RLG00000036427

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012679
Physical Location & Seq
Reverse (-)
80483335 .. 80486815
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036427

Sequence Viewer

Length: 684 bp
ATGGGTCGAATACATACCGTTTTAACCGACCCGACCCGAAGCTCTAATATTGCGTACGACGTGTCGTTGATATCAGCTCTAAACAGCCCTAAACATCGCGTTCTGCCGTTCCAGCACTCCACTCCCAATTTCGAAACCCTAATCGAGCCTCTCTCCTCCTCCATCGAACACTCCCAGGCCCCAGCCTCTCAACCTCGCACTCCTCTCTGCTCTCCTCCATCAAAGACTCTCAGCCTCTCACTCTCACAGTCTCACCCTAATCGAGCCTCTCTCCTCCTCCATCGAAGACTCCCAGGCCCCAGCCTCTCAACCTCGCACTCCTCTCTGCTCTCCTCCATCGAAGACTCTCAACCTCGCACTCCTCTCTGCTCTCCTCCATCGAAGACTCTCAGCCTCTCGAAGAACCGAGACCGAAACAACAGCTCAACCTACTCGGCTCTCACCCCTCTCTGCCCTCCATCGAGGAATCGATTCTTCTACTCGTTTCTTCAACTCGATTCTTCAAGCCTCTCACTCCGAATCGATGGGAAAACTGGGAATCATGTAACCTCAGCCTCTTCAACCTCTTGTCCTCCTCCAAAAGCTAAGGGAAAGAATGGTATTGGAACTAATGATGAAGTTGTTCAACTCAGTGAAGATGACTCCGAGGATGAAATGGTGTCTGATGATTCAGAAAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.53

Weight (kDa)

7.09

Isoelectric Point (pI)

