG	2 cut(s)	634, 666
AluBI	AGCT	9 cut(s)	81, 313, 400, 491, 566, 593, 599, 635, 884
AluI	AGCT	9 cut(s)	81, 313, 400, 491, 566, 593, 599, 635, 884
Alw21I	GWGCWC	2 cut(s)	595, 666
Alw26I	GTCTC	7 cut(s)	26, 187, 218, 281, 292, 338, 768
AlwI	GGATC	2 cut(s)	320, 782
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	3 cut(s)	116, 155, 255
ApoI	RAATTY	1 cut(s)	728
Asp700I	GAANNNNTTC	1 cut(s)	921
Asp718I	GGTACC	1 cut(s)	539
AspS9I	GGNCC	4 cut(s)	116, 156, 256, 764
AsuII	TTCGAA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	764
AxyI	CCTNAGG	1 cut(s)	759
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	595
BbsI	GAAGAC	5 cut(s)	144, 208, 352, 360, 368
Bbv12I	GWGCWC	2 cut(s)	595, 666
BbvCI	CCTCAGC	1 cut(s)	850
BccI	CCATC	6 cut(s)	140, 240, 348, 392, 448, 578
BciT130I	CCWGG	3 cut(s)	42, 154, 254
BcoDI	GTCTC	7 cut(s)	26, 187, 218, 281, 292, 338, 768
BfaI	CTAG	4 cut(s)	113, 516, 521, 770
Bme1390I	CCNGG	3 cut(s)	42, 154, 254
Bme18I	GGWCC	1 cut(s)	764
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	4 cut(s)	116, 156, 256, 764
BmiI	GGNNCC	5 cut(s)	158, 258, 374, 541, 765
BmrFI	CCNGG	3 cut(s)	42, 154, 254
BmrI	ACTGGG	1 cut(s)	473
BmuI	ACTGGG	1 cut(s)	473
BpiI	GAAGAC	5 cut(s)	144, 208, 352, 360, 368
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	2 cut(s)	850, 885
Bpu14I	TTCGAA	1 cut(s)	442
BpuEI	CTTGAG	3 cut(s)	193, 477, 792
BsaI	GGTCTC	2 cut(s)	26, 292
BsaJI	CCNNGG	3 cut(s)	152, 252, 945
Bse1I	ACTGG	2 cut(s)	468, 541
Bse21I	CCTNAGG	1 cut(s)	759
BseBI	CCWGG	3 cut(s)	42, 154, 254
BseDI	CCNNGG	3 cut(s)	152, 252, 945
BseGI	GGATG	4 cut(s)	589, 688, 819, 955
BseMII	CTCAG	2 cut(s)	292, 864
BseNI	ACTGG	2 cut(s)	468, 541
BseYI	CCCAGC	2 cut(s)	159, 259
BshFI	GGCC	3 cut(s)	118, 157, 257
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	2 cut(s)	595, 666
BsiHKCI	CYCGRG	1 cut(s)	630
BslFI	GGGAC	2 cut(s)	135, 817
BsmAI	GTCTC	7 cut(s)	26, 187, 218, 281, 292, 338, 768
BsmBI	CGTCTC	2 cut(s)	187, 281
BsmFI	GGGAC	2 cut(s)	135, 817
BsnI	GGCC	3 cut(s)	118, 157, 257
Bso31I	GGTCTC	2 cut(s)	26, 292
BsoBI	CYCGRG	1 cut(s)	630
Bsp119I	TTCGAA	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	595, 666
Bsp143I	GATC	4 cut(s)	3, 325, 391, 787
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	3 cut(s)	118, 157, 257
BspCNI	CTCAG	2 cut(s)	291, 863
BspLI	GGNNCC	5 cut(s)	158, 258, 374, 541, 765
BspPI	GGATC	2 cut(s)	320, 782
BspQI	GCTCTTC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	539
BspTNI	GGTCTC	2 cut(s)	26, 292
BsrI	ACTGG	2 cut(s)	468, 541
BssECI	CCNNGG	3 cut(s)	152, 252, 945
BssMI	GATC	4 cut(s)	3, 325, 391, 787
Bst2UI	CCWGG	3 cut(s)	42, 154, 254
Bst4CI	ACNGT	1 cut(s)	63
Bst6I	CTCTTC	2 cut(s)	413, 862
BstBI	TTCGAA	1 cut(s)	442
BstDEI	CTNAG	6 cut(s)	278, 741, 759, 850, 885, 929
BstF5I	GGATG	4 cut(s)	589, 688, 819, 955
BstKTI	GATC	4 cut(s)	6, 328, 394, 790
BstMAI	GTCTC	7 cut(s)	26, 187, 218, 281, 292, 338, 768
BstMBI	GATC	4 cut(s)	3, 325, 391, 787
BstNI	CCWGG	3 cut(s)	42, 154, 254
BstSCI	CCNGG	3 cut(s)	40, 152, 252
BstV2I	GAAGAC	5 cut(s)	144, 208, 352, 360, 368
Bsu36I	CCTNAGG	1 cut(s)	759
BsuRI	GGCC	3 cut(s)	118, 157, 257
BtsCI	GGATG	4 cut(s)	589, 688, 819, 955
BtsIMutI	CAGTG	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	116, 156, 256, 764
Csp6I	GTAC	2 cut(s)	497, 540
CviAII	CATG	1 cut(s)	842
CviQI	GTAC	2 cut(s)	497, 540
DdeI	CTNAG	6 cut(s)	278, 741, 759, 850, 885, 929
DpnI	GATC	4 cut(s)	5, 327, 393, 789
DpnII	GATC	4 cut(s)	3, 325, 391, 787
DraI	TTTAAA	1 cut(s)	472
DrdI	GACNNNNNNGTC	1 cut(s)	210
DseDI	GACNNNNNNGTC	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	413, 862
EarI	CTCTTC	2 cut(s)	413, 862
Ecl136II	GAGCTC	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	595
Eco31I	GGTCTC	2 cut(s)	26, 292