67.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AfaI GTAC 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 4 cut(s) 491, 504, 561, 626
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 2 cut(s) 174, 292
AluBI AGCT 4 cut(s) 42, 77, 423, 584
AluI AGCT 4 cut(s) 42, 77, 423, 584
Alw26I GTCTC 2 cut(s) 255, 402
AoxI GGCC 2 cut(s) 177, 295
Asp700I GAANNNNTTC 2 cut(s) 470, 621
AspS9I GGNCC 2 cut(s) 178, 296
AsuHPI GGTGA 2 cut(s) 245, 433
AsuII TTCGAA 1 cut(s) 132
BbsI GAAGAC 3 cut(s) 292, 348, 389
BbvCI CCTCAGC 1 cut(s) 550
BccI CCATC 7 cut(s) 170, 226, 288, 344, 385, 466, 518
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 2 cut(s) 176, 294
BcoDI GTCTC 2 cut(s) 255, 402
Bme1390I CCNGG 2 cut(s) 176, 294
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 178, 296
BmiI GGNNCC 2 cut(s) 180, 298
BmrFI CCNGG 2 cut(s) 176, 294
BmrI ACTGGG 1 cut(s) 543
BmuI ACTGGG 1 cut(s) 543
BpiI GAAGAC 3 cut(s) 292, 348, 389
BplI GAGNNNNNCTC 4 cut(s) 137, 169, 255, 287
Bpu10I CCTNAGC 2 cut(s) 550, 585
Bpu14I TTCGAA 1 cut(s) 132
Bsa29I ATCGAT 2 cut(s) 469, 522
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 174, 292, 645
Bse1I ACTGG 1 cut(s) 538
BseBI CCWGG 2 cut(s) 176, 294
BseCI ATCGAT 2 cut(s) 469, 522
BseDI CCNNGG 3 cut(s) 174, 292, 645
BseGI GGATG 1 cut(s) 655
BseMII CTCAG 4 cut(s) 244, 403, 564, 643
BseNI ACTGG 1 cut(s) 538
BseYI CCCAGC 2 cut(s) 181, 299
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 179, 297
BshVI ATCGAT 2 cut(s) 469, 522
BsiWI CGTACG 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 255, 402
BsnI GGCC 2 cut(s) 179, 297
Bso31I GGTCTC 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 132
BspANI GGCC 2 cut(s) 179, 297
BspCNI CTCAG 4 cut(s) 243, 402, 563, 642
BspDI ATCGAT 2 cut(s) 469, 522
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 180, 298
BspT104I TTCGAA 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 402
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 3 cut(s) 174, 292, 645
Bst2UI CCWGG 2 cut(s) 176, 294
Bst4CI ACNGT 3 cut(s) 19, 249, 680
Bst6I CTCTTC 1 cut(s) 562
BstBI TTCGAA 1 cut(s) 132
BstDEI CTNAG 5 cut(s) 230, 389, 550, 585, 629
BstF5I GGATG 1 cut(s) 655
BstFNI CGCG 1 cut(s) 99
BstMAI GTCTC 2 cut(s) 255, 402
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 2 cut(s) 176, 294
BstSCI CCNGG 2 cut(s) 174, 292
BstUI CGCG 1 cut(s) 99
BstV2I GAAGAC 3 cut(s) 292, 348, 389
Bsu15I ATCGAT 2 cut(s) 469, 522
BsuRI GGCC 2 cut(s) 179, 297
BsuTUI ATCGAT 2 cut(s) 469, 522
BtgZI GCGATG 1 cut(s) 80
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 655
BtsIMutI CAGTG 1 cut(s) 637
Cfr13I GGNCC 2 cut(s) 178, 296
ClaI ATCGAT 2 cut(s) 469, 522
Csp6I GTAC 1 cut(s) 55
CviAII CATG 1 cut(s) 542
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 5 cut(s) 230, 389, 550, 585, 629
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
Eco31I GGTCTC 1 cut(s) 402
Eco32I GATATC 1 cut(s) 72
EcoO109I RGGNCCY 2 cut(s) 178, 296
EcoRII CCWGG 2 cut(s) 174, 292
EcoRV GATATC 1 cut(s) 72
FaeI CATG 1 cut(s) 545
FaiI YATR 2 cut(s) 15, 543
FatI CATG 1 cut(s) 541
FokI GGATG 1 cut(s) 662
GsaI CCCAGC 2 cut(s) 185, 303
HaeIII GGCC 2 cut(s) 179, 297
Hin1II CATG 1 cut(s) 545
HphI GGTGA 2 cut(s) 245, 433
Hpy188I TCNGA 4 cut(s) 518, 646, 664, 673
Hpy188III TCNNGA 1 cut(s) 397
Hpy99I CGWCG 1 cut(s) 62
HpyCH4III ACNGT 3 cut(s) 19, 249, 680
HpyCH4IV ACGT 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 5 cut(s) 230, 389, 550, 585, 629
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 1 cut(s) 545
LpnPI CCDG 8 cut(s) 125, 161, 188, 195, 279, 306, 313, 519
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 544
MboII GAAGA 9 cut(s) 297, 353, 394, 412, 466, 479, 492, 549, 647
MluCI AATT 1 cut(s) 127
MlyI GAGTC 5 cut(s) 220, 282, 338, 379, 635
MroXI GAANNNNTTC 2 cut(s) 470, 621
MseI TTAA 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 176, 294
MvaI CCWGG 2 cut(s) 176, 294
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 112
NlaIII CATG 1 cut(s) 545
NlaIV GGNNCC 2 cut(s) 180, 298
NmeAIII GCCGAG 1 cut(s) 413
NspV TTCGAA 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 470, 621
PfeI GAWTC 6 cut(s) 466, 471, 497, 519, 538, 668
Pfl23II CGTACG 1 cut(s) 54
PleI GAGTC 5 cut(s) 220, 282, 338, 379, 635
PpsI GAGTC 5 cut(s) 220, 282, 338, 379, 635
Psp6I CCWGG 2 cut(s) 174, 292
PspFI CCCAGC 2 cut(s) 181, 299
PspGI CCWGG 2 cut(s) 174, 292
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 180, 298
PspPI GGNCC 2 cut(s) 178, 296
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 23
Sau96I GGNCC 2 cut(s) 178, 296
SchI GAGTC 5 cut(s) 220, 282, 338, 379, 635
ScrFI CCNGG 2 cut(s) 176, 294
SfuI TTCGAA 1 cut(s) 132
Sse9I AATT 1 cut(s) 127
SspI AATATT 1 cut(s) 49
StyD4I CCNGG 2 cut(s) 174, 292
TaaI ACNGT 3 cut(s) 19, 249, 680
TaiI ACGT 1 cut(s) 63
TaqII GACCGA 1 cut(s) 426
TasI AATT 1 cut(s) 127
TfiI GAWTC 6 cut(s) 466, 471, 497, 519, 538, 668
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 637
TspDTI ATGAA 2 cut(s) 630, 666
TspRI CASTG 1 cut(s) 637
XmnI GAANNNNTTC 2 cut(s) 470, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.