Eco47I	GGWCC	1 cut(s)	764
Eco53kI	GAGCTC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	588
Eco81I	CCTNAGG	1 cut(s)	759
Eco88I	CYCGRG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	593
EcoO109I	RGGNCCY	4 cut(s)	116, 156, 256, 764
EcoRII	CCWGG	3 cut(s)	40, 152, 252
EcoT38I	GRGCYC	1 cut(s)	595
Esp3I	CGTCTC	2 cut(s)	187, 281
FaeI	CATG	1 cut(s)	845
FaiI	YATR	8 cut(s)	90, 678, 749, 751, 780, 827, 838, 843
FaqI	GGGAC	2 cut(s)	135, 817
FatI	CATG	1 cut(s)	841
FokI	GGATG	4 cut(s)	596, 695, 826, 962
FriOI	GRGCYC	1 cut(s)	595
FspBI	CTAG	4 cut(s)	113, 516, 521, 770
GsaI	CCCAGC	2 cut(s)	163, 263
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	3 cut(s)	118, 157, 257
Hin1II	CATG	1 cut(s)	845
Hpy188I	TCNGA	5 cut(s)	396, 610, 946, 964, 973
Hpy188III	TCNNGA	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	203, 363, 438
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	646
HpyF3I	CTNAG	6 cut(s)	278, 741, 759, 850, 885, 929
HpySE526I	ACGT	1 cut(s)	646
Hsp92II	CATG	1 cut(s)	845
KpnI	GGTACC	1 cut(s)	543
Kzo9I	GATC	4 cut(s)	3, 325, 391, 787
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	4 cut(s)	378, 590, 598, 661
MaeI	CTAG	4 cut(s)	113, 516, 521, 770
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	5 cut(s)	71, 577, 620, 691, 844
MalI	GATC	4 cut(s)	5, 327, 393, 789
MboI	GATC	4 cut(s)	3, 325, 391, 787
MfeI	CAATTG	1 cut(s)	979
MhlI	GDGCHC	2 cut(s)	595, 666
MluCI	AATT	2 cut(s)	728, 979
MlyI	GAGTC	9 cut(s)	79, 134, 157, 198, 342, 350, 358, 799, 935
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	2 cut(s)	471, 669
MspR9I	CCNGG	3 cut(s)	42, 154, 254
MunI	CAATTG	1 cut(s)	979
MvaI	CCWGG	3 cut(s)	42, 154, 254
NdeII	GATC	4 cut(s)	3, 325, 391, 787
NlaIII	CATG	1 cut(s)	845
NlaIV	GGNNCC	5 cut(s)	158, 258, 374, 541, 765
NmuCI	GTSAC	3 cut(s)	71, 577, 691
NspV	TTCGAA	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	3 cut(s)	439, 512, 968
PleI	GAGTC	9 cut(s)	78, 134, 156, 198, 342, 350, 358, 799, 935
PpsI	GAGTC	9 cut(s)	78, 134, 156, 198, 342, 350, 358, 799, 935
PpuMI	RGGWCCY	1 cut(s)	764
Psp124BI	GAGCTC	1 cut(s)	595
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	3 cut(s)	40, 152, 252
PspFI	CCCAGC	2 cut(s)	159, 259
PspGI	CCWGG	3 cut(s)	40, 152, 252
PspN4I	GGNNCC	5 cut(s)	158, 258, 374, 541, 765
PspPI	GGNCC	4 cut(s)	116, 156, 256, 764
PspPPI	RGGWCCY	1 cut(s)	764
PspXI	VCTCGAGB	1 cut(s)	630
RsaI	GTAC	2 cut(s)	498, 541
RsaNI	GTAC	2 cut(s)	497, 540
SacI	GAGCTC	1 cut(s)	595
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	471, 669
Sau3AI	GATC	4 cut(s)	3, 325, 391, 787
Sau96I	GGNCC	4 cut(s)	116, 156, 256, 764
SchI	GAGTC	9 cut(s)	79, 134, 157, 198, 342, 350, 358, 799, 935
ScrFI	CCNGG	3 cut(s)	42, 154, 254
SduI	GDGCHC	2 cut(s)	595, 666
Sfr274I	CTCGAG	1 cut(s)	630
SfuI	TTCGAA	1 cut(s)	442
SinI	GGWCC	1 cut(s)	764
SlaI	CTCGAG	1 cut(s)	630
SmlI	CTYRAG	4 cut(s)	208, 492, 630, 807
SmoI	CTYRAG	4 cut(s)	208, 492, 630, 807
Sse9I	AATT	2 cut(s)	728, 979
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	4 cut(s)	113, 516, 521, 770
SstI	GAGCTC	1 cut(s)	595
StyD4I	CCNGG	3 cut(s)	40, 152, 252
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	649
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	2 cut(s)	728, 979
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	3 cut(s)	439, 512, 968
Tru1I	TTAA	2 cut(s)	471, 669
Tru9I	TTAA	2 cut(s)	471, 669
TscAI	CASTG	1 cut(s)	68
TseFI	GTSAC	3 cut(s)	71, 577, 691
Tsp45I	GTSAC	3 cut(s)	71, 577, 691
TspDTI	ATGAA	3 cut(s)	185, 930, 966
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	764
XapI	RAATTY	1 cut(s)	728
XhoI	CTCGAG	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	4 cut(s)	113, 516, 521, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.